Wall clock time and date at job start Sat Apr 11 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47253 * 2 1 4 4 C 1.53002 * 109.47387 * 119.99812 * 2 1 3 5 5 N 1.46497 * 109.47270 * 175.00116 * 4 2 1 6 6 C 1.34783 * 120.00048 * 180.02562 * 5 4 2 7 7 O 1.21586 * 119.99710 * 354.91543 * 6 5 4 8 8 N 1.34777 * 120.00011 * 174.92172 * 6 5 4 9 9 C 1.46924 * 120.62929 * 185.02015 * 8 6 5 10 10 C 1.53194 * 108.77467 * 126.36581 * 9 8 6 11 11 C 1.53046 * 109.30878 * 54.63727 * 10 9 8 12 12 C 1.53046 * 109.53716 * 298.63395 * 11 10 9 13 13 H 1.08999 * 109.49182 * 301.41388 * 12 11 10 14 14 C 1.50695 * 109.49470 * 181.34967 * 12 11 10 15 15 O 1.20823 * 120.00359 * 0.02562 * 14 12 11 16 16 O 1.34232 * 119.99881 * 179.97438 * 14 12 11 17 17 C 1.45196 * 117.00039 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.47165 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47010 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.46937 * 179.97438 * 19 18 17 21 21 H 1.07995 * 120.00083 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00044 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00011 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99958 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46994 * 89.99689 * 24 22 20 26 26 H 1.48498 * 109.47174 * 209.99498 * 24 22 20 27 27 H 1.48499 * 109.46955 * 329.99672 * 24 22 20 28 28 C 1.46921 * 120.62940 * 4.74052 * 8 6 5 29 29 H 1.09008 * 109.46881 * 300.00146 * 1 2 3 30 30 H 1.08995 * 109.47056 * 59.99678 * 1 2 3 31 31 H 1.08998 * 109.46811 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47172 * 239.99664 * 2 1 3 33 33 H 1.09001 * 109.47101 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46668 * 300.00387 * 3 2 1 35 35 H 1.09000 * 109.46965 * 60.00074 * 3 2 1 36 36 H 1.08999 * 109.46775 * 54.99719 * 4 2 1 37 37 H 1.09007 * 109.47086 * 294.99950 * 4 2 1 38 38 H 0.96996 * 120.00484 * 359.97438 * 5 4 2 39 39 H 1.08995 * 109.58679 * 246.15856 * 9 8 6 40 40 H 1.08997 * 109.58558 * 6.58303 * 9 8 6 41 41 H 1.08998 * 109.49602 * 174.58168 * 10 9 8 42 42 H 1.08998 * 109.50128 * 294.65675 * 10 9 8 43 43 H 1.08997 * 109.46282 * 58.65401 * 11 10 9 44 44 H 1.08995 * 109.45555 * 178.61371 * 11 10 9 45 45 H 1.09003 * 109.47382 * 300.00089 * 17 16 14 46 46 H 1.09007 * 109.47548 * 60.00111 * 17 16 14 47 47 H 1.08998 * 109.46730 * 299.99799 * 18 17 16 48 48 H 1.08993 * 109.47366 * 59.99932 * 18 17 16 49 49 H 1.08998 * 109.47232 * 299.99518 * 19 18 17 50 50 H 1.09007 * 109.47603 * 60.00013 * 19 18 17 51 51 H 0.96995 * 120.00118 * 180.02562 * 23 22 20 52 52 H 1.09000 * 109.59217 * 353.41885 * 28 8 6 53 53 H 1.09005 * 109.58636 * 113.84385 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1731 -1.4291 2.1907 7 8 3.5797 -1.8030 3.1839 8 7 5.5039 -1.6172 2.0900 9 6 6.2337 -2.3689 3.1200 10 6 7.0278 -3.4901 2.4424 11 6 7.9188 -2.8912 1.3516 12 6 7.0462 -2.2104 0.2946 13 1 6.3560 -2.9386 -0.1314 14 6 7.9223 -1.6499 -0.7959 15 8 9.1218 -1.7815 -0.7347 16 8 7.3701 -1.0051 -1.8357 17 6 8.2747 -0.4922 -2.8490 18 6 7.4685 0.2065 -3.9458 19 6 8.4218 0.7476 -5.0132 20 6 7.6277 1.4352 -6.0938 21 1 6.5509 1.4819 -6.0258 22 6 8.2759 2.0046 -7.1693 23 7 9.5872 1.9481 -7.2519 24 14 7.2916 2.8575 -8.5084 25 1 7.1279 4.2928 -8.1643 26 1 8.0093 2.7375 -9.8028 27 1 5.9551 2.2202 -8.6224 28 6 6.2513 -1.0796 0.9450 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -1.7197 1.2952 37 1 1.7517 -0.1582 2.1370 38 1 3.9824 -0.4628 0.4316 39 1 6.9179 -1.7013 3.6436 40 1 5.5260 -2.7992 3.8286 41 1 7.6486 -3.9948 3.1826 42 1 6.3379 -4.2065 1.9966 43 1 8.5917 -2.1571 1.7947 44 1 8.5032 -3.6838 0.8844 45 1 8.9629 0.2206 -2.3945 46 1 8.8400 -1.3171 -3.2827 47 1 6.7801 -0.5059 -4.4004 48 1 6.9035 1.0314 -3.5119 49 1 9.1098 1.4601 -4.5583 50 1 8.9872 -0.0771 -5.4473 51 1 10.0433 2.3490 -8.0083 52 1 5.5553 -0.6595 0.2190 53 1 6.9371 -0.3047 1.2876 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741359815.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:24 Heat of formation + Delta-G solvation = -163.830730 kcal Electronic energy + Delta-G solvation = -30261.219023 eV Core-core repulsion = 26131.152531 eV Total energy + Delta-G solvation = -4130.066492 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01588 -41.22004 -38.88135 -37.83170 -37.43660 -35.92630 -34.68389 -33.81965 -33.48634 -32.40765 -29.03902 -28.03089 -27.59013 -26.04369 -25.86314 -24.72359 -22.72751 -22.14859 -21.56530 -21.30429 -20.46891 -19.27916 -18.76839 -18.37025 -17.89467 -17.35727 -17.26003 -16.78207 -16.48838 -16.20018 -15.76025 -15.55137 -15.47519 -15.07825 -14.87142 -14.66909 -14.47398 -14.29242 -14.09595 -13.87802 -13.74534 -13.71651 -13.47302 -13.24518 -12.89438 -12.82539 -12.65979 -12.50811 -12.36929 -12.17151 -12.08695 -12.03308 -11.95949 -11.83524 -11.78353 -11.74434 -11.59878 -11.39046 -11.37786 -11.23781 -11.18187 -10.56268 -10.26203 -9.59658 -8.20960 -6.32143 1.05472 1.42229 1.43586 1.46997 1.54862 1.69894 2.06116 2.42049 2.80166 3.13422 3.39818 3.57719 3.64657 3.81061 3.96818 3.98230 4.02683 4.07876 4.11402 4.12310 4.13651 4.32270 4.43877 4.46345 4.62435 4.62776 4.69303 4.72503 4.81040 4.82445 4.84539 4.87460 4.91439 4.96019 5.00315 5.07160 5.09035 5.10986 5.26965 5.31479 5.36603 5.38452 5.42033 5.45746 5.53732 5.55779 5.66027 5.81864 5.84952 6.20244 6.64817 6.84521 6.84711 7.37613 7.47464 8.91214 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008594 B = 0.002658 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.379399 B =10530.809446 C =13534.440746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.150 4.150 4 C 0.143 3.857 5 N -0.738 5.738 6 C 0.706 3.294 7 O -0.628 6.628 8 N -0.623 5.623 9 C 0.122 3.878 10 C -0.121 4.121 11 C -0.102 4.102 12 C -0.085 4.085 13 H 0.126 0.874 14 C 0.465 3.535 15 O -0.533 6.533 16 O -0.352 6.352 17 C 0.078 3.922 18 C -0.093 4.093 19 C 0.025 3.975 20 C -0.541 4.541 21 H 0.067 0.933 22 C -0.001 4.001 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.260 1.260 28 C 0.125 3.875 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.406 0.594 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.067 0.933 48 H 0.070 0.930 49 H -0.004 1.004 50 H -0.005 1.005 51 H 0.264 0.736 52 H 0.100 0.900 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.669 -8.001 20.396 25.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.207 4.207 4 C 0.019 3.981 5 N -0.396 5.396 6 C 0.407 3.593 7 O -0.510 6.510 8 N -0.360 5.360 9 C 0.000 4.000 10 C -0.159 4.159 11 C -0.140 4.140 12 C -0.105 4.105 13 H 0.144 0.856 14 C 0.308 3.692 15 O -0.422 6.422 16 O -0.269 6.269 17 C 0.004 3.996 18 C -0.130 4.130 19 C -0.012 4.012 20 C -0.579 4.579 21 H 0.085 0.915 22 C -0.199 4.199 23 N -0.575 5.575 24 Si 0.790 3.210 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.184 1.184 28 C 0.001 3.999 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.245 0.755 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.015 0.985 50 H 0.013 0.987 51 H 0.073 0.927 52 H 0.118 0.882 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.623 -8.240 20.988 26.344 hybrid contribution 0.603 0.671 -1.403 1.668 sum -13.019 -7.570 19.585 24.706 Atomic orbital electron populations 1.21752 0.93194 1.02498 1.02677 1.21332 0.97322 0.96547 0.96984 1.21879 1.01007 0.95479 1.02377 1.21327 0.77824 1.00314 0.98598 1.45363 1.08300 1.62509 1.23455 1.15957 0.81462 0.78766 0.83106 1.90884 1.68359 1.59210 1.32509 1.47256 1.05272 1.58306 1.25150 1.21670 0.95282 0.93509 0.89575 1.21893 0.98480 0.97358 0.98212 1.21445 0.97101 1.00635 0.94805 1.21422 0.97452 0.99564 0.92078 0.85579 1.24075 0.88144 0.74674 0.82331 1.90673 1.17882 1.55799 1.77854 1.86472 1.42238 1.66136 1.32027 1.23135 0.91792 0.97695 0.86973 1.21442 0.98492 0.99455 0.93638 1.18939 0.94515 0.94774 0.93009 1.21635 0.94093 1.35704 1.06431 0.91514 1.25994 0.95930 0.97040 1.00948 1.70097 1.09247 1.46231 1.31897 0.85427 0.78870 0.78891 0.77766 1.19752 1.21059 1.18407 1.21449 0.95985 0.94299 0.88141 0.92199 0.91488 0.92064 0.90022 0.92831 0.91809 0.92521 0.92233 0.92446 0.75515 0.90250 0.89636 0.87773 0.91204 0.90826 0.90727 0.91815 0.92154 0.91460 0.91090 0.98533 0.98695 0.92750 0.88169 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.19 71.98 0.66 -0.85 16 2 C -0.10 -1.26 2.96 -10.79 -0.03 -1.29 16 3 C -0.15 -1.89 9.07 71.98 0.65 -1.24 16 4 C 0.14 2.27 5.07 86.38 0.44 2.71 16 5 N -0.74 -12.49 5.20 -478.52 -2.49 -14.97 16 6 C 0.71 15.30 8.30 179.05 1.49 16.78 16 7 O -0.63 -18.40 15.79 -3.99 -0.06 -18.46 16 8 N -0.62 -10.59 2.98 -837.76 -2.49 -13.08 16 9 C 0.12 1.77 6.42 86.36 0.55 2.33 16 10 C -0.12 -1.39 6.08 30.67 0.19 -1.20 16 11 C -0.10 -1.51 4.46 30.62 0.14 -1.38 16 12 C -0.09 -1.41 2.76 -11.61 -0.03 -1.44 16 13 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 14 C 0.46 11.62 7.26 71.23 0.52 12.13 16 15 O -0.53 -16.79 15.73 21.97 0.35 -16.45 16 16 O -0.35 -9.74 10.15 -51.44 -0.52 -10.26 16 17 C 0.08 2.61 5.47 71.98 0.39 3.00 16 18 C -0.09 -3.54 5.53 30.60 0.17 -3.37 16 19 C 0.02 1.25 4.97 29.85 0.15 1.40 16 20 C -0.54 -29.53 9.11 25.60 0.23 -29.29 16 21 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 22 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 23 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 24 Si 0.97 42.85 29.54 68.60 2.03 44.88 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 27 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 28 C 0.13 1.86 5.62 86.22 0.48 2.34 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 0.69 7.18 -2.39 -0.02 0.68 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.41 5.53 5.11 -92.71 -0.47 5.05 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 1.49 7.03 -2.39 -0.02 1.47 16 41 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 44 H 0.07 1.20 8.07 -2.39 -0.02 1.18 16 45 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 46 H 0.06 2.11 8.13 -2.38 -0.02 2.09 16 47 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 49 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 50 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 51 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 52 H 0.10 1.31 5.57 -2.39 -0.01 1.30 16 53 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -70.89 423.53 3.95 -66.94 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.40 Total: 15.93 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 6.46 Total: 1.04 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -4.70 Total: -83.63 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -0.24 Total: -45.16 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -70.89 3.95 -66.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741359815.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.888 kcal (2) G-P(sol) polarization free energy of solvation -70.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds