Wall clock time and date at job start Sat Apr 11 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47229 * 2 1 4 4 C 1.52996 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47217 * 54.99888 * 4 3 2 6 6 C 1.53000 * 109.47310 * 175.00072 * 4 3 2 7 7 N 1.46506 * 109.47193 * 295.00257 * 4 3 2 8 8 C 1.46761 * 124.34998 * 120.00085 * 7 4 3 9 9 C 1.54476 * 105.47099 * 162.98591 * 8 7 4 10 10 H 1.08999 * 110.96971 * 143.53436 * 9 8 7 11 11 C 1.50705 * 111.00050 * 267.28035 * 9 8 7 12 12 O 1.21281 * 119.99581 * 4.02810 * 11 9 8 13 13 N 1.34777 * 120.00214 * 184.03211 * 11 9 8 14 14 C 1.46498 * 119.99728 * 5.35485 * 13 11 9 15 15 C 1.50696 * 109.47419 * 84.50591 * 14 13 11 16 16 H 1.08002 * 120.00025 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99994 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00006 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99856 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47020 * 60.00104 * 19 17 15 21 21 H 1.48501 * 109.47085 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47375 * 300.00365 * 19 17 15 23 23 C 1.46497 * 119.99943 * 185.34934 * 13 11 9 24 24 C 1.53005 * 109.46878 * 90.00481 * 23 13 11 25 25 O 1.42897 * 109.47492 * 64.99395 * 24 23 13 26 26 C 1.42901 * 114.00112 * 180.02562 * 25 24 23 27 27 C 1.54624 * 101.76841 * 25.41020 * 9 8 7 28 28 C 1.34423 * 124.34274 * 299.99831 * 7 4 3 29 29 O 1.21275 * 124.94450 * 0.44157 * 28 7 4 30 30 H 1.09005 * 109.47487 * 59.99760 * 1 2 3 31 31 H 1.09000 * 109.47524 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47136 * 300.00506 * 1 2 3 33 33 H 1.08998 * 109.46942 * 240.00011 * 2 1 3 34 34 H 1.08998 * 109.47160 * 119.99649 * 2 1 3 35 35 H 1.08996 * 109.46739 * 59.99801 * 3 2 1 36 36 H 1.08998 * 109.46763 * 299.99893 * 3 2 1 37 37 H 1.09000 * 109.47066 * 180.02562 * 6 4 3 38 38 H 1.09002 * 109.47155 * 300.00188 * 6 4 3 39 39 H 1.08996 * 109.47214 * 59.99825 * 6 4 3 40 40 H 1.08992 * 110.24951 * 43.98461 * 8 7 4 41 41 H 1.09002 * 110.24209 * 281.97832 * 8 7 4 42 42 H 1.09003 * 109.46901 * 204.50693 * 14 13 11 43 43 H 1.08997 * 109.47109 * 324.49840 * 14 13 11 44 44 H 0.96995 * 119.99641 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.46980 * 209.99570 * 23 13 11 46 46 H 1.08994 * 109.47542 * 330.00592 * 23 13 11 47 47 H 1.08997 * 109.47088 * 185.00173 * 24 23 13 48 48 H 1.08999 * 109.46858 * 304.99664 * 24 23 13 49 49 H 1.08996 * 109.47313 * 60.00057 * 26 25 24 50 50 H 1.08999 * 109.46709 * 180.02562 * 26 25 24 51 51 H 1.09001 * 109.46837 * 300.00042 * 26 25 24 52 52 H 1.09004 * 110.48603 * 93.88532 * 27 9 8 53 53 H 1.08999 * 110.49378 * 216.52297 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0801 2.8795 -0.1251 7 7 4.0578 0.8589 1.2528 8 6 4.9050 -0.3367 1.3343 9 6 5.5111 -0.3161 2.7551 10 1 5.5948 -1.3254 3.1581 11 6 6.8494 0.3768 2.7614 12 8 7.2712 0.8900 1.7467 13 7 7.5775 0.4262 3.8945 14 6 7.1246 -0.2928 5.0879 15 6 7.5826 -1.7266 5.0147 16 1 8.1536 -2.0683 4.1640 17 6 7.2728 -2.6022 6.0337 18 7 6.5780 -2.1860 7.0698 19 14 7.8400 -4.3797 5.9426 20 1 9.3227 -4.4231 5.8706 21 1 7.3821 -5.1080 7.1530 22 1 7.2667 -5.0207 4.7320 23 6 8.8216 1.1986 3.9327 24 6 8.5179 2.6334 4.3687 25 8 8.0334 2.6303 5.7130 26 6 7.7174 3.9285 6.2200 27 6 4.4589 0.5058 3.5349 28 6 3.7869 1.3499 2.4745 29 8 3.1029 2.3268 2.6945 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 5.1701 2.8794 -0.1251 38 1 3.7171 3.3137 -1.0566 39 1 3.7164 3.4691 0.7165 40 1 5.6961 -0.2902 0.5861 41 1 4.3040 -1.2351 1.1937 42 1 7.5447 0.1779 5.9768 43 1 6.0364 -0.2611 5.1400 44 1 6.3597 -2.8021 7.7865 45 1 9.5114 0.7416 4.6423 46 1 9.2739 1.2083 2.9410 47 1 9.4279 3.2307 4.3118 48 1 7.7612 3.0606 3.7108 49 1 6.9439 4.3822 5.6004 50 1 7.3572 3.8404 7.2450 51 1 8.6106 4.5530 6.2015 52 1 3.7351 -0.1554 4.0115 53 1 4.9436 1.1402 4.2770 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136625.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:01 Heat of formation + Delta-G solvation = -145.330735 kcal Electronic energy + Delta-G solvation = -32351.750096 eV Core-core repulsion = 28222.485824 eV Total energy + Delta-G solvation = -4129.264272 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.06412 -40.42359 -38.76173 -37.59768 -36.67065 -36.56722 -34.53763 -33.78780 -31.75913 -30.49570 -28.85069 -28.63615 -27.58210 -27.18088 -25.19851 -24.62895 -23.46381 -22.89428 -22.21449 -19.97323 -19.83344 -18.75884 -18.18967 -17.76257 -17.53963 -17.23973 -16.74044 -16.52103 -16.32599 -16.09329 -15.85052 -15.69542 -15.42334 -14.93754 -14.67094 -14.63685 -14.42838 -14.28372 -13.84685 -13.60402 -13.56673 -13.55320 -13.22824 -13.18082 -12.97530 -12.82209 -12.78670 -12.73505 -12.70688 -12.53056 -12.45347 -12.39314 -12.09825 -11.92225 -11.82009 -11.62610 -11.60676 -11.53609 -10.77927 -10.64810 -10.58150 -10.43601 -9.63212 -9.41989 -8.12086 -6.27061 1.47641 1.49118 1.54733 1.56251 1.70956 2.04920 2.27776 2.48842 2.90318 3.17758 3.34663 3.47247 3.64133 3.79527 3.91273 4.05964 4.12120 4.12893 4.19759 4.33418 4.34376 4.43001 4.44296 4.49369 4.51629 4.58102 4.60762 4.64011 4.67432 4.74029 4.76729 4.81104 4.85144 4.87167 4.91914 4.97376 5.00228 5.03864 5.08661 5.23462 5.28015 5.34767 5.38812 5.46168 5.71062 5.74973 5.90032 6.14898 6.15292 6.24142 6.61950 6.88691 7.18005 7.30690 7.46181 8.92984 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009391 B = 0.004168 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.755479 B = 6716.536327 C = 8432.794966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.152 3.848 5 H 0.112 0.888 6 C -0.161 4.161 7 N -0.599 5.599 8 C 0.124 3.876 9 C -0.116 4.116 10 H 0.131 0.869 11 C 0.521 3.479 12 O -0.585 6.585 13 N -0.590 5.590 14 C 0.257 3.743 15 C -0.547 4.547 16 H 0.056 0.944 17 C 0.025 3.975 18 N -0.918 5.918 19 Si 0.953 3.047 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.265 1.265 23 C 0.115 3.885 24 C 0.055 3.945 25 O -0.407 6.407 26 C 0.028 3.972 27 C -0.136 4.136 28 C 0.518 3.482 29 O -0.570 6.570 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.020 0.980 43 H 0.033 0.967 44 H 0.266 0.734 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.033 0.967 49 H 0.036 0.964 50 H 0.090 0.910 51 H 0.059 0.941 52 H 0.124 0.876 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 5.264 -12.400 14.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.167 4.167 4 C 0.051 3.949 5 H 0.130 0.870 6 C -0.218 4.218 7 N -0.331 5.331 8 C 0.001 3.999 9 C -0.137 4.137 10 H 0.149 0.851 11 C 0.310 3.690 12 O -0.468 6.468 13 N -0.319 5.319 14 C 0.136 3.864 15 C -0.586 4.586 16 H 0.074 0.926 17 C -0.175 4.175 18 N -0.557 5.557 19 Si 0.779 3.221 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.008 4.008 24 C -0.022 4.022 25 O -0.326 6.326 26 C -0.068 4.068 27 C -0.176 4.176 28 C 0.307 3.693 29 O -0.450 6.450 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.039 0.961 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.114 0.886 47 H 0.100 0.900 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.109 0.891 51 H 0.078 0.922 52 H 0.142 0.858 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.111 5.834 -12.589 14.787 hybrid contribution 0.523 -0.500 0.731 1.029 sum -4.587 5.334 -11.858 13.788 Atomic orbital electron populations 1.21738 0.95420 1.01915 1.01574 1.21476 0.96240 0.95877 1.02062 1.21979 0.93713 0.98158 1.02842 1.21211 0.94348 0.94443 0.84926 0.87008 1.22098 1.00686 0.96427 1.02639 1.48373 1.50127 1.28701 1.05909 1.22123 0.94110 0.88020 0.95614 1.22210 0.91420 1.02332 0.97729 0.85102 1.20462 0.86742 0.79287 0.82498 1.90564 1.72987 1.49991 1.33210 1.48098 1.22817 1.48063 1.12932 1.19115 0.95461 0.89840 0.81936 1.21685 1.35502 0.95511 1.05854 0.92626 1.25603 0.94875 1.02406 0.94665 1.70031 1.39118 1.37014 1.09497 0.85684 0.78614 0.80102 0.77715 1.20216 1.21200 1.18972 1.21496 0.87012 0.89966 1.02317 1.22941 0.98566 0.97593 0.83114 1.88000 1.85860 1.29876 1.28885 1.22859 0.99826 0.84265 0.99829 1.22257 0.98583 0.99414 0.97378 1.20889 0.79533 0.83663 0.85246 1.90619 1.41675 1.28145 1.84592 0.91761 0.92087 0.94172 0.90412 0.93416 0.93260 0.89090 0.93597 0.89069 0.94099 0.89043 0.87455 0.96144 0.94906 0.92503 0.90069 0.88595 0.90029 0.94907 0.94556 0.89138 0.92237 0.85759 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.91 71.98 0.71 -1.85 16 2 C -0.12 -2.23 5.82 30.59 0.18 -2.06 16 3 C -0.13 -2.76 4.64 30.59 0.14 -2.61 16 4 C 0.15 3.54 2.86 44.99 0.13 3.67 16 5 H 0.11 2.05 8.07 -2.38 -0.02 2.03 16 6 C -0.16 -4.03 9.20 71.98 0.66 -3.37 16 7 N -0.60 -16.95 2.28 -794.04 -1.81 -18.76 16 8 C 0.12 3.29 6.60 86.83 0.57 3.87 16 9 C -0.12 -3.85 2.54 -10.48 -0.03 -3.88 16 10 H 0.13 4.51 7.34 -2.39 -0.02 4.49 16 11 C 0.52 20.33 6.86 87.66 0.60 20.93 16 12 O -0.58 -23.98 15.13 -3.03 -0.05 -24.02 16 13 N -0.59 -24.17 2.43 -826.16 -2.01 -26.18 16 14 C 0.26 12.06 4.49 85.63 0.38 12.45 16 15 C -0.55 -27.31 8.82 25.60 0.23 -27.08 16 16 H 0.06 2.78 7.81 -2.91 -0.02 2.75 16 17 C 0.03 1.28 5.46 84.66 0.46 1.74 16 18 N -0.92 -49.70 13.29 21.45 0.28 -49.42 16 19 Si 0.95 40.33 29.54 68.60 2.03 42.36 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 23 C 0.12 4.16 5.83 86.38 0.50 4.66 16 24 C 0.06 1.80 6.28 71.98 0.45 2.25 16 25 O -0.41 -14.65 9.63 -148.98 -1.43 -16.09 16 26 C 0.03 0.77 11.01 113.37 1.25 2.02 16 27 C -0.14 -4.65 5.26 30.59 0.16 -4.49 16 28 C 0.52 17.98 7.39 87.90 0.65 18.63 16 29 O -0.57 -23.03 15.07 -3.01 -0.05 -23.07 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.04 7.75 -2.39 -0.02 1.02 16 35 H 0.05 1.39 6.62 -2.39 -0.02 1.37 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.04 1.26 6.80 -2.39 -0.02 1.25 16 40 H 0.09 2.49 7.08 -2.39 -0.02 2.48 16 41 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.02 1.08 7.23 -2.39 -0.02 1.06 16 43 H 0.03 1.58 5.23 -2.39 -0.01 1.57 16 44 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 45 H 0.08 2.98 8.07 -2.39 -0.02 2.97 16 46 H 0.10 3.27 7.35 -2.39 -0.02 3.25 16 47 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 51 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.12 3.88 8.14 -2.38 -0.02 3.86 16 53 H 0.08 3.25 6.96 -2.39 -0.02 3.23 16 Total: -1.00 -65.01 420.27 4.89 -60.12 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.87 Total: 30.19 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 7.06 Total: 24.87 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -3.54 Total: -94.36 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -1.53 Total: -63.18 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -65.01 4.89 -60.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136625.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.206 kcal (2) G-P(sol) polarization free energy of solvation -65.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds