Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47197 * 2 1 4 4 C 1.50696 * 109.46999 * 240.00423 * 2 1 3 5 5 H 1.07999 * 119.99822 * 239.99947 * 4 2 1 6 6 C 1.37876 * 120.00339 * 59.99801 * 4 2 1 7 7 N 1.31514 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47118 * 89.99838 * 8 6 4 10 10 H 1.48499 * 109.47293 * 209.99842 * 8 6 4 11 11 H 1.48504 * 109.47104 * 330.00087 * 8 6 4 12 12 C 1.52993 * 109.47392 * 119.99957 * 2 1 3 13 13 N 1.46496 * 109.47551 * 300.00334 * 12 2 1 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 2 15 15 O 1.21579 * 119.99978 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99908 * 179.97438 * 14 13 12 17 17 C 1.46494 * 119.99635 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.54436 * 325.17316 * 17 16 14 19 19 C 1.53173 * 109.54534 * 85.44315 * 17 16 14 20 20 C 1.53098 * 109.15813 * 176.90359 * 19 17 16 21 21 O 1.42910 * 109.40514 * 302.32639 * 20 19 17 22 22 C 1.42820 * 114.14733 * 61.03180 * 21 20 19 23 23 C 1.53103 * 109.55747 * 59.27168 * 22 21 20 24 24 C 1.53105 * 109.16538 * 63.04269 * 23 22 21 25 25 O 1.42900 * 109.42005 * 57.49835 * 24 23 22 26 26 C 1.42905 * 114.12223 * 298.83479 * 25 24 23 27 27 C 1.53113 * 109.39382 * 61.18786 * 26 25 24 28 28 C 1.53006 * 109.58405 * 299.08586 * 22 21 20 29 29 H 1.09002 * 109.47097 * 299.99802 * 1 2 3 30 30 H 1.09001 * 109.47142 * 59.99766 * 1 2 3 31 31 H 1.08996 * 109.46698 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47061 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47061 * 300.00893 * 3 2 1 34 34 H 1.09002 * 109.46935 * 60.00099 * 3 2 1 35 35 H 0.97005 * 120.00032 * 180.02562 * 7 6 4 36 36 H 1.09000 * 109.47250 * 180.02562 * 12 2 1 37 37 H 1.09004 * 109.46862 * 60.00135 * 12 2 1 38 38 H 0.96999 * 119.99694 * 359.97438 * 13 12 2 39 39 H 0.96995 * 120.00015 * 359.72369 * 16 14 13 40 40 H 1.08993 * 109.52625 * 296.80939 * 19 17 16 41 41 H 1.09002 * 109.52084 * 57.00303 * 19 17 16 42 42 H 1.08996 * 109.48510 * 182.34017 * 20 19 17 43 43 H 1.09005 * 109.48814 * 62.31085 * 20 19 17 44 44 H 1.09001 * 109.51696 * 182.94717 * 23 22 21 45 45 H 1.08999 * 109.52223 * 303.13412 * 23 22 21 46 46 H 1.08997 * 109.48228 * 297.51346 * 24 23 22 47 47 H 1.09002 * 109.48552 * 177.49033 * 24 23 22 48 48 H 1.08998 * 109.48660 * 301.21210 * 26 25 24 49 49 H 1.09002 * 109.49767 * 181.16585 * 26 25 24 50 50 H 1.08993 * 109.52268 * 182.54967 * 27 26 25 51 51 H 1.08999 * 109.52514 * 62.35457 * 27 26 25 52 52 H 1.08994 * 109.51299 * 297.44654 * 28 22 21 53 53 H 1.09001 * 109.51194 * 177.28359 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4871 -0.1400 -5.1121 11 1 3.6309 -1.7563 -3.7121 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8779 -0.4909 3.6695 15 8 2.5769 -1.4794 3.7809 16 7 1.4290 0.1447 4.7700 17 6 1.7830 -0.3559 6.1005 18 1 1.8339 -1.4444 6.0788 19 6 3.1421 0.2143 6.5176 20 6 3.4676 -0.2517 7.9391 21 8 2.4280 0.1670 8.8258 22 6 1.1417 -0.3689 8.5125 23 6 1.1993 -1.8982 8.5560 24 6 1.5392 -2.3482 9.9794 25 8 0.5643 -1.8305 10.8869 26 6 0.5007 -0.4033 10.9240 27 6 0.1181 0.1248 9.5387 28 6 0.7229 0.0875 7.1135 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.7080 1.1610 -3.4844 36 1 3.1301 -0.7208 1.2494 37 1 1.6767 -1.7489 1.2491 38 1 0.9944 0.7581 2.3564 39 1 0.8746 0.9356 4.6810 40 1 3.9119 -0.1408 5.8326 41 1 3.1038 1.3034 6.4911 42 1 4.4143 0.1848 8.2570 43 1 3.5444 -1.3389 7.9567 44 1 0.2315 -2.3074 8.2659 45 1 1.9669 -2.2535 7.8685 46 1 2.5256 -1.9739 10.2531 47 1 1.5377 -3.4372 10.0265 48 1 1.4735 -0.0033 11.2097 49 1 -0.2486 -0.0914 11.6516 50 1 0.1132 1.2146 9.5530 51 1 -0.8727 -0.2415 9.2701 52 1 0.6344 1.1737 7.0962 53 1 -0.2367 -0.3610 6.8563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591856958.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -154.671787 kcal Electronic energy + Delta-G solvation = -31214.298055 eV Core-core repulsion = 27084.628724 eV Total energy + Delta-G solvation = -4129.669331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.91637 -40.87131 -38.89809 -38.17724 -36.20458 -35.00318 -34.27269 -33.10606 -32.22776 -31.76653 -29.70757 -27.56092 -27.46524 -26.77431 -25.08228 -24.88529 -24.29628 -22.27895 -21.67674 -20.58556 -20.41660 -19.48484 -17.90634 -17.77360 -17.26333 -16.94829 -16.86026 -16.66505 -16.44697 -16.38000 -15.84707 -15.58855 -15.51071 -15.25365 -14.91921 -14.68724 -14.46019 -14.37121 -13.98606 -13.66732 -13.56444 -13.34335 -13.20592 -13.09740 -12.94209 -12.70251 -12.59602 -12.48871 -12.40142 -12.25094 -12.15898 -12.13751 -11.90254 -11.50210 -11.47657 -11.37323 -11.21928 -11.06954 -10.70582 -10.65949 -10.40680 -10.29188 -10.27749 -9.67829 -8.02378 -6.17764 1.42327 1.45200 1.53231 1.76548 2.19823 2.45992 2.69785 2.98066 3.21255 3.35674 3.47283 3.71375 3.72974 3.82596 3.97804 4.06467 4.10293 4.26851 4.31539 4.34898 4.42868 4.46643 4.53585 4.61706 4.67705 4.70568 4.71717 4.78874 4.81433 4.86029 4.91350 4.98389 5.01491 5.05432 5.06238 5.09209 5.11035 5.20269 5.22191 5.25063 5.38799 5.54579 5.63354 5.67468 5.67531 6.07420 6.15566 6.22170 6.22601 6.27429 6.43945 6.86461 7.16446 7.49824 7.64062 8.96525 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.002003 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.443506 B =13974.923343 C =14064.281058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.527 4.527 5 H 0.044 0.956 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.169 3.831 13 N -0.726 5.726 14 C 0.697 3.303 15 O -0.640 6.640 16 N -0.729 5.729 17 C 0.163 3.837 18 H 0.069 0.931 19 C -0.162 4.162 20 C 0.065 3.935 21 O -0.375 6.375 22 C 0.122 3.878 23 C -0.185 4.185 24 C 0.065 3.935 25 O -0.401 6.401 26 C 0.059 3.941 27 C -0.136 4.136 28 C -0.139 4.139 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.260 0.740 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.405 0.595 39 H 0.409 0.591 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.055 0.945 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.100 0.900 48 H 0.054 0.946 49 H 0.109 0.891 50 H 0.094 0.906 51 H 0.093 0.907 52 H 0.092 0.908 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.417 2.487 26.411 26.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.177 4.177 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.044 3.956 13 N -0.381 5.381 14 C 0.397 3.603 15 O -0.522 6.522 16 N -0.385 5.385 17 C 0.058 3.942 18 H 0.087 0.913 19 C -0.201 4.201 20 C -0.012 4.012 21 O -0.294 6.294 22 C 0.082 3.918 23 C -0.223 4.223 24 C -0.011 4.011 25 O -0.321 6.321 26 C -0.017 4.017 27 C -0.173 4.173 28 C -0.177 4.177 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.242 0.758 39 H 0.245 0.755 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.129 0.871 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.118 0.882 48 H 0.072 0.928 49 H 0.127 0.873 50 H 0.113 0.887 51 H 0.112 0.888 52 H 0.111 0.889 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.963 1.717 26.608 26.735 hybrid contribution 0.247 0.040 -1.982 1.998 sum -1.716 1.757 24.625 24.747 Atomic orbital electron populations 1.21659 0.97077 0.98621 1.00364 1.18361 0.93284 0.93051 0.90229 1.21655 0.97861 0.97834 1.00347 1.21261 1.31659 1.12122 0.91552 0.93784 1.25451 0.95206 0.95615 1.00957 1.69906 1.37004 1.23260 1.23584 0.85765 0.78651 0.78492 0.79928 1.20499 1.20819 1.20128 1.21094 0.96580 0.94618 0.83261 1.45210 1.55815 1.33184 1.03927 1.16202 0.80137 0.82643 0.81308 1.90849 1.44897 1.29774 1.86665 1.45035 1.56679 1.32932 1.03881 1.20836 0.94398 0.98625 0.80342 0.91317 1.22569 0.97585 1.02167 0.97779 1.22594 0.91280 0.99551 0.87807 1.87930 1.16629 1.71664 1.53168 1.21419 0.84482 0.92133 0.93784 1.22841 1.03985 0.96582 0.98880 1.22529 0.91554 0.99488 0.87543 1.87893 1.59522 1.21872 1.62778 1.22670 1.02115 0.80101 0.96824 1.22196 0.97793 1.02898 0.94430 1.22410 0.98665 1.03416 0.93239 0.94423 0.91911 0.96392 0.96406 0.91917 0.94448 0.93037 0.94793 0.94747 0.75838 0.75450 0.92427 0.90309 0.87129 0.92656 0.89783 0.90559 0.92809 0.88151 0.92763 0.87256 0.88713 0.88836 0.88947 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 2 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 3 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 4 C -0.53 -27.88 8.01 25.60 0.21 -27.68 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.44 5.15 84.65 0.44 1.88 16 7 N -0.90 -47.70 9.35 21.45 0.20 -47.49 16 8 Si 0.94 42.59 29.54 68.60 2.03 44.62 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.17 7.24 4.50 86.38 0.39 7.63 16 13 N -0.73 -24.89 4.96 -478.55 -2.37 -27.26 16 14 C 0.70 23.65 8.54 179.05 1.53 25.18 16 15 O -0.64 -27.26 16.00 -3.96 -0.06 -27.33 16 16 N -0.73 -17.15 5.09 -457.25 -2.33 -19.47 16 17 C 0.16 3.41 2.24 45.11 0.10 3.52 16 18 H 0.07 1.77 6.16 -2.39 -0.01 1.76 16 19 C -0.16 -3.26 5.72 30.68 0.18 -3.08 16 20 C 0.06 1.07 6.52 72.01 0.47 1.54 16 21 O -0.37 -6.27 9.20 -148.98 -1.37 -7.64 16 22 C 0.12 1.79 0.68 -10.72 -0.01 1.78 16 23 C -0.19 -2.90 4.26 30.66 0.13 -2.77 16 24 C 0.07 1.02 6.70 72.02 0.48 1.50 16 25 O -0.40 -7.12 10.76 -148.98 -1.60 -8.73 16 26 C 0.06 0.78 6.70 72.02 0.48 1.26 16 27 C -0.14 -1.59 5.15 30.67 0.16 -1.44 16 28 C -0.14 -2.04 4.39 30.66 0.13 -1.90 16 29 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 30 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 34 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 35 H 0.26 13.29 8.31 -92.70 -0.77 12.52 16 36 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.40 11.87 6.18 -92.71 -0.57 11.29 16 39 H 0.41 7.12 8.62 -92.71 -0.80 6.32 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 0.92 6.30 -2.38 -0.02 0.91 16 44 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.31 5.03 -2.39 -0.01 1.30 16 46 H 0.05 0.84 7.82 -2.39 -0.02 0.82 16 47 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.05 0.76 7.82 -2.39 -0.02 0.75 16 49 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 53 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -64.27 395.26 -0.15 -64.42 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.46 Total: 28.47 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 5.82 Total: 0.42 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -4.50 Total: -94.23 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -3.04 Total: -43.69 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -64.27 -0.15 -64.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591856958.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.250 kcal (2) G-P(sol) polarization free energy of solvation -64.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds