Wall clock time and date at job start Sat Apr 11 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 117.00079 * 2 1 4 4 O 1.20823 * 119.99841 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99984 * 179.97438 * 3 2 1 6 6 H 1.08996 * 110.77871 * 57.98297 * 5 3 2 7 7 C 1.55157 * 110.71963 * 181.21401 * 5 3 2 8 8 C 1.54907 * 101.58084 * 153.86706 * 7 5 3 9 9 N 1.47426 * 104.83569 * 322.99160 * 8 7 5 10 10 C 1.34772 * 125.65293 * 204.15040 * 9 8 7 11 11 O 1.21590 * 119.99931 * 178.27799 * 10 9 8 12 12 N 1.34772 * 119.99833 * 358.27236 * 10 9 8 13 13 C 1.46505 * 120.00060 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47267 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47151 * 300.00374 * 14 13 12 16 16 C 1.53001 * 109.46657 * 60.00340 * 14 13 12 17 17 C 1.50693 * 109.46968 * 180.02562 * 14 13 12 18 18 H 1.08001 * 120.00424 * 0.02562 * 17 14 13 19 19 C 1.37880 * 119.99735 * 180.02562 * 17 14 13 20 20 N 1.31509 * 120.00181 * 359.97438 * 19 17 14 21 21 Si 1.86809 * 119.99777 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47264 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47050 * 119.99996 * 21 19 17 24 24 H 1.48507 * 109.46823 * 239.99785 * 21 19 17 25 25 C 1.47022 * 108.69877 * 24.12890 * 9 8 7 26 26 H 1.08998 * 109.88319 * 118.35696 * 25 9 8 27 27 C 1.52999 * 109.88417 * 239.37051 * 25 9 8 28 28 C 1.53006 * 109.46715 * 291.23372 * 27 25 9 29 29 C 1.52997 * 109.47107 * 51.23210 * 27 25 9 30 30 H 1.09001 * 109.46780 * 299.99858 * 1 2 3 31 31 H 1.09000 * 109.47264 * 59.99671 * 1 2 3 32 32 H 1.08991 * 109.47216 * 179.97438 * 1 2 3 33 33 H 1.09005 * 111.00181 * 35.79572 * 7 5 3 34 34 H 1.08997 * 111.00704 * 271.94186 * 7 5 3 35 35 H 1.09004 * 110.36914 * 204.15146 * 8 7 5 36 36 H 1.09003 * 110.36643 * 81.83324 * 8 7 5 37 37 H 0.96999 * 120.00444 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47038 * 300.00410 * 13 12 10 39 39 H 1.09000 * 109.46935 * 60.00275 * 13 12 10 40 40 H 1.08999 * 109.47039 * 60.00177 * 15 14 13 41 41 H 1.09001 * 109.46604 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.46979 * 299.99854 * 15 14 13 43 43 H 1.08997 * 109.47367 * 60.00410 * 16 14 13 44 44 H 1.09005 * 109.46810 * 180.02562 * 16 14 13 45 45 H 1.09003 * 109.47329 * 299.99390 * 16 14 13 46 46 H 0.97003 * 120.00128 * 179.97438 * 20 19 17 47 47 H 1.08996 * 109.47525 * 171.23652 * 27 25 9 48 48 H 1.09005 * 109.46959 * 84.88071 * 28 27 25 49 49 H 1.08996 * 109.47296 * 204.87627 * 28 27 25 50 50 H 1.08994 * 109.47480 * 324.88112 * 28 27 25 51 51 H 1.09000 * 109.47006 * 60.00648 * 29 27 25 52 52 H 1.09001 * 109.46847 * 180.02562 * 29 27 25 53 53 H 1.09004 * 109.47403 * 299.99940 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9811 0.7554 -0.8632 7 6 4.0386 2.7525 0.0312 8 6 5.4315 2.6201 0.6960 9 7 5.2677 1.5604 1.7078 10 6 6.0235 1.4058 2.8128 11 8 5.7772 0.5101 3.5974 12 7 7.0524 2.2438 3.0482 13 6 7.8737 2.0761 4.2497 14 6 8.9640 3.1492 4.2761 15 6 9.8450 3.0119 3.0328 16 6 8.3153 4.5349 4.2911 17 6 9.8091 2.9763 5.5117 18 1 9.5908 2.1803 6.2083 19 6 10.8612 3.8342 5.7530 20 7 11.1273 4.8032 4.9045 21 14 11.9093 3.6194 7.2843 22 1 11.4067 2.4639 8.0701 23 1 13.3193 3.3737 6.8886 24 1 11.8347 4.8503 8.1118 25 6 4.1428 0.7005 1.3118 26 1 4.4947 -0.3179 1.1473 27 6 3.0708 0.7104 2.4035 28 6 3.6005 -0.0105 3.6448 29 6 2.7225 2.1562 2.7631 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.3717 3.3633 0.6398 34 1 4.1240 3.1564 -0.9775 35 1 5.7154 3.5586 1.1722 36 1 6.1780 2.3274 -0.0424 37 1 7.2487 2.9585 2.4224 38 1 7.2461 2.1744 5.1354 39 1 8.3354 1.0888 4.2393 40 1 9.2339 3.1368 2.1389 41 1 10.6214 3.7767 3.0515 42 1 10.3070 2.0247 3.0222 43 1 7.6877 4.6327 5.1769 44 1 9.0921 5.2994 4.3095 45 1 7.7043 4.6597 3.3971 46 1 11.8673 5.4070 5.0745 47 1 2.1781 0.2011 2.0407 48 1 4.1763 0.6877 4.2524 49 1 2.7628 -0.3939 4.2274 50 1 4.2396 -0.8387 3.3390 51 1 2.3452 2.6697 1.8788 52 1 1.9591 2.1632 3.5411 53 1 3.6153 2.6656 3.1259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459238317.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:10 Heat of formation + Delta-G solvation = -110.109576 kcal Electronic energy + Delta-G solvation = -32430.527307 eV Core-core repulsion = 28302.790339 eV Total energy + Delta-G solvation = -4127.736968 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.47899 -41.09744 -39.19155 -37.94271 -37.41558 -35.79852 -34.53862 -33.14017 -32.18771 -30.10217 -28.44066 -28.04507 -27.54163 -27.43440 -26.75776 -24.91907 -23.61975 -22.48110 -21.24847 -20.54208 -20.11097 -19.08525 -18.45052 -18.01568 -17.80250 -17.59661 -17.10732 -16.85290 -16.61440 -15.86956 -15.52330 -15.35379 -14.86498 -14.79120 -14.62005 -14.33345 -14.18242 -13.96214 -13.92157 -13.78854 -13.56760 -13.28634 -13.20282 -13.08142 -12.99844 -12.78704 -12.72927 -12.63883 -12.55091 -12.24643 -12.13655 -12.09459 -11.96057 -11.76522 -11.54780 -11.53308 -11.41831 -11.26255 -11.15852 -10.70701 -10.63906 -10.37654 -9.73292 -9.37507 -8.00933 -6.16018 1.08003 1.41812 1.46017 1.53499 1.56733 1.88296 2.28619 2.46943 3.12476 3.22830 3.28860 3.43353 3.68644 3.87487 4.02921 4.10008 4.16870 4.29776 4.33666 4.36971 4.45366 4.46147 4.57508 4.63559 4.69564 4.72013 4.74241 4.75166 4.85132 4.89933 5.01728 5.02776 5.06399 5.08169 5.10178 5.15409 5.21025 5.23143 5.34386 5.37506 5.41000 5.46867 5.61977 5.69282 5.69737 5.83753 6.14513 6.17512 6.24789 6.46075 6.68577 6.88660 7.13212 7.51659 7.74267 8.98178 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026753 B = 0.002600 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.340919 B =10767.291580 C =11231.494989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.483 3.517 4 O -0.522 6.522 5 C -0.089 4.089 6 H 0.155 0.845 7 C -0.111 4.111 8 C 0.093 3.907 9 N -0.628 5.628 10 C 0.706 3.294 11 O -0.606 6.606 12 N -0.727 5.727 13 C 0.172 3.828 14 C 0.053 3.947 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.525 4.525 18 H 0.043 0.957 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 0.944 3.056 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.174 3.826 26 H 0.085 0.915 27 C -0.111 4.111 28 C -0.121 4.121 29 C -0.147 4.147 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.401 0.599 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.061 0.939 42 H 0.018 0.982 43 H 0.015 0.985 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.260 0.740 47 H 0.086 0.914 48 H 0.059 0.941 49 H 0.029 0.971 50 H 0.048 0.952 51 H 0.073 0.927 52 H 0.046 0.954 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.626 -5.965 -15.896 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.327 3.673 4 O -0.411 6.411 5 C -0.109 4.109 6 H 0.172 0.828 7 C -0.148 4.148 8 C -0.029 4.029 9 N -0.366 5.366 10 C 0.408 3.592 11 O -0.487 6.487 12 N -0.383 5.383 13 C 0.048 3.952 14 C 0.052 3.948 15 C -0.176 4.176 16 C -0.176 4.176 17 C -0.564 4.564 18 H 0.062 0.938 19 C -0.171 4.171 20 N -0.538 5.538 21 Si 0.771 3.229 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.208 1.208 25 C 0.070 3.930 26 H 0.103 0.897 27 C -0.130 4.130 28 C -0.178 4.178 29 C -0.204 4.204 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.146 0.854 33 H 0.099 0.901 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.237 0.763 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.034 0.966 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.077 0.923 49 H 0.048 0.952 50 H 0.067 0.933 51 H 0.091 0.909 52 H 0.065 0.935 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -18.828 -6.186 -15.259 25.012 hybrid contribution 0.646 0.334 1.094 1.314 sum -18.183 -5.851 -14.165 23.780 Atomic orbital electron populations 1.23539 0.74886 1.05613 1.02574 1.86545 1.24869 1.32771 1.83553 1.23313 0.91682 0.81398 0.70907 1.90662 1.67386 1.36947 1.46093 1.22266 0.87336 1.00778 1.00499 0.82758 1.22907 0.94929 0.93077 1.03930 1.22578 0.98517 0.90997 0.90825 1.47409 1.33352 1.32642 1.23238 1.15629 0.79935 0.82742 0.80865 1.90973 1.71821 1.36971 1.48930 1.45261 1.31574 1.34357 1.27087 1.21055 0.91037 0.98553 0.84583 1.18341 0.90875 0.91071 0.94494 1.21640 1.00310 0.99834 0.95780 1.21648 0.98737 1.00085 0.97129 1.21293 1.13816 1.14100 1.07197 0.93821 1.25434 0.98037 0.94984 0.98683 1.69910 1.29865 1.17584 1.36434 0.85731 0.78878 0.77745 0.80586 1.20072 1.20693 1.20823 1.21364 0.85669 0.94390 0.91615 0.89679 1.21683 0.97933 0.96931 0.96487 1.22089 0.97827 1.00806 0.97094 1.22014 1.00524 0.96025 1.01870 0.92343 0.91400 0.85404 0.90085 0.86131 0.90213 0.88696 0.76276 0.94998 0.94627 0.94561 0.91980 0.96321 0.96561 0.91917 0.94705 0.93068 0.89637 0.92272 0.95200 0.93288 0.90877 0.93508 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.79 9.25 -51.46 -0.48 -6.26 16 3 C 0.48 8.57 4.85 71.24 0.35 8.92 16 4 O -0.52 -11.52 14.04 21.97 0.31 -11.21 16 5 C -0.09 -1.32 3.27 -10.35 -0.03 -1.35 16 6 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 7 C -0.11 -1.55 5.63 31.99 0.18 -1.37 16 8 C 0.09 1.57 6.54 86.85 0.57 2.14 16 9 N -0.63 -15.43 2.12 -805.89 -1.71 -17.13 16 10 C 0.71 23.80 7.64 179.06 1.37 25.17 16 11 O -0.61 -24.33 10.88 -4.00 -0.04 -24.38 16 12 N -0.73 -25.18 4.92 -478.53 -2.35 -27.53 16 13 C 0.17 7.35 4.50 86.38 0.39 7.74 16 14 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 15 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 16 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 17 C -0.53 -27.81 8.01 25.60 0.21 -27.61 16 18 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 19 C 0.03 1.49 5.15 84.66 0.44 1.92 16 20 N -0.90 -47.79 9.35 21.45 0.20 -47.59 16 21 Si 0.94 42.73 29.54 68.60 2.03 44.76 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 C 0.17 3.71 2.84 45.34 0.13 3.84 16 26 H 0.09 1.85 7.96 -2.39 -0.02 1.84 16 27 C -0.11 -2.70 2.22 -10.79 -0.02 -2.72 16 28 C -0.12 -3.68 7.49 71.98 0.54 -3.14 16 29 C -0.15 -3.73 7.85 71.98 0.57 -3.16 16 30 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 31 H 0.07 0.70 8.13 -2.39 -0.02 0.68 16 32 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 1.46 5.41 -2.38 -0.01 1.44 16 34 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.39 7.36 -2.38 -0.02 1.37 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.40 12.23 4.68 -92.71 -0.43 11.80 16 38 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 41 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 43 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 3.10 6.07 -2.38 -0.01 3.08 16 45 H 0.03 1.29 6.86 -2.39 -0.02 1.28 16 46 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 47 H 0.09 1.89 5.68 -2.39 -0.01 1.87 16 48 H 0.06 2.20 5.37 -18.80 -0.10 2.10 16 49 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.05 1.60 6.78 -2.39 -0.02 1.58 16 51 H 0.07 1.73 3.44 -2.39 -0.01 1.72 16 52 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 53 H 0.04 1.17 7.00 -2.38 -0.02 1.15 16 Total: -1.00 -64.63 387.93 5.35 -59.28 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.39 Total: 25.07 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 7.00 Total: 5.01 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -3.86 Total: -92.26 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.21 Total: -41.85 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -64.63 5.35 -59.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459238317.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.833 kcal (2) G-P(sol) polarization free energy of solvation -64.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds