Wall clock time and date at job start Sat Apr 11 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47110 * 2 1 4 4 C 1.50703 * 109.47221 * 239.99841 * 2 1 3 5 5 H 1.07995 * 120.00498 * 240.00441 * 4 2 1 6 6 C 1.37877 * 119.99548 * 59.99620 * 4 2 1 7 7 N 1.31516 * 120.00459 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99809 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47366 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.47039 * 120.00543 * 8 6 4 11 11 H 1.48494 * 109.47528 * 240.00375 * 8 6 4 12 12 C 1.53002 * 109.47208 * 120.00138 * 2 1 3 13 13 N 1.46501 * 109.47018 * 299.99760 * 12 2 1 14 14 C 1.34779 * 120.00121 * 179.97438 * 13 12 2 15 15 O 1.21587 * 119.99667 * 5.08442 * 14 13 12 16 16 N 1.34770 * 120.00272 * 185.08432 * 14 13 12 17 17 C 1.47152 * 120.98104 * 354.98490 * 16 14 13 18 18 C 1.53297 * 108.38702 * 129.48971 * 17 16 14 19 19 O 1.42965 * 109.21972 * 52.29923 * 18 17 16 20 20 C 1.42958 * 114.17078 * 297.42522 * 19 18 17 21 21 H 1.09001 * 109.55003 * 302.62857 * 20 19 18 22 22 C 1.52995 * 109.51214 * 182.50552 * 20 19 18 23 23 O 1.42899 * 109.47368 * 65.25374 * 22 20 19 24 24 C 1.42895 * 114.00047 * 179.97438 * 23 22 20 25 25 C 1.52999 * 109.47124 * 179.97438 * 24 23 22 26 26 C 1.53006 * 117.50140 * 243.62134 * 25 24 23 27 27 C 1.52997 * 60.00086 * 252.51001 * 26 25 24 28 28 C 1.47150 * 120.98612 * 175.01290 * 16 14 13 29 29 H 1.09001 * 109.47088 * 299.99889 * 1 2 3 30 30 H 1.08999 * 109.47127 * 59.99951 * 1 2 3 31 31 H 1.08996 * 109.47192 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47207 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47165 * 300.00025 * 3 2 1 34 34 H 1.09002 * 109.47491 * 60.00401 * 3 2 1 35 35 H 0.96997 * 120.00422 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47225 * 179.97438 * 12 2 1 37 37 H 1.09004 * 109.46892 * 59.99617 * 12 2 1 38 38 H 0.97000 * 119.99983 * 0.02562 * 13 12 2 39 39 H 1.09001 * 109.68795 * 249.21568 * 17 16 14 40 40 H 1.09005 * 109.68279 * 9.73141 * 17 16 14 41 41 H 1.09000 * 109.51950 * 172.22871 * 18 17 16 42 42 H 1.09006 * 109.50867 * 292.38429 * 18 17 16 43 43 H 1.09000 * 109.46996 * 305.24873 * 22 20 19 44 44 H 1.09004 * 109.47034 * 185.25295 * 22 20 19 45 45 H 1.08999 * 109.47334 * 300.00111 * 24 23 22 46 46 H 1.09001 * 109.47604 * 60.00056 * 24 23 22 47 47 H 1.08994 * 115.55387 * 29.33011 * 25 24 23 48 48 H 1.09000 * 117.49891 * 0.02562 * 26 25 24 49 49 H 1.08999 * 117.50018 * 145.02101 * 26 25 24 50 50 H 1.08997 * 117.50240 * 252.50775 * 27 26 25 51 51 H 1.09005 * 117.51718 * 107.48250 * 27 26 25 52 52 H 1.08999 * 109.68313 * 110.78260 * 28 16 14 53 53 H 1.08998 * 109.70617 * 350.24975 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 3.1474 -2.2863 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6696 15 8 2.6496 -1.4233 3.7828 16 7 1.3457 0.0808 4.7680 17 6 0.4955 1.2773 4.6629 18 6 -0.7958 1.0235 5.4491 19 8 -0.4648 0.5940 6.7719 20 6 0.2541 -0.6406 6.8238 21 1 -0.3254 -1.4211 6.3307 22 6 0.4971 -1.0295 8.2834 23 8 -0.7539 -1.2999 8.9190 24 6 -0.6386 -1.6751 10.2930 25 6 -2.0316 -1.9386 10.8683 26 6 -2.5154 -1.0233 11.9949 27 6 -2.1156 -2.4680 12.3013 28 6 1.5991 -0.4720 6.1080 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.7087 1.1613 -3.4844 36 1 3.1300 -0.7217 1.2490 37 1 1.6766 -1.7490 1.2492 38 1 0.9938 0.7578 2.3564 39 1 1.0178 2.1370 5.0827 40 1 0.2573 1.4677 3.6164 41 1 -1.3780 1.9436 5.5000 42 1 -1.3795 0.2495 4.9504 43 1 0.9972 -0.2099 8.7993 44 1 1.1245 -1.9200 8.3225 45 1 -0.0349 -2.5791 10.3734 46 1 -0.1620 -0.8691 10.8510 47 1 -2.7748 -2.2958 10.1555 48 1 -1.8415 -0.2332 12.3260 49 1 -3.5771 -0.7781 12.0233 50 1 -2.9142 -3.1733 12.5313 51 1 -1.1784 -2.6290 12.8342 52 1 2.2326 0.2115 6.6733 53 1 2.0915 -1.4403 6.0190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459243154.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:13 Heat of formation + Delta-G solvation = -105.908027 kcal Electronic energy + Delta-G solvation = -30294.775173 eV Core-core repulsion = 26167.220398 eV Total energy + Delta-G solvation = -4127.554775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66158 -40.00809 -39.13534 -38.16538 -37.40150 -35.82089 -35.03652 -33.42043 -32.51179 -29.65960 -28.44366 -27.57143 -27.45986 -26.93624 -25.66565 -24.37833 -23.24410 -22.63869 -21.52781 -20.95997 -20.66879 -19.42971 -18.09975 -17.83958 -17.75238 -17.24735 -16.85838 -16.72217 -16.70299 -16.26257 -15.92166 -15.76091 -15.37496 -15.25321 -15.05362 -15.00529 -14.70591 -14.20657 -14.06991 -13.84525 -13.56392 -13.24340 -13.20188 -13.09628 -12.73623 -12.69698 -12.56501 -12.38839 -12.27744 -12.26063 -12.13883 -11.98395 -11.83318 -11.49653 -11.39898 -11.32994 -11.28289 -11.13306 -11.06201 -10.70683 -10.44801 -10.40376 -10.11809 -9.47578 -8.02328 -6.17573 1.41595 1.44990 1.48732 1.56078 2.06315 2.44650 2.47369 2.66592 2.92564 2.95529 3.21486 3.68016 3.80210 3.86965 3.96141 3.97280 4.00581 4.13369 4.18957 4.28888 4.34559 4.37695 4.41857 4.45617 4.51865 4.55359 4.58619 4.68997 4.70024 4.74471 4.77853 4.78579 4.90759 4.97825 5.02172 5.04226 5.08658 5.18938 5.23829 5.25074 5.33665 5.36136 5.58353 5.66719 5.67873 5.83310 6.06728 6.14620 6.21061 6.25053 6.43550 6.86308 6.92336 7.49633 7.50299 8.96927 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027623 B = 0.001834 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.415147 B =15267.552017 C =15404.657887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.050 3.950 3 C -0.118 4.118 4 C -0.526 4.526 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.167 3.833 13 N -0.725 5.725 14 C 0.701 3.299 15 O -0.634 6.634 16 N -0.633 5.633 17 C 0.072 3.928 18 C 0.050 3.950 19 O -0.377 6.377 20 C 0.086 3.914 21 H 0.055 0.945 22 C 0.075 3.925 23 O -0.402 6.402 24 C 0.091 3.909 25 C -0.173 4.173 26 C -0.179 4.179 27 C -0.162 4.162 28 C 0.107 3.893 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.260 0.740 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.404 0.596 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.136 0.864 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.099 0.901 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.105 0.895 51 H 0.106 0.894 52 H 0.092 0.908 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 1.401 27.233 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.049 3.951 3 C -0.176 4.176 4 C -0.565 4.565 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.043 3.957 13 N -0.383 5.383 14 C 0.403 3.597 15 O -0.516 6.516 16 N -0.372 5.372 17 C -0.050 4.050 18 C -0.027 4.027 19 O -0.296 6.296 20 C 0.027 3.973 21 H 0.073 0.927 22 C -0.002 4.002 23 O -0.321 6.321 24 C 0.015 3.985 25 C -0.191 4.191 26 C -0.216 4.216 27 C -0.199 4.199 28 C -0.016 4.016 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.243 0.757 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.153 0.847 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.116 0.884 50 H 0.123 0.877 51 H 0.125 0.875 52 H 0.110 0.890 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.772 0.960 27.205 27.827 hybrid contribution 0.398 -0.391 -1.524 1.623 sum -5.374 0.569 25.681 26.243 Atomic orbital electron populations 1.21648 0.96981 0.98658 1.00306 1.18392 0.93374 0.93134 0.90200 1.21648 0.97927 0.97737 1.00284 1.21269 1.31645 1.12131 0.91455 0.93735 1.25435 0.95158 0.95606 1.00905 1.69903 1.37005 1.23239 1.23559 0.85709 0.78114 0.78722 0.80257 1.20077 1.20746 1.20726 1.21162 0.96844 0.94616 0.83116 1.45377 1.55736 1.33277 1.03865 1.16037 0.80577 0.81898 0.81199 1.90846 1.40938 1.33598 1.86256 1.47261 1.53494 1.31253 1.05149 1.22592 0.92336 0.87506 1.02600 1.23106 0.94941 1.01978 0.82706 1.87993 1.75214 1.38853 1.27553 1.22395 0.91990 0.87055 0.95910 0.92711 1.22431 0.86358 1.01039 0.90343 1.87890 1.29907 1.89420 1.24923 1.22131 0.95714 0.99340 0.81337 1.22147 0.98023 1.06733 0.92237 1.23150 1.02504 0.94058 1.01859 1.23068 1.04127 0.97035 0.95697 1.22023 0.96804 1.01466 0.81333 0.94655 0.91752 0.96336 0.96337 0.91755 0.94678 0.93005 0.94553 0.94599 0.75709 0.88583 0.88740 0.84660 0.93215 0.90836 0.89788 0.91891 0.92172 0.88255 0.88129 0.88355 0.87660 0.87529 0.89037 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 4 C -0.53 -27.81 8.01 25.60 0.21 -27.60 16 5 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 6 C 0.03 1.51 5.15 84.65 0.44 1.94 16 7 N -0.90 -47.43 9.35 21.45 0.20 -47.23 16 8 Si 0.94 42.54 29.54 68.60 2.03 44.56 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.17 7.24 4.51 86.38 0.39 7.63 16 13 N -0.73 -25.89 4.87 -478.53 -2.33 -28.23 16 14 C 0.70 25.22 8.31 179.06 1.49 26.71 16 15 O -0.63 -27.85 15.85 -3.99 -0.06 -27.91 16 16 N -0.63 -17.05 3.02 -835.36 -2.52 -19.57 16 17 C 0.07 1.43 6.63 86.35 0.57 2.00 16 18 C 0.05 0.91 6.99 72.08 0.50 1.41 16 19 O -0.38 -8.29 10.35 -144.69 -1.50 -9.79 16 20 C 0.09 1.82 3.06 30.69 0.09 1.91 16 21 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 22 C 0.08 1.29 5.60 71.98 0.40 1.69 16 23 O -0.40 -8.32 10.31 -144.69 -1.49 -9.82 16 24 C 0.09 1.35 6.22 71.98 0.45 1.80 16 25 C -0.17 -2.51 6.06 -10.79 -0.07 -2.57 16 26 C -0.18 -2.08 10.18 30.60 0.31 -1.77 16 27 C -0.16 -1.62 10.25 30.59 0.31 -1.31 16 28 C 0.11 2.45 5.91 86.35 0.51 2.96 16 29 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 30 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 34 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 35 H 0.26 13.21 8.31 -92.71 -0.77 12.43 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.04 1.65 8.14 -2.38 -0.02 1.64 16 38 H 0.40 12.46 3.67 -92.71 -0.34 12.12 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 1.79 5.66 -2.38 -0.01 1.78 16 41 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.06 0.76 7.87 -2.39 -0.02 0.74 16 47 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 48 H 0.10 1.05 8.03 -2.39 -0.02 1.03 16 49 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 52 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 53 H 0.09 2.34 7.12 -2.39 -0.02 2.32 16 Total: -1.00 -65.93 412.69 1.61 -64.32 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.55 Total: 25.83 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 6.75 Total: 7.82 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -4.65 Total: -95.03 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -3.05 Total: -47.52 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -65.93 1.61 -64.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459243154.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.583 kcal (2) G-P(sol) polarization free energy of solvation -65.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds