Wall clock time and date at job start Sat Apr 11 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47651 * 2 1 4 4 O 1.45201 * 109.47262 * 119.99790 * 2 1 3 5 5 C 1.34232 * 117.00291 * 149.99934 * 4 2 1 6 6 O 1.20826 * 119.99755 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99878 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.46679 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.46795 * 304.99849 * 8 7 5 10 10 N 1.46500 * 109.47251 * 64.99962 * 8 7 5 11 11 C 1.34773 * 120.00034 * 205.00036 * 10 8 7 12 12 O 1.21594 * 119.99812 * 5.21944 * 11 10 8 13 13 N 1.34774 * 120.00199 * 185.23037 * 11 10 8 14 14 C 1.46494 * 120.00162 * 185.02954 * 13 11 10 15 15 C 1.52999 * 109.47363 * 184.45349 * 14 13 11 16 16 C 1.50702 * 115.54869 * 305.40968 * 15 14 13 17 17 H 1.07997 * 120.00362 * 119.13157 * 16 15 14 18 18 C 1.37883 * 119.99490 * 298.85437 * 16 15 14 19 19 N 1.31516 * 119.99575 * 171.27258 * 18 16 15 20 20 Si 1.86799 * 120.00166 * 351.27191 * 18 16 15 21 21 H 1.48500 * 109.47235 * 93.51165 * 20 18 16 22 22 H 1.48502 * 109.46854 * 213.51270 * 20 18 16 23 23 H 1.48501 * 109.47161 * 333.50776 * 20 18 16 24 24 C 1.53002 * 117.52024 * 91.10466 * 15 14 13 25 25 C 1.52998 * 117.50205 * 159.73655 * 15 14 13 26 26 C 1.53001 * 109.46903 * 184.99897 * 8 7 5 27 27 C 1.53004 * 109.47006 * 59.99723 * 26 8 7 28 28 C 1.52995 * 109.47210 * 179.97438 * 26 8 7 29 29 H 1.09000 * 109.46959 * 300.00138 * 1 2 3 30 30 H 1.09000 * 109.46837 * 60.00238 * 1 2 3 31 31 H 1.08998 * 109.47008 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47628 * 239.99561 * 2 1 3 33 33 H 1.08989 * 109.47590 * 180.02562 * 3 2 1 34 34 H 1.09009 * 109.46599 * 300.00328 * 3 2 1 35 35 H 1.09003 * 109.46963 * 59.99154 * 3 2 1 36 36 H 1.09000 * 109.47192 * 60.00202 * 7 5 4 37 37 H 1.09001 * 109.47019 * 299.99314 * 7 5 4 38 38 H 0.96998 * 119.99826 * 24.99551 * 10 8 7 39 39 H 0.96997 * 119.99787 * 5.02151 * 13 11 10 40 40 H 1.08997 * 109.47612 * 64.45087 * 14 13 11 41 41 H 1.08996 * 109.47195 * 304.45312 * 14 13 11 42 42 H 0.97001 * 119.99630 * 179.97438 * 19 18 16 43 43 H 1.08996 * 117.49864 * 214.97535 * 24 15 14 44 44 H 1.09001 * 117.49773 * 359.97438 * 24 15 14 45 45 H 1.09000 * 117.50013 * 359.97429 * 25 15 14 46 46 H 1.08999 * 117.49914 * 144.97224 * 25 15 14 47 47 H 1.09004 * 109.47122 * 299.99996 * 26 8 7 48 48 H 1.08996 * 109.46928 * 60.00502 * 27 26 8 49 49 H 1.08997 * 109.46889 * 180.02562 * 27 26 8 50 50 H 1.08993 * 109.47411 * 299.99858 * 27 26 8 51 51 H 1.09007 * 109.46955 * 59.99837 * 28 26 8 52 52 H 1.08997 * 109.47241 * 179.97438 * 28 26 8 53 53 H 1.08996 * 109.47501 * 299.99974 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 3.1937 -1.3170 1.0852 6 8 3.8014 -1.2997 0.0411 7 6 3.7594 -2.0496 2.2745 8 6 5.1018 -2.6781 1.8949 9 1 4.9714 -3.3103 1.0166 10 7 6.0693 -1.6196 1.5955 11 6 7.1140 -1.8720 0.7823 12 8 7.2024 -2.9475 0.2219 13 7 8.0609 -0.9323 0.5903 14 6 9.1366 -1.1633 -0.3770 15 6 10.1306 -0.0015 -0.3215 16 6 9.5376 1.3708 -0.5119 17 1 9.6218 2.1091 0.2718 18 6 8.8925 1.6857 -1.6892 19 7 8.2280 2.8159 -1.7929 20 14 8.9623 0.5071 -3.1367 21 1 7.7778 -0.3880 -3.1039 22 1 8.9638 1.2800 -4.4047 23 1 10.2010 -0.3077 -3.0523 24 6 11.3175 -0.1315 0.6352 25 6 11.5358 -0.2468 -0.8748 26 6 5.6164 -3.5246 3.0609 27 6 4.6058 -4.6300 3.3736 28 6 6.9583 -4.1536 2.6812 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 3.0662 -2.8324 2.5824 37 1 3.9053 -1.3493 3.0969 38 1 5.9580 -0.7372 1.9825 39 1 8.0300 -0.1030 1.0925 40 1 8.7149 -1.2331 -1.3796 41 1 9.6506 -2.0931 -0.1335 42 1 7.7745 3.0376 -2.6212 43 1 11.6693 0.7754 1.1268 44 1 11.3901 -1.0448 1.2257 45 1 11.7523 -1.2361 -1.2779 46 1 12.0311 0.5842 -1.3769 47 1 5.7466 -2.8923 3.9392 48 1 4.4756 -5.2623 2.4953 49 1 4.9722 -5.2328 4.2045 50 1 3.6496 -4.1823 3.6440 51 1 7.6785 -3.3663 2.4581 52 1 7.3252 -4.7563 3.5120 53 1 6.8278 -4.7860 1.8030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594240121.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:31 Heat of formation + Delta-G solvation = -130.964984 kcal Electronic energy + Delta-G solvation = -31710.303744 eV Core-core repulsion = 27581.662418 eV Total energy + Delta-G solvation = -4128.641327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.85804 -41.00674 -39.08469 -38.20879 -37.40352 -34.95396 -34.30977 -34.21817 -33.97808 -31.66528 -28.54093 -28.25357 -27.77618 -27.08288 -25.56227 -23.22332 -22.93871 -21.87006 -21.51571 -21.12540 -21.01766 -19.26680 -18.80372 -18.35389 -17.62607 -17.40157 -17.08549 -16.96636 -16.40123 -15.91991 -15.50568 -15.39908 -15.14700 -15.07289 -14.89097 -14.72338 -14.53707 -14.12054 -14.04812 -13.78892 -13.53810 -13.49662 -13.20604 -13.20468 -13.05118 -12.94753 -12.76353 -12.70565 -12.47300 -12.27232 -12.16738 -12.10245 -11.95988 -11.74666 -11.64000 -11.58361 -11.46060 -11.41245 -11.20470 -11.00479 -10.70143 -10.37236 -10.10048 -9.56873 -8.35901 -6.35823 1.21537 1.26112 1.33899 1.41771 1.64351 1.84927 2.30583 2.33346 2.92601 3.28567 3.49560 3.52843 3.62128 3.76856 3.89983 4.03573 4.04053 4.09356 4.13805 4.24061 4.31102 4.40195 4.46336 4.50573 4.55834 4.61211 4.70087 4.71965 4.80439 4.81667 4.86469 4.87900 4.91565 4.91750 5.05203 5.06591 5.08571 5.12841 5.17877 5.24340 5.25410 5.45419 5.49788 5.51686 5.54438 5.64581 5.69328 5.74552 6.13640 6.28261 6.69596 6.77235 7.23258 7.31886 7.74192 8.77940 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.004187 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.536493 B = 6685.308711 C = 9048.608580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 C -0.168 4.168 4 O -0.351 6.351 5 C 0.449 3.551 6 O -0.537 6.537 7 C -0.114 4.114 8 C 0.177 3.823 9 H 0.059 0.941 10 N -0.729 5.729 11 C 0.705 3.295 12 O -0.634 6.634 13 N -0.723 5.723 14 C 0.184 3.816 15 C -0.043 4.043 16 C -0.472 4.472 17 H 0.050 0.950 18 C 0.044 3.956 19 N -0.933 5.933 20 Si 0.910 3.090 21 H -0.302 1.302 22 H -0.295 1.295 23 H -0.225 1.225 24 C -0.152 4.152 25 C -0.184 4.184 26 C -0.096 4.096 27 C -0.146 4.146 28 C -0.133 4.133 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.158 0.842 37 H 0.144 0.856 38 H 0.401 0.599 39 H 0.405 0.595 40 H 0.018 0.982 41 H 0.058 0.942 42 H 0.263 0.737 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.045 0.955 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.029 0.971 52 H 0.063 0.937 53 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.451 -10.016 13.647 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.018 3.982 3 C -0.225 4.225 4 O -0.269 6.269 5 C 0.293 3.707 6 O -0.426 6.426 7 C -0.151 4.151 8 C 0.072 3.928 9 H 0.077 0.923 10 N -0.383 5.383 11 C 0.405 3.595 12 O -0.517 6.517 13 N -0.377 5.377 14 C 0.059 3.941 15 C -0.044 4.044 16 C -0.509 4.509 17 H 0.068 0.932 18 C -0.155 4.155 19 N -0.572 5.572 20 Si 0.738 3.262 21 H -0.230 1.230 22 H -0.222 1.222 23 H -0.147 1.147 24 C -0.189 4.189 25 C -0.222 4.222 26 C -0.116 4.116 27 C -0.203 4.203 28 C -0.191 4.191 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.175 0.825 37 H 0.162 0.838 38 H 0.236 0.764 39 H 0.241 0.759 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.102 0.898 47 H 0.114 0.886 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.103 0.897 51 H 0.048 0.952 52 H 0.082 0.918 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.300 -10.838 12.671 21.966 hybrid contribution 0.125 0.852 -1.433 1.672 sum -14.175 -9.986 11.238 20.663 Atomic orbital electron populations 1.21867 0.89521 1.03767 1.04464 1.22886 0.96939 0.92335 0.86053 1.22197 1.00371 0.95528 1.04425 1.86536 1.36311 1.62613 1.41416 1.24454 0.79046 0.76422 0.90761 1.90803 1.59846 1.59175 1.32738 1.21983 0.96334 1.02394 0.94402 1.20766 0.85635 0.88199 0.98206 0.92265 1.44927 1.26087 1.15375 1.51936 1.15991 0.80362 0.83580 0.79533 1.90815 1.79745 1.25958 1.55149 1.44934 1.27306 1.20566 1.44866 1.20594 0.87197 0.96573 0.89747 1.19465 0.87115 0.93406 1.04426 1.20321 1.34150 0.95478 1.00959 0.93215 1.25403 0.93951 0.95696 1.00457 1.69999 1.33959 1.25739 1.27472 0.86351 0.79981 0.79924 0.79968 1.22992 1.22196 1.14747 1.22832 1.02036 1.02220 0.91807 1.23070 1.00773 1.01548 0.96848 1.21509 0.95652 0.97320 0.97093 1.21913 0.98956 0.97622 1.01834 1.21734 0.97071 0.99944 1.00307 0.90132 0.89003 0.91284 0.92363 0.95112 0.89540 0.89865 0.82462 0.83777 0.76400 0.75931 0.96390 0.92364 0.92831 0.89428 0.88361 0.89191 0.89812 0.88597 0.93540 0.91036 0.89672 0.95151 0.91774 0.94627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.57 71.98 0.69 -1.33 16 2 C 0.07 1.65 3.18 30.59 0.10 1.75 16 3 C -0.17 -3.90 9.55 71.98 0.69 -3.21 16 4 O -0.35 -8.10 9.88 -51.43 -0.51 -8.61 16 5 C 0.45 11.78 7.79 71.24 0.56 12.33 16 6 O -0.54 -20.15 14.57 21.96 0.32 -19.83 16 7 C -0.11 -1.90 5.14 29.85 0.15 -1.75 16 8 C 0.18 4.37 1.40 44.99 0.06 4.43 16 9 H 0.06 1.95 7.32 -2.39 -0.02 1.94 16 10 N -0.73 -22.48 4.11 -457.80 -1.88 -24.36 16 11 C 0.71 28.72 6.71 179.06 1.20 29.93 16 12 O -0.63 -29.90 13.88 -4.01 -0.06 -29.96 16 13 N -0.72 -30.39 5.42 -478.56 -2.59 -32.98 16 14 C 0.18 8.28 5.15 86.38 0.45 8.73 16 15 C -0.04 -1.91 1.00 -52.93 -0.05 -1.96 16 16 C -0.47 -25.27 8.65 25.60 0.22 -25.05 16 17 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 18 C 0.04 2.54 5.45 84.66 0.46 3.01 16 19 N -0.93 -57.10 13.96 21.45 0.30 -56.80 16 20 Si 0.91 46.82 24.88 68.60 1.71 48.53 16 21 H -0.30 -16.74 6.99 99.48 0.70 -16.05 16 22 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 23 H -0.23 -10.49 5.91 99.48 0.59 -9.90 16 24 C -0.15 -5.60 9.92 30.60 0.30 -5.30 16 25 C -0.18 -7.28 8.36 30.59 0.26 -7.02 16 26 C -0.10 -1.83 2.69 -10.79 -0.03 -1.86 16 27 C -0.15 -1.92 8.85 71.98 0.64 -1.28 16 28 C -0.13 -3.50 7.78 71.98 0.56 -2.94 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.63 7.16 -2.39 -0.02 1.61 16 33 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.16 1.51 6.17 -2.39 -0.01 1.49 16 37 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.40 10.78 8.63 -92.71 -0.80 9.98 16 39 H 0.41 16.39 7.98 -92.71 -0.74 15.65 16 40 H 0.02 0.92 4.81 -2.39 -0.01 0.91 16 41 H 0.06 2.48 8.06 -2.39 -0.02 2.46 16 42 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 47 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 48 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.08 0.65 6.32 -2.39 -0.02 0.63 16 51 H 0.03 0.96 5.86 -2.38 -0.01 0.94 16 52 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.03 1.11 7.63 -2.39 -0.02 1.09 16 Total: -1.00 -78.54 416.37 2.78 -75.77 By element: Atomic # 1 Polarization: 40.53 SS G_CDS: -0.76 Total: 39.77 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 6.25 Total: 8.47 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -4.18 Total: -114.15 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: -0.24 Total: -58.40 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.71 Total: 48.53 kcal Total: -78.54 2.78 -75.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594240121.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.198 kcal (2) G-P(sol) polarization free energy of solvation -78.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds