Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47100 * 2 1 4 4 C 1.52991 * 109.47219 * 120.00292 * 2 1 3 5 5 N 1.46494 * 109.47096 * 300.00115 * 4 2 1 6 6 C 1.34779 * 119.99845 * 180.02562 * 5 4 2 7 7 O 1.21584 * 120.00248 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00122 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00381 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47444 * 186.15151 * 9 8 6 11 11 C 1.50696 * 115.54922 * 40.07224 * 10 9 8 12 12 H 1.08000 * 120.00631 * 264.81645 * 11 10 9 13 13 C 1.37877 * 119.99965 * 84.81796 * 11 10 9 14 14 N 1.31515 * 120.00025 * 351.91103 * 13 11 10 15 15 Si 1.86800 * 120.00234 * 171.91249 * 13 11 10 16 16 H 1.48499 * 109.46849 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47285 * 119.99907 * 15 13 11 18 18 H 1.48494 * 109.47260 * 239.99974 * 15 13 11 19 19 C 1.52997 * 117.49696 * 254.36646 * 10 9 8 20 20 C 1.52995 * 59.99991 * 252.50902 * 19 10 9 21 21 C 1.53009 * 109.46887 * 240.00481 * 2 1 3 22 22 O 1.42901 * 109.51770 * 180.12466 * 21 2 1 23 23 C 1.53177 * 109.52041 * 59.99992 * 21 2 1 24 24 C 1.53178 * 109.03289 * 183.11351 * 23 21 2 25 25 C 1.53093 * 109.16428 * 56.97512 * 24 23 21 26 26 O 1.42900 * 109.41825 * 302.39055 * 25 24 23 27 27 C 1.42906 * 114.09312 * 61.15930 * 26 25 24 28 28 H 1.08996 * 109.47198 * 299.99757 * 1 2 3 29 29 H 1.08999 * 109.47091 * 59.99500 * 1 2 3 30 30 H 1.09002 * 109.46757 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47039 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47131 * 300.00534 * 3 2 1 33 33 H 1.09006 * 109.46859 * 60.00144 * 3 2 1 34 34 H 1.09005 * 109.46971 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47123 * 60.00386 * 4 2 1 36 36 H 0.96993 * 120.00580 * 359.97438 * 5 4 2 37 37 H 0.96999 * 119.99545 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.47186 * 66.14730 * 9 8 6 39 39 H 1.09000 * 109.46859 * 306.15424 * 9 8 6 40 40 H 0.97004 * 120.00232 * 185.02008 * 14 13 11 41 41 H 1.09005 * 117.50045 * 0.02562 * 19 10 9 42 42 H 1.09004 * 117.49621 * 145.01682 * 19 10 9 43 43 H 1.09004 * 117.49799 * 252.51278 * 20 19 10 44 44 H 1.09001 * 117.49748 * 107.49246 * 20 19 10 45 45 H 0.96704 * 113.99683 * 179.97438 * 22 21 2 46 46 H 1.08997 * 109.54486 * 302.97656 * 23 21 2 47 47 H 1.08998 * 109.54497 * 63.15983 * 23 21 2 48 48 H 1.09002 * 109.52305 * 176.88528 * 24 23 21 49 49 H 1.09005 * 109.52422 * 297.07336 * 24 23 21 50 50 H 1.09002 * 109.47561 * 62.37983 * 25 24 23 51 51 H 1.09001 * 109.48292 * 182.39566 * 25 24 23 52 52 H 1.09003 * 109.47874 * 178.85932 * 27 26 25 53 53 H 1.09003 * 109.48152 * 58.82394 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.5517 -0.0308 2.4453 6 6 1.8777 -0.4910 3.6694 7 8 2.5768 -1.4795 3.7809 8 7 1.4289 0.1445 4.7699 9 6 1.7828 -0.3560 6.1005 10 6 1.0283 0.4444 7.1639 11 6 -0.4019 0.7822 6.8300 12 1 -0.6418 1.7370 6.3859 13 6 -1.4042 -0.1277 7.0913 14 7 -1.1007 -1.3463 7.4819 15 14 -3.1934 0.3703 6.8907 16 1 -3.2664 1.7845 6.4437 17 1 -3.8396 -0.5025 5.8778 18 1 -3.8965 0.2246 8.1905 19 6 1.8252 1.4674 7.9757 20 6 1.3640 0.1635 8.6299 21 6 2.0400 -0.7212 -1.2494 22 8 3.4690 -0.7243 -1.2490 23 6 1.5300 0.0001 -2.5008 24 6 1.9814 -0.7745 -3.7427 25 6 1.4677 -2.2138 -3.6516 26 8 1.9534 -2.8165 -2.4504 27 6 1.5239 -2.1625 -1.2546 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9564 0.8901 34 1 3.1300 -0.7208 1.2493 35 1 1.6767 -1.7490 1.2490 36 1 0.9943 0.7581 2.3564 37 1 0.8715 0.9334 4.6810 38 1 2.8560 -0.2461 6.2564 39 1 1.5106 -1.4087 6.1768 40 1 -1.8011 -2.0078 7.5956 41 1 2.8871 1.5706 7.7519 42 1 1.3152 2.3852 8.2683 43 1 0.5505 0.2235 9.3529 44 1 2.1225 -0.5915 8.8368 45 1 3.8615 -1.1667 -2.0141 46 1 0.4413 0.0473 -2.4762 47 1 1.9382 1.0103 -2.5312 48 1 1.5762 -0.2989 -4.6359 49 1 3.0703 -0.7790 -3.7934 50 1 0.3777 -2.2107 -3.6418 51 1 1.8218 -2.7814 -4.5122 52 1 1.9188 -2.6931 -0.3882 53 1 0.4347 -2.1587 -1.2134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596587577.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = -134.014490 kcal Electronic energy + Delta-G solvation = -31517.772451 eV Core-core repulsion = 27388.998888 eV Total energy + Delta-G solvation = -4128.773563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.80300 -40.75418 -38.70526 -38.16058 -36.46535 -34.90286 -34.33030 -33.97444 -33.44913 -30.43179 -28.63332 -28.19406 -27.56192 -26.69943 -25.38530 -24.61527 -22.93162 -21.87443 -21.52558 -21.22087 -19.75478 -19.12553 -18.42490 -18.07542 -17.47611 -16.93598 -16.61147 -16.59259 -16.44976 -16.04374 -15.97462 -15.59586 -15.22422 -15.10877 -14.81818 -14.62299 -14.48020 -14.30115 -14.04689 -13.81913 -13.63777 -13.46296 -13.16776 -13.04033 -12.92247 -12.87065 -12.79699 -12.49286 -12.30158 -12.21897 -12.00572 -11.94701 -11.82840 -11.64821 -11.51679 -11.35443 -11.22518 -10.96551 -10.80152 -10.44956 -10.27015 -10.14162 -9.99394 -9.47003 -8.07440 -6.20812 1.42035 1.46594 1.55591 1.90058 2.30931 2.43770 2.84111 3.14095 3.20132 3.39506 3.48261 3.59566 3.70861 3.77322 3.95103 3.96717 4.06112 4.11840 4.26002 4.29615 4.44315 4.51549 4.55618 4.65183 4.70334 4.70492 4.73456 4.75755 4.78566 4.82841 4.90238 4.97149 4.98962 5.01492 5.02772 5.07953 5.09070 5.17516 5.26515 5.28509 5.37654 5.48077 5.52358 5.57998 5.64138 5.77980 5.82178 6.17201 6.20832 6.39974 6.79164 6.86842 7.30421 7.48842 7.75204 9.00170 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002615 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.148319 B =10705.051417 C =11367.638038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.049 4.049 3 C -0.136 4.136 4 C 0.156 3.844 5 N -0.730 5.730 6 C 0.693 3.307 7 O -0.650 6.650 8 N -0.708 5.708 9 C 0.198 3.802 10 C 0.005 3.995 11 C -0.502 4.502 12 H 0.068 0.932 13 C 0.028 3.972 14 N -0.905 5.905 15 Si 0.949 3.051 16 H -0.257 1.257 17 H -0.288 1.288 18 H -0.289 1.289 19 C -0.179 4.179 20 C -0.164 4.164 21 C 0.122 3.878 22 O -0.562 6.562 23 C -0.147 4.147 24 C -0.155 4.155 25 C 0.046 3.954 26 O -0.399 6.399 27 C 0.028 3.972 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.407 0.593 37 H 0.407 0.593 38 H 0.035 0.965 39 H 0.023 0.977 40 H 0.257 0.743 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.384 0.616 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.073 0.927 50 H 0.059 0.941 51 H 0.108 0.892 52 H 0.082 0.918 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 6.029 -25.005 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.050 4.050 3 C -0.193 4.193 4 C 0.032 3.968 5 N -0.388 5.388 6 C 0.392 3.608 7 O -0.534 6.534 8 N -0.362 5.362 9 C 0.072 3.928 10 C 0.005 3.995 11 C -0.539 4.539 12 H 0.086 0.914 13 C -0.173 4.173 14 N -0.542 5.542 15 Si 0.776 3.224 16 H -0.181 1.181 17 H -0.214 1.214 18 H -0.215 1.215 19 C -0.216 4.216 20 C -0.202 4.202 21 C 0.080 3.920 22 O -0.370 6.370 23 C -0.185 4.185 24 C -0.192 4.192 25 C -0.030 4.030 26 O -0.318 6.318 27 C -0.049 4.049 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.244 0.756 37 H 0.243 0.757 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.234 0.766 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.116 0.884 49 H 0.091 0.909 50 H 0.077 0.923 51 H 0.126 0.874 52 H 0.100 0.900 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.890 5.157 -24.225 24.936 hybrid contribution -1.388 -0.011 -0.004 1.388 sum 1.502 5.146 -24.229 24.815 Atomic orbital electron populations 1.22114 0.92081 1.02899 1.03814 1.20646 0.96600 0.96567 0.91193 1.21831 1.01299 0.93399 1.02754 1.21137 0.98242 0.94830 0.82605 1.44937 1.56851 1.33699 1.03282 1.16243 0.80357 0.82571 0.81588 1.90824 1.45745 1.29899 1.86902 1.44865 1.54828 1.32416 1.04073 1.20370 0.94936 0.96372 0.81093 1.19120 0.94093 0.97343 0.88974 1.20591 0.89597 1.01908 1.41827 0.91440 1.25700 1.02475 0.94848 0.94268 1.70137 1.33722 1.03665 1.46725 0.85645 0.80714 0.78910 0.77164 1.18082 1.21426 1.21549 1.23082 0.98885 0.93291 1.06330 1.22437 1.01250 0.98415 0.98087 1.21605 0.81596 0.93852 0.94924 1.86532 1.18753 1.81114 1.50609 1.22376 1.02683 1.00361 0.93034 1.22222 1.02265 0.95678 0.99044 1.22893 0.98941 0.94119 0.87052 1.87967 1.74629 1.54706 1.14480 1.23479 1.00069 0.93605 0.87765 0.91685 0.89300 0.92318 0.92997 0.90162 0.92260 0.93204 0.93649 0.75599 0.75672 0.94709 0.95816 0.93402 0.89374 0.89491 0.91767 0.91276 0.76637 0.89256 0.89577 0.88386 0.90883 0.92297 0.87431 0.90018 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 7.60 71.98 0.55 -1.82 16 2 C -0.05 -0.92 0.16 -52.18 -0.01 -0.93 16 3 C -0.14 -2.30 7.81 71.98 0.56 -1.74 16 4 C 0.16 4.40 4.07 86.38 0.35 4.75 16 5 N -0.73 -22.39 4.96 -478.55 -2.37 -24.76 16 6 C 0.69 28.88 8.57 179.05 1.53 30.42 16 7 O -0.65 -33.00 16.33 -3.98 -0.06 -33.07 16 8 N -0.71 -29.55 5.28 -478.54 -2.53 -32.08 16 9 C 0.20 9.39 5.76 86.38 0.50 9.88 16 10 C 0.01 0.26 1.69 -52.93 -0.09 0.17 16 11 C -0.50 -24.96 7.52 25.60 0.19 -24.77 16 12 H 0.07 3.20 7.83 -2.91 -0.02 3.17 16 13 C 0.03 1.47 5.38 84.65 0.46 1.93 16 14 N -0.91 -51.19 12.99 21.45 0.28 -50.91 16 15 Si 0.95 41.20 29.55 68.60 2.03 43.23 16 16 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 17 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 19 C -0.18 -7.20 9.88 30.59 0.30 -6.90 16 20 C -0.16 -7.54 9.53 30.59 0.29 -7.25 16 21 C 0.12 2.05 0.25 -10.70 0.00 2.04 16 22 O -0.56 -11.27 11.63 -141.93 -1.65 -12.92 16 23 C -0.15 -1.60 4.31 30.71 0.13 -1.47 16 24 C -0.15 -1.34 5.82 30.68 0.18 -1.17 16 25 C 0.05 0.52 6.84 72.01 0.49 1.02 16 26 O -0.40 -7.54 10.34 -141.93 -1.47 -9.01 16 27 C 0.03 0.53 5.09 72.01 0.37 0.90 16 28 H 0.06 1.07 6.86 -2.39 -0.02 1.06 16 29 H 0.09 0.94 6.37 -2.39 -0.02 0.92 16 30 H 0.06 0.98 6.37 -2.39 -0.02 0.96 16 31 H 0.05 1.06 7.69 -2.39 -0.02 1.05 16 32 H 0.08 1.00 6.51 -2.39 -0.02 0.98 16 33 H 0.06 0.99 6.86 -2.38 -0.02 0.97 16 34 H 0.05 1.65 7.68 -2.38 -0.02 1.63 16 35 H 0.05 1.42 6.50 -2.39 -0.02 1.41 16 36 H 0.41 9.99 6.18 -92.71 -0.57 9.42 16 37 H 0.41 15.33 7.61 -92.71 -0.71 14.63 16 38 H 0.03 1.60 7.95 -2.39 -0.02 1.58 16 39 H 0.02 1.32 8.12 -2.39 -0.02 1.30 16 40 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 41 H 0.09 3.17 8.09 -2.38 -0.02 3.15 16 42 H 0.09 3.34 8.14 -2.39 -0.02 3.33 16 43 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 45 H 0.38 6.01 7.08 -74.05 -0.52 5.48 16 46 H 0.09 0.79 6.29 -2.39 -0.02 0.77 16 47 H 0.09 0.89 6.62 -2.39 -0.02 0.88 16 48 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.07 0.65 6.95 -2.38 -0.02 0.64 16 50 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.08 1.97 6.58 -2.39 -0.02 1.95 16 53 H 0.07 1.24 6.30 -2.39 -0.02 1.22 16 Total: -1.00 -69.21 400.25 -0.83 -70.05 By element: Atomic # 1 Polarization: 45.25 SS G_CDS: -0.86 Total: 44.39 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.80 Total: 5.07 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -4.62 Total: -107.75 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -3.18 Total: -54.99 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -69.21 -0.83 -70.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596587577.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.966 kcal (2) G-P(sol) polarization free energy of solvation -69.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds