Wall clock time and date at job start Sat Apr 11 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46892 * 2 1 4 4 C 1.52994 * 109.47091 * 119.99555 * 2 1 3 5 5 N 1.46497 * 109.47245 * 175.00350 * 4 2 1 6 6 C 1.34776 * 120.00245 * 180.02562 * 5 4 2 7 7 O 1.21582 * 120.00089 * 354.91776 * 6 5 4 8 8 N 1.34781 * 120.00052 * 174.92353 * 6 5 4 9 9 C 1.46923 * 120.63081 * 4.73468 * 8 6 5 10 10 C 1.52760 * 109.01335 * 233.58744 * 9 8 6 11 11 C 1.53037 * 109.38212 * 305.59174 * 10 9 8 12 12 C 1.53049 * 109.53809 * 61.23822 * 11 10 9 13 13 H 1.08996 * 109.49841 * 58.58798 * 12 11 10 14 14 C 1.50705 * 109.52146 * 178.66777 * 12 11 10 15 15 O 1.20822 * 120.00318 * 359.84996 * 14 12 11 16 16 O 1.34231 * 119.99318 * 179.85684 * 14 12 11 17 17 C 1.45202 * 116.99326 * 179.97438 * 16 14 12 18 18 C 1.53000 * 109.47041 * 179.97438 * 17 16 14 19 19 C 1.52994 * 109.47382 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.47450 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99980 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00335 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99857 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99911 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47409 * 60.00035 * 24 22 20 26 26 H 1.48507 * 109.47049 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47364 * 299.99697 * 24 22 20 28 28 C 1.46924 * 120.63014 * 185.02400 * 8 6 5 29 29 H 1.09002 * 109.47104 * 300.00187 * 1 2 3 30 30 H 1.09003 * 109.47060 * 60.00298 * 1 2 3 31 31 H 1.08997 * 109.46944 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47419 * 240.00317 * 2 1 3 33 33 H 1.08992 * 109.47365 * 59.99409 * 3 2 1 34 34 H 1.09004 * 109.46929 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47024 * 299.99724 * 3 2 1 36 36 H 1.09003 * 109.47102 * 294.99991 * 4 2 1 37 37 H 1.09004 * 109.47037 * 55.00203 * 4 2 1 38 38 H 0.97000 * 119.99749 * 359.97438 * 5 4 2 39 39 H 1.09002 * 109.58480 * 353.42791 * 9 8 6 40 40 H 1.09003 * 109.58523 * 113.84504 * 9 8 6 41 41 H 1.08992 * 109.56693 * 185.55508 * 10 9 8 42 42 H 1.08998 * 109.35540 * 65.50024 * 10 9 8 43 43 H 1.08998 * 109.46365 * 301.21694 * 11 10 9 44 44 H 1.08999 * 109.46246 * 181.25891 * 11 10 9 45 45 H 1.08998 * 109.47108 * 299.99680 * 17 16 14 46 46 H 1.08998 * 109.47166 * 59.99743 * 17 16 14 47 47 H 1.09002 * 109.46992 * 300.00404 * 18 17 16 48 48 H 1.09002 * 109.47057 * 59.99493 * 18 17 16 49 49 H 1.09002 * 109.47192 * 300.00042 * 19 18 17 50 50 H 1.08998 * 109.47190 * 59.99745 * 19 18 17 51 51 H 0.96996 * 119.99865 * 180.02562 * 23 22 20 52 52 H 1.08993 * 109.58635 * 246.15217 * 28 8 6 53 53 H 1.09002 * 109.58496 * 6.57471 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 3.5000 -0.8262 1.1907 6 6 4.1730 -1.4289 2.1908 7 8 3.5796 -1.8029 3.1839 8 7 5.5038 -1.6169 2.0902 9 6 6.2513 -1.0795 0.9451 10 6 7.0462 -2.2103 0.2947 11 6 7.9187 -2.8910 1.3518 12 6 7.0278 -3.4898 2.4426 13 1 6.3379 -4.2060 1.9964 14 6 7.8854 -4.1883 3.4663 15 8 9.0864 -4.2082 3.3359 16 8 7.3148 -4.7884 4.5227 17 6 8.2022 -5.4420 5.4681 18 6 7.3768 -6.0640 6.5962 19 6 8.3118 -6.7522 7.5926 20 6 7.4987 -7.3654 8.7035 21 1 6.4227 -7.2731 8.6994 22 6 8.1285 -8.0442 9.7250 23 7 9.4388 -8.1570 9.7298 24 14 7.1206 -8.8036 11.1022 25 1 6.1797 -9.8024 10.5344 26 1 8.0281 -9.4728 12.0688 27 1 6.3528 -7.7401 11.7982 28 6 6.2336 -2.3687 3.1202 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.7516 -0.1581 2.1370 37 1 1.6054 -1.7197 1.2952 38 1 3.9823 -0.4626 0.4317 39 1 5.5552 -0.6594 0.2191 40 1 6.9370 -0.3045 1.2877 41 1 7.6800 -1.8044 -0.4937 42 1 6.3561 -2.9385 -0.1313 43 1 8.5916 -2.1569 1.7949 44 1 8.5033 -3.6836 0.8847 45 1 8.7662 -6.2224 4.9572 46 1 8.8925 -4.7088 5.8851 47 1 6.8131 -5.2833 7.1069 48 1 6.6862 -6.7971 6.1794 49 1 8.8758 -7.5328 7.0822 50 1 9.0021 -6.0187 8.0094 51 1 9.8818 -8.6349 10.4482 52 1 6.9179 -1.7011 3.6437 53 1 5.5259 -2.7990 3.8288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741359818.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:27 Heat of formation + Delta-G solvation = -164.350669 kcal Electronic energy + Delta-G solvation = -29668.656971 eV Core-core repulsion = 25538.567932 eV Total energy + Delta-G solvation = -4130.089038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.00660 -41.24922 -38.88872 -37.84478 -37.46065 -35.96232 -34.78265 -33.73672 -33.46984 -32.42366 -29.07486 -28.02460 -27.64387 -26.32776 -25.46571 -24.73618 -22.88252 -22.19384 -21.51967 -21.34023 -20.48614 -19.29297 -18.77858 -18.36475 -17.87445 -17.39454 -17.30319 -16.78997 -16.51344 -16.13659 -15.86635 -15.53385 -15.41589 -15.14385 -14.81216 -14.68132 -14.42097 -14.23704 -14.17263 -13.88763 -13.80684 -13.75367 -13.52733 -13.26161 -12.88532 -12.82335 -12.64195 -12.54997 -12.40653 -12.11481 -12.07592 -12.04300 -11.96973 -11.83202 -11.81380 -11.73580 -11.60561 -11.43935 -11.42985 -11.28102 -11.18142 -10.57962 -10.26627 -9.59163 -8.22917 -6.34481 0.99800 1.39777 1.43487 1.44924 1.51597 1.71263 2.07768 2.40406 2.87466 3.10550 3.44934 3.58707 3.66914 3.79788 3.95908 3.97377 3.98492 4.01267 4.02945 4.11163 4.14963 4.38842 4.46804 4.48861 4.62124 4.66579 4.69092 4.71381 4.76922 4.80875 4.83833 4.85417 4.86680 4.98978 5.02796 5.04855 5.06912 5.10507 5.25183 5.33153 5.35265 5.37710 5.42871 5.43474 5.50456 5.54894 5.61687 5.78335 5.86520 6.17988 6.61695 6.80546 6.91812 7.34726 7.50276 8.88919 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.001893 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.701246 B =14788.779804 C =16584.991731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.148 4.148 4 C 0.139 3.861 5 N -0.728 5.728 6 C 0.701 3.299 7 O -0.636 6.636 8 N -0.624 5.624 9 C 0.103 3.897 10 C -0.124 4.124 11 C -0.102 4.102 12 C -0.084 4.084 13 H 0.120 0.880 14 C 0.463 3.537 15 O -0.531 6.531 16 O -0.359 6.359 17 C 0.078 3.922 18 C -0.096 4.096 19 C 0.027 3.973 20 C -0.547 4.547 21 H 0.062 0.938 22 C 0.000 4.000 23 N -0.931 5.931 24 Si 0.969 3.031 25 H -0.266 1.266 26 H -0.281 1.281 27 H -0.267 1.267 28 C 0.144 3.856 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.410 0.590 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.064 0.936 49 H -0.001 1.001 50 H -0.002 1.002 51 H 0.265 0.735 52 H 0.076 0.924 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.828 21.723 -29.794 39.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.206 4.206 4 C 0.015 3.985 5 N -0.387 5.387 6 C 0.402 3.598 7 O -0.517 6.517 8 N -0.361 5.361 9 C -0.018 4.018 10 C -0.162 4.162 11 C -0.140 4.140 12 C -0.104 4.104 13 H 0.137 0.863 14 C 0.307 3.693 15 O -0.420 6.420 16 O -0.276 6.276 17 C 0.005 3.995 18 C -0.133 4.133 19 C -0.010 4.010 20 C -0.584 4.584 21 H 0.081 0.919 22 C -0.198 4.198 23 N -0.571 5.571 24 Si 0.793 3.207 25 H -0.191 1.191 26 H -0.207 1.207 27 H -0.192 1.192 28 C 0.019 3.981 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.250 0.750 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.017 0.983 50 H 0.016 0.984 51 H 0.074 0.926 52 H 0.094 0.906 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.774 21.376 -29.014 38.235 hybrid contribution 0.386 -0.722 1.044 1.327 sum -12.388 20.653 -27.970 36.910 Atomic orbital electron populations 1.21780 0.93663 1.02326 1.02679 1.21307 0.96929 0.96786 0.96623 1.21875 1.01293 0.95015 1.02368 1.21350 0.78032 1.00142 0.98952 1.45141 1.07878 1.62514 1.23164 1.16058 0.81573 0.78930 0.83243 1.90935 1.68729 1.59012 1.32990 1.47208 1.05328 1.57605 1.25920 1.21948 0.96194 0.96716 0.86989 1.21853 0.98892 0.97848 0.97571 1.21472 0.97040 1.00928 0.94559 1.21528 0.97557 0.97883 0.93443 0.86262 1.24162 0.88019 0.75875 0.81279 1.90646 1.17346 1.58206 1.75813 1.86528 1.42613 1.64433 1.34008 1.23137 0.92019 0.95890 0.88497 1.21468 0.98560 0.99410 0.93906 1.18924 0.94487 0.94412 0.93198 1.21590 0.93995 1.34766 1.08087 0.91935 1.25995 0.96129 0.96668 1.00990 1.70088 1.09676 1.43130 1.34218 0.85448 0.78326 0.78747 0.78210 1.19125 1.20674 1.19188 1.21144 0.95086 0.92016 0.89814 0.92769 0.90882 0.92493 0.89153 0.93268 0.92130 0.91168 0.93160 0.92918 0.74968 0.87600 0.89563 0.86852 0.90743 0.90857 0.90728 0.91671 0.91696 0.91803 0.91710 0.98311 0.98350 0.92639 0.90603 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.19 71.98 0.66 -0.32 16 2 C -0.10 -0.65 2.96 -10.79 -0.03 -0.68 16 3 C -0.15 -0.80 9.07 71.98 0.65 -0.14 16 4 C 0.14 1.89 5.07 86.38 0.44 2.33 16 5 N -0.73 -9.68 5.20 -478.55 -2.49 -12.16 16 6 C 0.70 15.34 8.30 179.05 1.49 16.83 16 7 O -0.64 -20.99 15.78 -3.97 -0.06 -21.05 16 8 N -0.62 -10.65 2.98 -837.77 -2.50 -13.14 16 9 C 0.10 0.76 6.40 86.22 0.55 1.32 16 10 C -0.12 -0.87 6.06 30.53 0.19 -0.68 16 11 C -0.10 -1.50 4.47 30.62 0.14 -1.37 16 12 C -0.08 -1.73 2.78 -11.46 -0.03 -1.77 16 13 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.46 13.83 7.26 71.24 0.52 14.35 16 15 O -0.53 -18.33 15.73 21.98 0.35 -17.98 16 16 O -0.36 -12.43 10.15 -51.43 -0.52 -12.95 16 17 C 0.08 3.01 5.47 71.98 0.39 3.41 16 18 C -0.10 -4.19 5.53 30.59 0.17 -4.02 16 19 C 0.03 1.46 4.97 29.85 0.15 1.61 16 20 C -0.55 -31.87 9.11 25.60 0.23 -31.63 16 21 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 22 C 0.00 0.01 5.46 84.65 0.46 0.48 16 23 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 24 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 C 0.14 3.14 5.63 86.36 0.49 3.63 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.06 0.24 7.18 -2.39 -0.02 0.22 16 35 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.41 2.52 5.11 -92.71 -0.47 2.05 16 39 H 0.11 0.18 5.57 -2.39 -0.01 0.17 16 40 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 43 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 44 H 0.07 1.19 8.07 -2.39 -0.02 1.17 16 45 H 0.06 2.52 8.13 -2.39 -0.02 2.50 16 46 H 0.06 2.52 8.13 -2.39 -0.02 2.50 16 47 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 48 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 49 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 50 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 51 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 52 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 53 H 0.08 2.30 7.03 -2.39 -0.02 2.29 16 Total: -1.00 -78.29 423.53 3.95 -74.34 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.40 Total: 9.66 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 6.46 Total: 3.32 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -4.70 Total: -82.46 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -0.24 Total: -51.98 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -78.29 3.95 -74.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741359818.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.006 kcal (2) G-P(sol) polarization free energy of solvation -78.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds