Wall clock time and date at job start Sat Apr 11 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46855 * 2 1 4 4 C 1.53001 * 109.47416 * 120.00142 * 2 1 3 5 5 H 1.08995 * 109.47208 * 178.55399 * 4 2 1 6 6 N 1.46901 * 109.46903 * 58.55557 * 4 2 1 7 7 C 1.46903 * 110.99745 * 100.73122 * 6 4 2 8 8 C 1.53178 * 109.54116 * 274.51754 * 7 6 4 9 9 C 1.53099 * 109.15775 * 183.15481 * 8 7 6 10 10 O 1.42899 * 109.41363 * 57.61112 * 9 8 7 11 11 C 1.42896 * 114.10063 * 298.83438 * 10 9 8 12 12 C 1.53098 * 109.41061 * 61.16318 * 11 10 9 13 13 C 1.50694 * 109.46900 * 298.55784 * 4 2 1 14 14 O 1.21278 * 120.00535 * 82.16457 * 13 4 2 15 15 N 1.34783 * 120.00089 * 262.15807 * 13 4 2 16 16 C 1.47023 * 125.64618 * 4.19486 * 15 13 4 17 17 C 1.54362 * 107.28990 * 181.12410 * 16 15 13 18 18 C 1.55162 * 102.92080 * 22.13964 * 17 16 15 19 19 O 1.42897 * 111.00316 * 82.63806 * 18 17 16 20 20 C 1.50699 * 111.00392 * 206.45243 * 18 17 16 21 21 H 1.08007 * 119.99887 * 120.43489 * 20 18 17 22 22 C 1.37876 * 120.00000 * 300.16298 * 20 18 17 23 23 N 1.31518 * 119.99924 * 355.10402 * 22 20 18 24 24 Si 1.86797 * 119.99947 * 175.11167 * 22 20 18 25 25 H 1.48500 * 109.47737 * 94.98929 * 24 22 20 26 26 H 1.48507 * 109.46815 * 214.99087 * 24 22 20 27 27 H 1.48504 * 109.47054 * 334.98535 * 24 22 20 28 28 C 1.47423 * 125.65035 * 184.23031 * 15 13 4 29 29 H 1.08998 * 109.47116 * 299.99270 * 1 2 3 30 30 H 1.08994 * 109.47311 * 60.00220 * 1 2 3 31 31 H 1.09003 * 109.46939 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46692 * 240.00108 * 2 1 3 33 33 H 1.08993 * 109.47480 * 64.57196 * 3 2 1 34 34 H 1.09008 * 109.47077 * 184.57129 * 3 2 1 35 35 H 1.09006 * 109.47525 * 304.56756 * 3 2 1 36 36 H 1.00903 * 110.99757 * 224.67911 * 6 4 2 37 37 H 1.08994 * 109.54355 * 34.78913 * 7 6 4 38 38 H 1.08996 * 109.52242 * 303.05503 * 8 7 6 39 39 H 1.08992 * 109.52011 * 63.25213 * 8 7 6 40 40 H 1.08997 * 109.48211 * 297.62279 * 9 8 7 41 41 H 1.09002 * 109.48074 * 177.59866 * 9 8 7 42 42 H 1.08999 * 109.48486 * 301.18051 * 11 10 9 43 43 H 1.08996 * 109.49424 * 181.15083 * 11 10 9 44 44 H 1.09002 * 109.52074 * 182.48962 * 12 11 10 45 45 H 1.08997 * 109.52384 * 62.29854 * 12 11 10 46 46 H 1.08999 * 109.88460 * 300.51142 * 16 15 13 47 47 H 1.09002 * 109.88324 * 61.67435 * 16 15 13 48 48 H 1.08999 * 110.70895 * 263.79478 * 17 16 15 49 49 H 1.09001 * 110.75660 * 140.50369 * 17 16 15 50 50 H 0.96694 * 114.00172 * 59.22421 * 19 18 17 51 51 H 0.97001 * 119.99864 * 180.02562 * 23 22 20 52 52 H 1.08995 * 110.36425 * 37.00360 * 28 15 13 53 53 H 1.08998 * 110.37057 * 274.67741 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1297 -0.7438 1.2363 6 7 1.5221 -2.0958 1.2667 7 6 2.5425 -3.0487 0.8097 8 6 2.5110 -3.1391 -0.7191 9 6 3.5224 -4.1915 -1.1812 10 8 3.2124 -5.4471 -0.5734 11 6 3.2727 -5.4351 0.8542 12 6 2.2513 -4.4327 1.3981 13 6 1.5672 0.0094 2.4794 14 8 0.4488 -0.1834 2.9069 15 7 2.3872 0.8773 3.1046 16 6 3.7285 1.2697 2.6479 17 6 4.2977 2.2559 3.6901 18 6 3.4740 1.9287 4.9636 19 8 4.0218 0.8030 5.6526 20 6 3.3885 3.1264 5.8742 21 1 2.4250 3.5408 6.1323 22 6 4.5398 3.6898 6.3822 23 7 5.7052 3.1257 6.1513 24 14 4.4442 5.2541 7.3987 25 1 4.4010 4.9052 8.8415 26 1 5.6388 6.0939 7.1280 27 1 3.2171 6.0069 7.0344 28 6 2.0881 1.5898 4.3601 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.7450 1.9321 0.9280 34 1 3.1269 1.4436 -0.0819 35 1 1.6113 1.9794 -0.8463 36 1 1.1822 -2.3425 2.1842 37 1 3.5268 -2.7134 1.1363 38 1 1.5117 -3.4259 -1.0465 39 1 2.7716 -2.1710 -1.1466 40 1 4.5263 -3.8839 -0.8886 41 1 3.4740 -4.2906 -2.2656 42 1 4.2733 -5.1438 1.1734 43 1 3.0445 -6.4300 1.2363 44 1 2.3262 -4.3896 2.4847 45 1 1.2467 -4.7455 1.1135 46 1 4.3695 0.3905 2.5817 47 1 3.6613 1.7561 1.6748 48 1 4.1306 3.2865 3.3770 49 1 5.3585 2.0702 3.8587 50 1 4.9390 0.9224 5.9343 51 1 6.5151 3.5219 6.5091 52 1 1.5267 0.9460 5.0371 53 1 1.5304 2.5034 4.1543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592949568.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:11 Heat of formation + Delta-G solvation = -155.268829 kcal Electronic energy + Delta-G solvation = -32314.706878 eV Core-core repulsion = 28185.011658 eV Total energy + Delta-G solvation = -4129.695220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66038 -40.32621 -39.23680 -37.47809 -36.15250 -35.44323 -34.23955 -32.12619 -32.03578 -31.50646 -30.17831 -28.09900 -27.69519 -26.46702 -24.69205 -24.32285 -23.70855 -22.18025 -21.40578 -21.16193 -19.59577 -19.07446 -18.41792 -17.30304 -17.15329 -17.11528 -16.91825 -16.76819 -16.22663 -16.07038 -15.75585 -15.64547 -15.38051 -14.90455 -14.74538 -14.60172 -14.33364 -14.16199 -13.90756 -13.58316 -13.45069 -13.30628 -13.24399 -13.17468 -13.10177 -12.87263 -12.76032 -12.67047 -12.43106 -12.26022 -12.23804 -11.95220 -11.91061 -11.88771 -11.76960 -11.51120 -11.31556 -11.23382 -10.75615 -10.62134 -10.48336 -10.17943 -9.59447 -9.53988 -8.26235 -6.39810 1.40010 1.44047 1.52409 1.55216 1.96291 2.38873 2.88949 2.99244 3.03726 3.40035 3.71136 3.78899 3.84966 3.91547 3.98230 4.01851 4.05599 4.18857 4.22739 4.29423 4.31888 4.32858 4.38643 4.54331 4.56323 4.60362 4.62088 4.66519 4.76045 4.79825 4.83986 4.84834 4.91688 5.01519 5.08608 5.10517 5.12793 5.15127 5.19718 5.23006 5.34467 5.42667 5.44337 5.49654 5.57118 5.74936 5.90925 6.08305 6.16079 6.27793 6.59350 6.64387 7.11439 7.29310 7.39818 8.80025 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.002934 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.741391 B = 9541.335910 C =10243.953817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 C -0.160 4.160 4 C 0.089 3.911 5 H 0.079 0.921 6 N -0.662 5.662 7 C 0.082 3.918 8 C -0.136 4.136 9 C 0.058 3.942 10 O -0.401 6.401 11 C 0.065 3.935 12 C -0.155 4.155 13 C 0.516 3.484 14 O -0.576 6.576 15 N -0.605 5.605 16 C 0.100 3.900 17 C -0.126 4.126 18 C 0.236 3.764 19 O -0.593 6.593 20 C -0.562 4.562 21 H 0.051 0.949 22 C 0.040 3.960 23 N -0.904 5.904 24 Si 0.956 3.044 25 H -0.281 1.281 26 H -0.276 1.276 27 H -0.273 1.273 28 C 0.127 3.873 29 H 0.026 0.974 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.342 0.658 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.110 0.890 42 H 0.057 0.943 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.093 0.907 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.378 0.622 51 H 0.271 0.729 52 H 0.043 0.957 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.047 -10.214 -16.416 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.087 4.087 3 C -0.217 4.217 4 C -0.024 4.024 5 H 0.097 0.903 6 N -0.294 5.294 7 C -0.027 4.027 8 C -0.175 4.175 9 C -0.019 4.019 10 O -0.320 6.320 11 C -0.012 4.012 12 C -0.194 4.194 13 C 0.305 3.695 14 O -0.456 6.456 15 N -0.338 5.338 16 C -0.022 4.022 17 C -0.165 4.165 18 C 0.196 3.804 19 O -0.402 6.402 20 C -0.601 4.601 21 H 0.070 0.930 22 C -0.162 4.162 23 N -0.542 5.542 24 Si 0.782 3.218 25 H -0.207 1.207 26 H -0.201 1.201 27 H -0.197 1.197 28 C 0.004 3.996 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.162 0.838 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.128 0.872 42 H 0.075 0.925 43 H 0.125 0.875 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.111 0.889 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.227 0.773 51 H 0.081 0.919 52 H 0.062 0.938 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.343 -10.703 -17.029 20.158 hybrid contribution 1.038 1.513 2.347 2.979 sum -0.305 -9.191 -14.682 17.324 Atomic orbital electron populations 1.21672 0.94937 1.02183 1.00347 1.21089 0.96607 0.95227 0.95783 1.22116 1.02007 0.95721 1.01890 1.21748 0.98732 0.89634 0.92258 0.90317 1.60571 1.36237 0.99582 1.33019 1.21811 0.92777 0.91573 0.96572 1.22235 1.00983 1.00254 0.93993 1.22757 0.97111 0.83006 0.98998 1.87903 1.91024 1.33143 1.19957 1.22608 0.97777 1.00270 0.80546 1.22364 1.01448 0.94783 1.00770 1.21067 0.84242 0.78996 0.85216 1.90649 1.20831 1.66044 1.68034 1.48709 1.17850 1.42803 1.24411 1.22397 0.82194 0.98639 0.98994 1.22958 1.00630 0.97760 0.95121 1.19766 0.87951 0.83679 0.88971 1.86128 1.33173 1.42620 1.78269 1.21647 0.93314 1.13889 1.31213 0.93050 1.25553 0.94863 0.99699 0.96080 1.69755 0.98340 1.40655 1.45485 0.85573 0.77884 0.79650 0.78672 1.20722 1.20084 1.19745 1.22093 0.97851 0.95046 0.84623 0.95438 0.92006 0.91957 0.87881 0.94694 0.90784 0.90553 0.83834 0.93565 0.91047 0.89802 0.92477 0.87208 0.92503 0.87510 0.90959 0.90654 0.91379 0.88867 0.91858 0.90618 0.77309 0.91945 0.93834 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 8.62 71.98 0.62 -2.78 16 2 C -0.07 -1.49 2.87 -10.79 -0.03 -1.52 16 3 C -0.16 -3.41 7.63 71.98 0.55 -2.86 16 4 C 0.09 2.30 1.99 44.17 0.09 2.39 16 5 H 0.08 1.87 5.87 -2.39 -0.01 1.86 16 6 N -0.66 -16.15 5.27 -472.71 -2.49 -18.64 16 7 C 0.08 1.60 2.54 45.03 0.11 1.71 16 8 C -0.14 -2.22 5.45 30.69 0.17 -2.05 16 9 C 0.06 0.85 6.84 72.02 0.49 1.35 16 10 O -0.40 -7.63 10.76 -148.98 -1.60 -9.23 16 11 C 0.07 1.06 6.84 72.01 0.49 1.55 16 12 C -0.16 -2.84 5.40 30.69 0.17 -2.68 16 13 C 0.52 18.24 5.02 87.65 0.44 18.68 16 14 O -0.58 -24.39 15.10 -3.02 -0.05 -24.43 16 15 N -0.61 -22.58 2.88 -811.72 -2.34 -24.92 16 16 C 0.10 3.25 5.71 86.74 0.49 3.74 16 17 C -0.13 -5.11 5.38 31.80 0.17 -4.94 16 18 C 0.24 11.18 0.87 -10.15 -0.01 11.18 16 19 O -0.59 -29.77 13.16 -148.98 -1.96 -31.73 16 20 C -0.56 -29.17 8.27 25.60 0.21 -28.96 16 21 H 0.05 2.72 7.80 -2.91 -0.02 2.70 16 22 C 0.04 2.00 5.27 84.65 0.45 2.45 16 23 N -0.90 -45.06 10.82 21.45 0.23 -44.82 16 24 Si 0.96 40.54 29.54 68.60 2.03 42.57 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 26 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 C 0.13 5.67 6.07 86.86 0.53 6.19 16 29 H 0.03 0.87 6.38 -2.39 -0.02 0.85 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.64 7.56 -2.39 -0.02 1.62 16 32 H 0.10 1.80 6.16 -2.39 -0.01 1.79 16 33 H 0.03 0.95 6.05 -2.39 -0.01 0.93 16 34 H 0.07 1.33 6.93 -2.38 -0.02 1.32 16 35 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.34 9.79 7.35 -89.69 -0.66 9.13 16 37 H 0.05 0.92 7.35 -2.39 -0.02 0.91 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.19 6.30 -2.39 -0.02 1.18 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.07 2.05 7.65 -2.39 -0.02 2.03 16 47 H 0.09 2.49 5.01 -2.39 -0.01 2.48 16 48 H 0.06 2.61 8.03 -2.39 -0.02 2.59 16 49 H 0.08 3.21 7.59 -2.39 -0.02 3.19 16 50 H 0.38 18.87 7.56 -74.06 -0.56 18.31 16 51 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 52 H 0.04 2.12 8.08 -2.39 -0.02 2.10 16 53 H 0.07 3.02 8.03 -2.39 -0.02 3.00 16 Total: -1.00 -59.79 394.93 -1.53 -61.33 By element: Atomic # 1 Polarization: 46.72 SS G_CDS: -0.30 Total: 46.42 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 4.94 Total: 3.46 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -4.60 Total: -88.38 kcal Atomic # 8 Polarization: -61.79 SS G_CDS: -3.61 Total: -65.40 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -59.79 -1.53 -61.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592949568.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.940 kcal (2) G-P(sol) polarization free energy of solvation -59.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds