Wall clock time and date at job start Sat Apr 11 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 116.99867 * 2 1 4 4 O 1.20825 * 120.00406 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99614 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47339 * 60.00097 * 5 3 2 7 7 C 1.53002 * 109.47384 * 299.99947 * 5 3 2 8 8 C 1.53006 * 109.46932 * 179.97438 * 5 3 2 9 9 H 1.08995 * 109.49765 * 179.97438 * 8 5 3 10 10 C 1.53040 * 109.49632 * 300.00219 * 8 5 3 11 11 C 1.53041 * 109.53561 * 181.31759 * 10 8 5 12 12 C 1.53195 * 109.31107 * 298.63399 * 11 10 8 13 13 N 1.46922 * 108.77660 * 54.63578 * 12 11 10 14 14 C 1.34775 * 120.63009 * 126.37013 * 13 12 11 15 15 O 1.21290 * 120.00029 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00325 * 359.97438 * 14 13 12 17 17 H 1.09002 * 109.47110 * 320.00048 * 16 14 13 18 18 N 1.46896 * 109.47576 * 200.00281 * 16 14 13 19 19 C 1.52998 * 109.47262 * 79.99871 * 16 14 13 20 20 C 1.52999 * 109.47306 * 185.00298 * 19 16 14 21 21 C 1.50702 * 109.47522 * 180.02562 * 20 19 16 22 22 H 1.08002 * 119.99446 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00072 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99826 * 179.72119 * 23 21 20 25 25 Si 1.86800 * 120.00406 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72576 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72423 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72459 * 25 23 21 29 29 C 1.46928 * 118.73986 * 306.64147 * 13 12 11 30 30 H 1.09000 * 109.47331 * 60.00097 * 1 2 3 31 31 H 1.09008 * 109.47270 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47156 * 299.99606 * 1 2 3 33 33 H 1.08994 * 109.47461 * 179.97438 * 6 5 3 34 34 H 1.09004 * 109.47061 * 300.00169 * 6 5 3 35 35 H 1.09006 * 109.46621 * 59.99551 * 6 5 3 36 36 H 1.08999 * 109.46822 * 300.00236 * 7 5 3 37 37 H 1.09004 * 109.46761 * 59.99987 * 7 5 3 38 38 H 1.08994 * 109.46746 * 180.02562 * 7 5 3 39 39 H 1.09000 * 109.46188 * 61.29420 * 10 8 5 40 40 H 1.08997 * 109.46318 * 301.33477 * 10 8 5 41 41 H 1.08999 * 109.49904 * 178.68785 * 11 10 8 42 42 H 1.08996 * 109.52610 * 58.59677 * 11 10 8 43 43 H 1.09000 * 109.58787 * 294.84780 * 12 11 10 44 44 H 1.09005 * 109.58836 * 174.42518 * 12 11 10 45 45 H 1.00902 * 111.00138 * 299.99667 * 18 16 14 46 46 H 1.00905 * 111.00432 * 63.94889 * 18 16 14 47 47 H 1.08995 * 109.47215 * 65.00476 * 19 16 14 48 48 H 1.09001 * 109.47042 * 305.00278 * 19 16 14 49 49 H 1.09000 * 109.47527 * 59.99882 * 20 19 16 50 50 H 1.09001 * 109.47054 * 299.99973 * 20 19 16 51 51 H 0.96999 * 120.00128 * 180.27192 * 24 23 21 52 52 H 1.09001 * 109.58950 * 173.14465 * 29 13 12 53 53 H 1.08999 * 109.58797 * 293.57116 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1129 0.5815 -1.2502 7 6 4.1139 0.5809 1.2483 8 6 4.0002 2.7420 -0.0011 9 1 5.0886 2.7996 -0.0011 10 6 3.4528 3.4361 -1.2504 11 6 3.9136 4.8953 -1.2685 12 6 3.3623 5.6161 -0.0343 13 7 3.7638 4.8714 1.1669 14 6 4.4083 5.4909 2.1755 15 8 4.7341 4.8652 3.1621 16 6 4.7242 6.9611 2.0774 17 1 5.0406 7.1978 1.0616 18 7 5.8037 7.2938 3.0165 19 6 3.4765 7.7752 2.4256 20 6 3.7601 9.2625 2.2059 21 6 2.5313 10.0645 2.5494 22 1 1.6373 9.5633 2.8900 23 6 2.5481 11.4377 2.4279 24 7 1.4740 12.1371 2.7225 25 14 4.0942 12.3045 1.8382 26 1 4.9430 12.6517 3.0061 27 1 4.8485 11.4061 0.9276 28 1 3.7201 13.5446 1.1120 29 6 3.4548 3.4371 1.2451 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8901 33 1 5.2013 0.6388 -1.2508 34 1 3.8038 -0.4638 -1.2503 35 1 3.7227 1.0758 -2.1399 36 1 3.7245 1.0749 2.1385 37 1 3.8048 -0.4644 1.2482 38 1 5.2024 0.6384 1.2480 39 1 2.3635 3.3993 -1.2384 40 1 3.8232 2.9273 -2.1403 41 1 3.5428 5.3828 -2.1702 42 1 5.0028 4.9336 -1.2558 43 1 2.2746 5.6585 -0.0913 44 1 3.7675 6.6270 0.0100 45 1 5.5347 7.0834 3.9659 46 1 6.6581 6.8176 2.7688 47 1 3.2119 7.6062 3.4694 48 1 2.6500 7.4647 1.7864 49 1 4.0247 9.4317 1.1621 50 1 4.5866 9.5731 2.8451 51 1 1.4845 13.1029 2.6333 52 1 3.9211 3.0107 2.1333 53 1 2.3748 3.2982 1.2945 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592967621.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:23 Heat of formation + Delta-G solvation = -156.356552 kcal Electronic energy + Delta-G solvation = -31840.178001 eV Core-core repulsion = 27710.435613 eV Total energy + Delta-G solvation = -4129.742388 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.38835 -41.24917 -39.23085 -37.40335 -36.95001 -36.57119 -34.80593 -33.40168 -32.30393 -31.37221 -28.85142 -28.65435 -28.36823 -26.44523 -25.34319 -24.44051 -23.78903 -22.37169 -21.62570 -20.80633 -20.01347 -18.90286 -18.48412 -18.29112 -17.58523 -17.41132 -17.02229 -16.84325 -16.20623 -15.95622 -15.59944 -15.51912 -15.28714 -15.07379 -14.88353 -14.72150 -14.62521 -14.44630 -14.10905 -13.93891 -13.79931 -13.55032 -13.43580 -13.26637 -13.05095 -12.89205 -12.82976 -12.67856 -12.51813 -12.36764 -12.19386 -11.96600 -11.91664 -11.80215 -11.63111 -11.58589 -11.53815 -11.29690 -11.26045 -11.07753 -10.93614 -10.71598 -9.67925 -9.65678 -8.25286 -6.29050 1.12534 1.41470 1.43073 1.46003 1.56083 1.70922 1.94962 2.41492 3.11159 3.34110 3.39655 3.56535 3.67570 3.69417 3.87614 3.95157 4.00605 4.08158 4.15184 4.20955 4.25897 4.28367 4.30941 4.39267 4.50899 4.62580 4.67540 4.67609 4.71999 4.75046 4.77075 4.82630 4.84528 4.94647 4.95601 5.02018 5.06101 5.06883 5.11697 5.19442 5.28381 5.35315 5.47358 5.48919 5.61098 5.63511 5.71356 6.03383 6.31132 6.33007 6.49146 6.71443 6.79178 7.03368 7.35403 8.91873 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017577 B = 0.002637 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.628538 B =10614.926473 C =11051.081836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.464 3.536 4 O -0.521 6.521 5 C -0.043 4.043 6 C -0.138 4.138 7 C -0.145 4.145 8 C -0.072 4.072 9 H 0.097 0.903 10 C -0.128 4.128 11 C -0.125 4.125 12 C 0.095 3.905 13 N -0.599 5.599 14 C 0.484 3.516 15 O -0.585 6.585 16 C 0.085 3.915 17 H 0.120 0.880 18 N -0.815 5.815 19 C -0.079 4.079 20 C 0.006 3.994 21 C -0.532 4.532 22 H 0.024 0.976 23 C 0.002 3.998 24 N -0.956 5.956 25 Si 0.956 3.044 26 H -0.272 1.272 27 H -0.239 1.239 28 H -0.286 1.286 29 C 0.101 3.899 30 H 0.062 0.938 31 H 0.131 0.869 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.345 0.655 46 H 0.349 0.651 47 H 0.036 0.964 48 H 0.059 0.941 49 H 0.026 0.974 50 H 0.029 0.971 51 H 0.265 0.735 52 H 0.073 0.927 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.681 -29.730 -13.397 33.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.308 3.692 4 O -0.411 6.411 5 C -0.044 4.044 6 C -0.195 4.195 7 C -0.202 4.202 8 C -0.092 4.092 9 H 0.115 0.885 10 C -0.165 4.165 11 C -0.163 4.163 12 C -0.028 4.028 13 N -0.331 5.331 14 C 0.271 3.729 15 O -0.466 6.466 16 C -0.030 4.030 17 H 0.137 0.863 18 N -0.344 5.344 19 C -0.117 4.117 20 C -0.031 4.031 21 C -0.570 4.570 22 H 0.043 0.957 23 C -0.194 4.194 24 N -0.597 5.597 25 Si 0.779 3.221 26 H -0.197 1.197 27 H -0.162 1.162 28 H -0.212 1.212 29 C -0.022 4.022 30 H 0.080 0.920 31 H 0.149 0.851 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.112 0.888 45 H 0.159 0.841 46 H 0.163 0.837 47 H 0.055 0.945 48 H 0.078 0.922 49 H 0.044 0.956 50 H 0.047 0.953 51 H 0.074 0.926 52 H 0.091 0.909 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.452 -28.851 -13.132 32.563 hybrid contribution -0.660 -0.080 0.665 0.940 sum 6.792 -28.931 -12.467 32.227 Atomic orbital electron populations 1.23503 0.75276 1.05543 1.02215 1.86489 1.24438 1.32897 1.83566 1.24208 0.92599 0.81151 0.71225 1.90607 1.67900 1.36738 1.45807 1.20622 0.85804 0.97078 1.00938 1.21936 1.02940 1.00856 0.93786 1.21958 1.02890 1.01155 0.94190 1.21328 1.01214 0.91479 0.95137 0.88531 1.21901 1.02197 0.95324 0.97088 1.21869 1.01619 0.95740 0.97036 1.22053 1.00268 0.96277 0.84166 1.48211 1.56325 1.09963 1.18580 1.22451 0.76577 0.91723 0.82121 1.90611 1.55588 1.68237 1.32161 1.21663 0.94135 0.87405 0.99825 0.86251 1.59048 1.05062 1.64009 1.06326 1.21260 0.94451 0.95952 1.00085 1.19345 0.95105 0.91728 0.96963 1.21543 0.98981 0.92319 1.44187 0.95715 1.26038 0.99878 0.98437 0.95055 1.70089 1.31192 1.07161 1.51260 0.85577 0.79216 0.77849 0.79464 1.19708 1.16198 1.21199 1.21913 1.01060 0.80212 0.98980 0.91952 0.85094 0.92760 0.89095 0.90305 0.91426 0.93554 0.89879 0.89320 0.91090 0.89369 0.88802 0.90583 0.91845 0.88831 0.84139 0.83734 0.94476 0.92200 0.95591 0.95287 0.92612 0.90871 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -5.78 10.37 -51.36 -0.53 -6.32 16 3 C 0.46 8.77 5.95 71.24 0.42 9.19 16 4 O -0.52 -12.97 11.12 21.97 0.24 -12.73 16 5 C -0.04 -0.61 0.53 -52.92 -0.03 -0.64 16 6 C -0.14 -1.19 8.05 71.98 0.58 -0.61 16 7 C -0.14 -1.88 8.06 71.98 0.58 -1.30 16 8 C -0.07 -1.26 1.66 -10.86 -0.02 -1.28 16 9 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 10 C -0.13 -2.12 4.54 30.62 0.14 -1.98 16 11 C -0.12 -2.11 6.08 30.67 0.19 -1.92 16 12 C 0.09 2.24 5.59 86.36 0.48 2.73 16 13 N -0.60 -16.55 2.98 -819.72 -2.44 -18.99 16 14 C 0.48 15.69 6.94 87.66 0.61 16.30 16 15 O -0.58 -22.02 15.66 -3.06 -0.05 -22.07 16 16 C 0.09 2.74 2.30 44.17 0.10 2.84 16 17 H 0.12 3.34 6.54 -2.39 -0.02 3.33 16 18 N -0.82 -25.40 8.44 -171.82 -1.45 -26.85 16 19 C -0.08 -3.21 4.54 30.59 0.14 -3.07 16 20 C 0.01 0.29 3.93 29.85 0.12 0.40 16 21 C -0.53 -31.54 9.66 25.60 0.25 -31.29 16 22 H 0.02 1.62 7.99 -2.91 -0.02 1.60 16 23 C 0.00 0.12 5.47 84.65 0.46 0.58 16 24 N -0.96 -61.54 13.96 21.45 0.30 -61.24 16 25 Si 0.96 45.27 27.47 68.60 1.88 47.16 16 26 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 28 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 29 C 0.10 2.56 4.93 86.22 0.43 2.99 16 30 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 31 H 0.13 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.05 0.78 8.13 -2.38 -0.02 0.76 16 33 H 0.09 0.51 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.59 8.11 -2.39 -0.02 0.57 16 35 H 0.07 0.58 6.40 -2.38 -0.02 0.56 16 36 H 0.05 0.79 6.57 -2.39 -0.02 0.77 16 37 H 0.08 0.88 8.11 -2.39 -0.02 0.86 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.51 5.55 -2.39 -0.01 1.50 16 40 H 0.09 1.05 6.36 -2.39 -0.02 1.04 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.09 2.23 5.18 -2.38 -0.01 2.22 16 45 H 0.35 11.38 8.58 -89.69 -0.77 10.61 16 46 H 0.35 9.08 9.06 -89.69 -0.81 8.26 16 47 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.06 2.40 7.20 -2.39 -0.02 2.39 16 49 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 50 H 0.03 1.38 7.18 -2.39 -0.02 1.36 16 51 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 52 H 0.07 2.05 5.62 -2.39 -0.01 2.04 16 53 H 0.07 2.04 5.41 -2.39 -0.01 2.02 16 Total: -1.00 -77.25 400.30 2.89 -74.36 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: -0.71 Total: 32.20 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.64 Total: -5.52 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -3.59 Total: -107.08 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.34 Total: -41.11 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.16 kcal Total: -77.25 2.89 -74.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592967621.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.995 kcal (2) G-P(sol) polarization free energy of solvation -77.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds