Wall clock time and date at job start Sat Apr 11 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00106 * 2 1 4 4 O 1.20829 * 119.99829 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00223 * 180.02562 * 3 2 1 6 6 C 1.53040 * 109.46421 * 179.97438 * 5 3 2 7 7 C 1.53185 * 109.31264 * 181.36904 * 6 5 3 8 8 N 1.46924 * 108.77937 * 305.36168 * 7 6 5 9 9 C 1.34772 * 120.63693 * 233.59007 * 8 7 6 10 10 O 1.21280 * 119.99754 * 359.97438 * 9 8 7 11 11 C 1.50699 * 120.00546 * 180.02562 * 9 8 7 12 12 N 1.46900 * 109.47548 * 184.23062 * 11 9 8 13 13 C 1.46893 * 111.00060 * 163.40111 * 12 11 9 14 14 C 1.50702 * 109.46896 * 199.41969 * 13 12 11 15 15 H 1.07998 * 119.99902 * 5.39185 * 14 13 12 16 16 C 1.37880 * 120.00026 * 185.39960 * 14 13 12 17 17 N 1.31521 * 120.00027 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00162 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47010 * 59.99890 * 18 16 14 20 20 H 1.48502 * 109.46986 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46928 * 299.99805 * 18 16 14 22 22 C 1.46896 * 110.99611 * 287.35721 * 12 11 9 23 23 C 1.52998 * 109.47239 * 162.09011 * 22 12 11 24 24 C 1.53000 * 109.47668 * 179.75288 * 23 22 12 25 25 C 1.53001 * 109.47332 * 299.75553 * 23 22 12 26 26 C 1.46932 * 118.73314 * 53.86334 * 8 7 6 27 27 C 1.53045 * 109.44620 * 300.05911 * 5 3 2 28 28 H 1.09004 * 109.47009 * 299.99912 * 1 2 3 29 29 H 1.09000 * 109.46880 * 59.99937 * 1 2 3 30 30 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46362 * 60.01926 * 5 3 2 32 32 H 1.09003 * 109.49166 * 61.41566 * 6 5 3 33 33 H 1.09004 * 109.51917 * 301.33999 * 6 5 3 34 34 H 1.09004 * 109.58257 * 185.57794 * 7 6 5 35 35 H 1.09001 * 109.70509 * 65.22253 * 7 6 5 36 36 H 1.08993 * 109.47245 * 64.22382 * 11 9 8 37 37 H 1.09002 * 109.46798 * 304.22983 * 11 9 8 38 38 H 1.08999 * 109.47513 * 319.42278 * 13 12 11 39 39 H 1.09002 * 109.47204 * 79.41936 * 13 12 11 40 40 H 0.96993 * 120.00313 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47150 * 282.09034 * 22 12 11 42 42 H 1.09000 * 109.47306 * 42.09019 * 22 12 11 43 43 H 1.09008 * 109.46935 * 59.75305 * 23 22 12 44 44 H 1.09001 * 109.47011 * 59.99662 * 24 23 22 45 45 H 1.08996 * 109.47330 * 180.02562 * 24 23 22 46 46 H 1.09011 * 109.46786 * 300.00696 * 24 23 22 47 47 H 1.08996 * 109.47011 * 304.79333 * 25 23 22 48 48 H 1.09001 * 109.46870 * 64.79250 * 25 23 22 49 49 H 1.08997 * 109.47190 * 184.79032 * 25 23 22 50 50 H 1.08992 * 109.59055 * 65.92829 * 26 8 7 51 51 H 1.09004 * 109.58228 * 186.35180 * 26 8 7 52 52 H 1.08999 * 109.49508 * 298.57386 * 27 5 3 53 53 H 1.08997 * 109.49647 * 58.66518 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7425 -0.0011 7 6 5.5296 2.8188 -0.0362 8 7 6.0682 2.0309 1.0808 9 6 6.9349 2.5809 1.9541 10 8 7.2777 3.7367 1.8218 11 6 7.4790 1.7595 3.0944 12 7 8.3154 2.6080 3.9538 13 6 8.5397 1.9751 5.2603 14 6 8.9677 3.0204 6.2579 15 1 8.9796 4.0629 5.9762 16 6 9.3442 2.6458 7.5303 17 7 9.3293 1.3762 7.8735 18 14 9.8753 3.9413 8.7667 19 1 8.7623 4.8990 8.9892 20 1 10.2270 3.2848 10.0514 21 1 11.0582 4.6702 8.2426 22 6 9.5903 2.9271 3.2975 23 6 10.2299 4.1347 3.9856 24 6 11.5607 4.4634 3.3061 25 6 9.2918 5.3386 3.8789 26 6 5.6487 0.6301 1.2241 27 6 4.1135 0.5794 1.2481 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.9556 0.7812 -0.8910 32 1 3.6320 3.2309 0.9012 33 1 3.5905 3.2430 -0.8786 34 1 5.8460 3.8572 0.0630 35 1 5.8962 2.4136 -0.9794 36 1 8.0789 0.9403 2.6983 37 1 6.6519 1.3550 3.6778 38 1 7.6167 1.5052 5.5997 39 1 9.3198 1.2192 5.1687 40 1 9.5938 1.1127 8.7687 41 1 10.2606 2.0706 3.3698 42 1 9.4104 3.1601 2.2480 43 1 10.4058 3.9032 5.0362 44 1 11.3849 4.6948 2.2556 45 1 12.0165 5.3234 3.7967 46 1 12.2291 3.6056 3.3822 47 1 9.0480 5.5175 2.8317 48 1 8.3767 5.1366 4.4357 49 1 9.7823 6.2193 4.2933 50 1 6.0227 0.0485 0.3816 51 1 6.0437 0.2238 2.1553 52 1 3.7444 1.0878 2.1388 53 1 3.7847 -0.4597 1.2593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755669165.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:33 Heat of formation + Delta-G solvation = -138.329617 kcal Electronic energy + Delta-G solvation = -31255.366948 eV Core-core repulsion = 27126.406267 eV Total energy + Delta-G solvation = -4128.960681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.84998 -41.00347 -39.08047 -38.03031 -37.42394 -35.21444 -34.55507 -34.11361 -32.27774 -29.95992 -29.05125 -28.25577 -27.77350 -26.74493 -25.69878 -24.24232 -23.28430 -22.53147 -21.28585 -20.62602 -19.92778 -18.77205 -18.51421 -18.11195 -17.58797 -17.24802 -16.78808 -16.67898 -16.55073 -16.18729 -15.44747 -15.27639 -15.14378 -14.99603 -14.77267 -14.46786 -14.26245 -14.07865 -14.05409 -13.90802 -13.77710 -13.44997 -13.15952 -13.09970 -13.00817 -12.83472 -12.79688 -12.67273 -12.51363 -12.30925 -12.26860 -11.89228 -11.86683 -11.78850 -11.68951 -11.62735 -11.45308 -11.40839 -11.35046 -10.87074 -10.55681 -10.41489 -9.60532 -8.89789 -8.11464 -6.14193 1.11557 1.43522 1.44927 1.52246 1.67686 1.77009 2.02031 2.45628 3.20354 3.33426 3.45789 3.65351 3.71379 3.79909 4.03866 4.18737 4.22165 4.28186 4.30828 4.31385 4.32171 4.35958 4.40367 4.44142 4.56785 4.65226 4.70160 4.73091 4.77466 4.78931 4.83406 4.87913 4.96193 4.98050 5.07251 5.13901 5.17955 5.18811 5.23663 5.25695 5.35751 5.37207 5.47088 5.62602 5.70933 5.85034 5.92475 6.16277 6.39204 6.44353 6.67959 6.71397 6.98965 7.34312 7.50501 8.98611 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014803 B = 0.002609 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.085661 B =10728.690304 C =11761.566964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.542 6.542 5 C -0.072 4.072 6 C -0.111 4.111 7 C 0.118 3.882 8 N -0.618 5.618 9 C 0.518 3.482 10 O -0.552 6.552 11 C 0.036 3.964 12 N -0.530 5.530 13 C 0.211 3.789 14 C -0.507 4.507 15 H 0.078 0.922 16 C 0.005 3.995 17 N -0.934 5.934 18 Si 0.950 3.050 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.091 3.909 23 C -0.110 4.110 24 C -0.135 4.135 25 C -0.107 4.107 26 C 0.106 3.894 27 C -0.122 4.122 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.006 0.994 39 H -0.027 1.027 40 H 0.261 0.739 41 H 0.009 0.991 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.043 0.957 48 H 0.039 0.961 49 H 0.040 0.960 50 H 0.107 0.893 51 H 0.094 0.906 52 H 0.054 0.946 53 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.646 -6.457 -20.204 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.432 6.432 5 C -0.091 4.091 6 C -0.150 4.150 7 C -0.004 4.004 8 N -0.353 5.353 9 C 0.306 3.694 10 O -0.429 6.429 11 C -0.095 4.095 12 N -0.255 5.255 13 C 0.085 3.915 14 C -0.545 4.545 15 H 0.096 0.904 16 C -0.193 4.193 17 N -0.576 5.576 18 Si 0.776 3.224 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.037 4.037 23 C -0.128 4.128 24 C -0.193 4.193 25 C -0.165 4.165 26 C -0.016 4.016 27 C -0.160 4.160 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.024 0.976 39 H -0.009 1.009 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.125 0.875 51 H 0.112 0.888 52 H 0.073 0.927 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.912 -5.231 -20.042 23.895 hybrid contribution 0.138 -0.142 1.034 1.053 sum -11.774 -5.374 -19.008 22.996 Atomic orbital electron populations 1.23529 0.75115 1.05683 1.02265 1.86499 1.24670 1.32673 1.83531 1.24219 0.92740 0.81096 0.70913 1.90675 1.68098 1.37647 1.46777 1.21147 0.85607 0.98771 1.03552 1.21741 0.95369 0.94519 1.03339 1.21571 0.91961 0.97383 0.89512 1.48256 1.45060 1.13707 1.28280 1.20796 0.78615 0.87380 0.82640 1.90647 1.59544 1.18696 1.74026 1.22024 0.98948 0.94537 0.93993 1.61657 1.16460 1.44174 1.03172 1.19476 0.93888 0.92814 0.85351 1.21686 1.41963 0.95059 0.95775 0.90375 1.25721 0.96454 0.96976 1.00126 1.70054 1.50261 1.16886 1.20379 0.85724 0.79044 0.79418 0.78259 1.19900 1.21157 1.19288 1.21877 0.88694 0.96102 0.97029 1.21438 0.94710 0.94947 1.01741 1.21745 0.96269 1.01030 1.00248 1.21391 0.98804 0.96010 1.00253 1.22091 0.93761 0.80775 1.05008 1.21995 0.95609 1.02836 0.95550 0.92601 0.91915 0.84970 0.83678 0.93364 0.89184 0.90759 0.88432 0.91082 0.88124 0.97632 1.00936 0.93040 0.97251 0.91718 0.90162 0.92581 0.92390 0.93182 0.93822 0.94174 0.94120 0.87502 0.88753 0.92689 0.86770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.47 10.44 -51.40 -0.54 -6.01 16 3 C 0.47 8.59 7.25 71.24 0.52 9.11 16 4 O -0.54 -13.90 15.73 21.96 0.35 -13.56 16 5 C -0.07 -0.98 2.59 -11.51 -0.03 -1.01 16 6 C -0.11 -1.99 4.65 30.67 0.14 -1.84 16 7 C 0.12 2.23 6.43 86.36 0.56 2.79 16 8 N -0.62 -13.60 2.97 -818.09 -2.43 -16.02 16 9 C 0.52 16.38 7.34 87.66 0.64 17.02 16 10 O -0.55 -21.69 14.23 -3.03 -0.04 -21.73 16 11 C 0.04 1.21 3.85 85.56 0.33 1.54 16 12 N -0.53 -22.90 3.45 -905.40 -3.12 -26.02 16 13 C 0.21 10.78 4.76 85.56 0.41 11.19 16 14 C -0.51 -27.92 6.93 25.60 0.18 -27.74 16 15 H 0.08 4.28 4.52 -2.91 -0.01 4.27 16 16 C 0.00 0.26 5.46 84.65 0.46 0.73 16 17 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 18 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 19 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 C 0.09 3.70 3.94 86.30 0.34 4.04 16 23 C -0.11 -4.49 2.40 -10.79 -0.03 -4.51 16 24 C -0.14 -4.48 9.19 71.98 0.66 -3.81 16 25 C -0.11 -4.36 8.41 71.98 0.61 -3.76 16 26 C 0.11 1.49 6.37 86.51 0.55 2.04 16 27 C -0.12 -1.61 5.31 30.82 0.16 -1.44 16 28 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 29 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 30 H 0.13 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 33 H 0.09 1.48 8.07 -2.38 -0.02 1.46 16 34 H 0.07 1.83 7.01 -2.38 -0.02 1.81 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 2.09 7.98 -2.39 -0.02 2.07 16 37 H 0.10 3.21 7.02 -2.39 -0.02 3.19 16 38 H 0.01 0.30 7.64 -2.39 -0.02 0.28 16 39 H -0.03 -1.50 7.76 -2.39 -0.02 -1.52 16 40 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.01 0.39 7.78 -2.38 -0.02 0.37 16 42 H 0.06 2.53 6.33 -2.39 -0.02 2.51 16 43 H 0.08 3.85 4.88 -2.38 -0.01 3.84 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 47 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 48 H 0.04 1.84 6.73 -2.39 -0.02 1.83 16 49 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.09 1.40 5.90 -2.38 -0.01 1.38 16 52 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.11 1.02 8.08 -2.39 -0.02 1.00 16 Total: -1.00 -73.87 410.19 4.11 -69.77 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.88 Total: 16.00 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 6.70 Total: 5.84 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -5.27 Total: -96.90 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.23 Total: -41.30 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -73.87 4.11 -69.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755669165.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.563 kcal (2) G-P(sol) polarization free energy of solvation -73.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds