Wall clock time and date at job start Sat Apr 11 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 114.00560 * 2 1 4 4 H 1.09004 * 109.46361 * 34.47264 * 3 2 1 5 5 C 1.52990 * 109.47527 * 154.47319 * 3 2 1 6 6 N 1.46504 * 109.47368 * 294.23253 * 5 3 2 7 7 C 1.34776 * 119.99848 * 179.97438 * 6 5 3 8 8 O 1.21347 * 120.00462 * 0.02562 * 7 6 5 9 9 C 1.49446 * 119.99658 * 179.97438 * 7 6 5 10 10 O 1.21355 * 120.00385 * 359.97438 * 9 7 6 11 11 N 1.34781 * 120.00167 * 180.02562 * 9 7 6 12 12 C 1.46496 * 120.00129 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47092 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47267 * 299.99918 * 13 12 11 15 15 C 1.53004 * 109.47146 * 59.99870 * 13 12 11 16 16 C 1.50699 * 109.47196 * 179.97438 * 13 12 11 17 17 H 1.07997 * 120.00257 * 0.02562 * 16 13 12 18 18 C 1.37883 * 119.99906 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99701 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 119.99807 * 179.97438 * 18 16 13 21 21 H 1.48493 * 109.47231 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47077 * 119.99917 * 20 18 16 23 23 H 1.48495 * 109.47181 * 240.00023 * 20 18 16 24 24 C 1.53003 * 109.47093 * 274.48067 * 3 2 1 25 25 C 1.54270 * 110.02872 * 297.83206 * 24 3 2 26 26 C 1.54892 * 104.19426 * 217.10885 * 25 24 3 27 27 C 1.54893 * 102.74937 * 37.93849 * 26 25 24 28 28 C 1.53866 * 110.03389 * 180.66787 * 24 3 2 29 29 H 1.09001 * 109.47184 * 55.05515 * 1 2 3 30 30 H 1.08992 * 109.47472 * 175.06339 * 1 2 3 31 31 H 1.09004 * 109.46685 * 295.06285 * 1 2 3 32 32 H 1.08998 * 109.47699 * 174.22752 * 5 3 2 33 33 H 1.09003 * 109.47210 * 54.23149 * 5 3 2 34 34 H 0.96993 * 119.99919 * 359.97438 * 6 5 3 35 35 H 0.97002 * 119.99681 * 359.97438 * 11 9 7 36 36 H 1.08994 * 109.47320 * 299.99358 * 12 11 9 37 37 H 1.08997 * 109.47439 * 59.99784 * 12 11 9 38 38 H 1.09007 * 109.46857 * 59.99696 * 14 13 12 39 39 H 1.09002 * 109.47247 * 179.97438 * 14 13 12 40 40 H 1.08997 * 109.47091 * 300.00292 * 14 13 12 41 41 H 1.09003 * 109.46897 * 59.99795 * 15 13 12 42 42 H 1.09000 * 109.47072 * 180.02562 * 15 13 12 43 43 H 1.09007 * 109.47033 * 300.00337 * 15 13 12 44 44 H 0.97005 * 119.99154 * 179.97438 * 19 18 16 45 45 H 1.08998 * 110.01676 * 59.26818 * 24 3 2 46 46 H 1.09003 * 110.48562 * 335.78564 * 25 24 3 47 47 H 1.09001 * 110.48695 * 98.42736 * 25 24 3 48 48 H 1.09002 * 110.75361 * 279.62618 * 26 25 24 49 49 H 1.08996 * 110.91066 * 156.32953 * 26 25 24 50 50 H 1.08994 * 110.48577 * 203.37607 * 27 26 25 51 51 H 1.09005 * 110.59221 * 80.79379 * 27 26 25 52 52 H 1.09000 * 110.03247 * 238.56755 * 28 24 3 53 53 H 1.09004 * 110.03001 * 359.97438 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3841 1.9819 0.5817 5 6 3.4068 1.2419 0.6216 6 7 3.2952 0.8848 2.0380 7 6 4.4054 0.7692 2.7933 8 8 5.4974 0.9613 2.3004 9 6 4.2914 0.4055 4.2384 10 8 3.1993 0.2146 4.7318 11 7 5.4016 0.2903 4.9940 12 6 5.2899 -0.0668 6.4103 13 6 6.6866 -0.1309 7.0318 14 6 7.5207 -1.1870 6.3038 15 6 7.3658 1.2339 6.9019 16 6 6.5717 -0.4977 8.4889 17 1 5.5998 -0.6683 8.9278 18 6 7.7074 -0.6153 9.2619 19 7 8.8909 -0.4080 8.7273 20 14 7.5649 -1.0692 11.0682 21 1 6.1339 -1.2473 11.4225 22 1 8.2989 -2.3353 11.3199 23 1 8.1486 0.0148 11.8985 24 6 2.1149 1.8172 -1.4381 25 6 3.0426 0.8984 -2.2597 26 6 3.8071 1.8685 -3.1944 27 6 4.0494 3.0991 -2.2855 28 6 2.7550 3.2163 -1.4545 29 1 -0.3633 0.5886 -0.8424 30 1 -0.3634 -1.0238 -0.0884 31 1 -0.3633 0.4354 0.9310 32 1 3.8904 2.2143 0.5291 33 1 4.0014 0.4898 0.1030 34 1 2.4223 0.7315 2.4322 35 1 6.2746 0.4432 4.5997 36 1 4.6954 0.6854 6.9289 37 1 4.8064 -1.0392 6.5029 38 1 7.6037 -0.9213 5.2499 39 1 8.5158 -1.2324 6.7463 40 1 7.0368 -2.1593 6.3963 41 1 6.7715 1.9863 7.4205 42 1 8.3610 1.1880 7.3442 43 1 7.4488 1.4996 5.8480 44 1 9.6899 -0.4904 9.2712 45 1 1.1254 1.8538 -1.8939 46 1 3.7374 0.3733 -1.6043 47 1 2.4568 0.1884 -2.8436 48 1 3.1951 2.1385 -4.0550 49 1 4.7534 1.4337 -3.5163 50 1 4.1984 3.9950 -2.8881 51 1 4.9072 2.9316 -1.6340 52 1 2.0766 3.9319 -1.9191 53 1 2.9908 3.5309 -0.4379 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597341678.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:52 Heat of formation + Delta-G solvation = -154.671461 kcal Electronic energy + Delta-G solvation = -30477.653486 eV Core-core repulsion = 26347.984170 eV Total energy + Delta-G solvation = -4129.669316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77809 -40.59441 -39.54989 -38.19421 -37.81988 -36.04375 -34.93507 -32.74514 -31.96117 -29.59641 -28.81130 -27.81884 -27.58716 -27.33088 -26.87733 -24.67088 -23.58456 -21.63516 -21.42510 -20.74018 -20.38872 -19.44249 -18.15845 -17.93096 -17.68488 -17.24383 -16.92917 -16.66561 -16.52444 -16.15670 -15.91020 -15.66607 -15.41710 -15.15662 -14.87774 -14.76125 -14.64065 -14.29276 -14.05613 -13.94436 -13.47244 -13.21511 -13.13978 -12.89068 -12.79687 -12.71071 -12.57209 -12.55797 -12.28073 -12.12289 -12.10932 -11.92969 -11.86807 -11.80459 -11.50878 -11.41433 -11.30452 -11.26283 -10.79778 -10.67674 -10.43086 -10.41449 -10.31661 -10.12013 -8.01420 -6.17724 0.34223 1.33631 1.43334 1.47712 1.56963 2.14179 2.45464 2.67502 2.73078 3.22492 3.44329 3.57204 3.70414 3.73664 3.97117 4.07553 4.28087 4.34550 4.43279 4.47250 4.49628 4.56101 4.61335 4.65845 4.67823 4.69047 4.76835 4.85607 4.91398 4.92487 4.95760 5.03962 5.05947 5.06727 5.10034 5.12557 5.17205 5.21679 5.28612 5.36482 5.44784 5.48024 5.53115 5.64775 5.68014 5.92083 6.11125 6.18966 6.21341 6.37590 6.41480 6.72252 6.86607 6.95946 7.50187 8.98082 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023021 B = 0.002027 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.995281 B =13809.043288 C =14533.844478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.088 3.912 4 H 0.083 0.917 5 C 0.117 3.883 6 N -0.684 5.684 7 C 0.513 3.487 8 O -0.541 6.541 9 C 0.498 3.502 10 O -0.551 6.551 11 N -0.681 5.681 12 C 0.143 3.857 13 C 0.050 3.950 14 C -0.124 4.124 15 C -0.124 4.124 16 C -0.524 4.524 17 H 0.051 0.949 18 C 0.025 3.975 19 N -0.901 5.901 20 Si 0.949 3.051 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.105 4.105 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.129 4.129 28 C -0.123 4.123 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.418 0.582 35 H 0.413 0.587 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.029 0.971 39 H 0.064 0.936 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.063 0.937 43 H 0.029 0.971 44 H 0.260 0.740 45 H 0.091 0.909 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.063 0.937 50 H 0.073 0.927 51 H 0.057 0.943 52 H 0.079 0.921 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.180 6.486 -24.235 29.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.029 3.971 4 H 0.101 0.899 5 C -0.006 4.006 6 N -0.337 5.337 7 C 0.293 3.707 8 O -0.419 6.419 9 C 0.278 3.722 10 O -0.430 6.430 11 N -0.333 5.333 12 C 0.020 3.980 13 C 0.049 3.951 14 C -0.182 4.182 15 C -0.182 4.182 16 C -0.562 4.562 17 H 0.070 0.930 18 C -0.175 4.175 19 N -0.540 5.540 20 Si 0.776 3.224 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.124 4.124 25 C -0.156 4.156 26 C -0.162 4.162 27 C -0.166 4.166 28 C -0.160 4.160 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.255 0.745 35 H 0.251 0.749 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.109 0.891 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.076 0.924 52 H 0.098 0.902 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.876 6.321 -24.181 29.086 hybrid contribution 0.036 -0.240 1.244 1.268 sum -14.841 6.082 -22.937 27.988 Atomic orbital electron populations 1.22963 0.79585 1.03705 1.00992 1.87964 1.21265 1.27389 1.95167 1.22413 0.92728 0.85497 0.96418 0.89910 1.21878 0.97840 1.02347 0.78508 1.45647 1.09169 1.67935 1.10933 1.19994 0.85127 0.78582 0.86998 1.90750 1.27269 1.49895 1.73943 1.20323 0.84962 0.79162 0.87722 1.90710 1.27083 1.50897 1.74322 1.46067 1.09386 1.66381 1.11432 1.21556 0.99652 0.98978 0.77809 1.18393 0.89279 0.93436 0.94001 1.21712 1.02396 0.97529 0.96577 1.21708 1.02369 0.96572 0.97521 1.21262 0.92826 1.47482 0.94659 0.93029 1.25512 0.95174 0.95108 1.01682 1.69937 0.97797 1.49738 1.36520 0.85643 0.78017 0.77608 0.81145 1.19630 1.20935 1.20889 1.22197 1.00846 0.95395 0.93942 1.22410 0.97956 0.97496 0.97755 1.22511 1.00177 0.95569 0.97944 1.22392 0.97441 0.98626 0.98181 1.22260 0.97165 0.95771 1.00836 0.92493 0.89056 0.93322 0.88643 0.90724 0.74504 0.74904 0.92618 0.92784 0.95199 0.91756 0.95778 0.95682 0.91777 0.95161 0.93066 0.89091 0.92263 0.91547 0.90746 0.91776 0.90827 0.92393 0.90215 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.80 113.37 1.22 1.48 16 2 O -0.40 -6.62 10.04 -148.98 -1.50 -8.12 16 3 C 0.09 1.22 1.83 30.59 0.06 1.27 16 4 H 0.08 0.94 7.89 -2.38 -0.02 0.92 16 5 C 0.12 2.21 4.75 86.38 0.41 2.62 16 6 N -0.68 -16.08 5.51 -464.42 -2.56 -18.64 16 7 C 0.51 15.64 7.89 87.27 0.69 16.33 16 8 O -0.54 -18.48 16.48 -3.24 -0.05 -18.53 16 9 C 0.50 17.43 7.89 87.27 0.69 18.12 16 10 O -0.55 -21.00 16.48 -3.26 -0.05 -21.05 16 11 N -0.68 -25.21 4.95 -464.42 -2.30 -27.51 16 12 C 0.14 6.00 4.50 86.38 0.39 6.39 16 13 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 14 C -0.12 -5.73 8.08 71.98 0.58 -5.14 16 15 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 16 C -0.52 -27.37 8.01 25.60 0.21 -27.17 16 17 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 18 C 0.02 1.31 5.15 84.66 0.44 1.74 16 19 N -0.90 -48.53 9.35 21.45 0.20 -48.33 16 20 Si 0.95 42.43 29.54 68.60 2.03 44.46 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 C -0.10 -1.17 2.90 -10.07 -0.03 -1.20 16 25 C -0.12 -1.57 5.91 31.67 0.19 -1.39 16 26 C -0.12 -1.44 6.91 31.89 0.22 -1.22 16 27 C -0.13 -1.49 6.83 31.67 0.22 -1.28 16 28 C -0.12 -1.26 5.84 31.31 0.18 -1.08 16 29 H 0.06 0.44 7.45 -2.39 -0.02 0.42 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.10 1.72 6.28 -2.39 -0.01 1.71 16 33 H 0.07 1.62 6.22 -2.39 -0.01 1.60 16 34 H 0.42 9.10 7.94 -92.71 -0.74 8.36 16 35 H 0.41 14.95 5.63 -92.71 -0.52 14.43 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.03 1.21 6.86 -2.38 -0.02 1.19 16 39 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 40 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 43 H 0.03 1.21 6.86 -2.38 -0.02 1.20 16 44 H 0.26 13.45 8.31 -92.70 -0.77 12.68 16 45 H 0.09 0.83 7.50 -2.39 -0.02 0.81 16 46 H 0.06 0.98 5.70 -2.39 -0.01 0.97 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 52 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.07 0.73 6.31 -2.38 -0.02 0.72 16 Total: -1.00 -60.59 410.07 1.44 -59.15 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.34 Total: 31.89 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 6.01 Total: 6.68 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -4.66 Total: -94.47 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -1.60 Total: -47.70 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -60.59 1.44 -59.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597341678.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.525 kcal (2) G-P(sol) polarization free energy of solvation -60.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds