Wall clock time and date at job start Sat Apr 11 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00194 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.53001 * 109.46989 * 240.00202 * 2 1 3 13 13 N 1.46499 * 109.47073 * 59.99821 * 12 2 1 14 14 C 1.34784 * 119.99897 * 179.97438 * 13 12 2 15 15 O 1.21588 * 119.99850 * 0.02562 * 14 13 12 16 16 N 1.34769 * 120.00175 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00212 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47241 * 180.02562 * 17 16 14 19 19 H 1.08992 * 110.64557 * 308.14151 * 18 17 16 20 20 C 1.54482 * 110.72118 * 185.00087 * 18 17 16 21 21 O 1.43955 * 105.07973 * 219.89290 * 20 18 17 22 22 C 1.43456 * 107.01551 * 358.62297 * 21 20 18 23 23 C 1.52658 * 110.08576 * 265.55416 * 22 21 20 24 24 C 1.53065 * 109.48890 * 297.39448 * 23 22 21 25 25 C 1.52986 * 109.44518 * 300.60317 * 24 23 22 26 26 C 1.53001 * 109.54789 * 60.29248 * 25 24 23 27 27 C 1.52654 * 110.07903 * 143.66278 * 22 21 20 28 28 O 1.44030 * 106.62843 * 24.60584 * 22 21 20 29 29 H 1.08997 * 109.47359 * 300.00345 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99868 * 1 2 3 31 31 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47106 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47089 * 299.99981 * 3 2 1 34 34 H 1.08995 * 109.47131 * 60.00150 * 3 2 1 35 35 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.46926 * 179.97438 * 12 2 1 37 37 H 1.08998 * 109.46837 * 300.00010 * 12 2 1 38 38 H 0.96991 * 120.00466 * 0.02562 * 13 12 2 39 39 H 0.97005 * 119.99982 * 0.02562 * 16 14 13 40 40 H 1.08994 * 109.47269 * 300.00495 * 17 16 14 41 41 H 1.09000 * 109.47094 * 60.00574 * 17 16 14 42 42 H 1.09003 * 110.31313 * 338.79231 * 20 18 17 43 43 H 1.08999 * 110.31893 * 100.98865 * 20 18 17 44 44 H 1.08999 * 109.47301 * 57.40036 * 23 22 21 45 45 H 1.09002 * 109.46674 * 177.39371 * 23 22 21 46 46 H 1.09000 * 109.47320 * 180.61037 * 24 23 22 47 47 H 1.08997 * 109.48071 * 60.60299 * 24 23 22 48 48 H 1.09008 * 109.46127 * 300.26972 * 25 24 23 49 49 H 1.09001 * 109.44798 * 180.31211 * 25 24 23 50 50 H 1.09001 * 109.48555 * 179.70892 * 26 25 24 51 51 H 1.09011 * 109.47545 * 59.68078 * 26 25 24 52 52 H 1.08998 * 109.46646 * 182.59661 * 27 22 21 53 53 H 1.09005 * 109.46915 * 302.58838 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.3427 -2.1618 4.4118 10 1 3.6293 -1.7584 3.7121 11 1 2.4865 -0.1414 5.1122 12 6 2.0400 -0.7212 -1.2493 13 7 1.5516 -0.0306 -2.4454 14 6 1.8776 -0.4907 -3.6696 15 8 2.5766 -1.4793 -3.7812 16 7 1.4279 0.1442 -4.7700 17 6 1.7818 -0.3562 -6.1005 18 6 1.1486 0.5393 -7.1673 19 1 0.0810 0.6596 -6.9837 20 6 1.3989 -0.0330 -8.5802 21 8 1.6787 1.1136 -9.4045 22 6 1.5698 2.2712 -8.5643 23 6 0.1672 2.8646 -8.6685 24 6 -0.0857 3.3282 -10.1052 25 6 0.9563 4.3794 -10.4921 26 6 2.3568 3.7704 -10.3988 27 6 2.6166 3.3084 -8.9629 28 8 1.8124 1.8263 -7.2161 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.7089 1.1613 3.4844 36 1 3.1300 -0.7208 -1.2495 37 1 1.6766 -1.7488 -1.2493 38 1 0.9943 0.7582 -2.3564 39 1 0.8699 0.9327 -4.6810 40 1 2.8656 -0.3472 -6.2157 41 1 1.4127 -1.3754 -6.2154 42 1 2.2542 -0.7087 -8.5687 43 1 0.5107 -0.5513 -8.9415 44 1 -0.5686 2.1080 -8.3961 45 1 0.0813 3.7150 -7.9921 46 1 -1.0833 3.7617 -10.1769 47 1 -0.0105 2.4760 -10.7807 48 1 0.8840 5.2293 -9.8135 49 1 0.7729 4.7135 -11.5133 50 1 3.0980 4.5186 -10.6797 51 1 2.4278 2.9172 -11.0736 52 1 2.5555 4.1634 -8.2896 53 1 3.6103 2.8652 -8.8981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838542345.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:42 Heat of formation + Delta-G solvation = -160.972367 kcal Electronic energy + Delta-G solvation = -30621.952895 eV Core-core repulsion = 26492.010351 eV Total energy + Delta-G solvation = -4129.942544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07934 -40.98203 -38.39090 -37.95786 -36.29360 -35.52926 -34.97997 -32.88029 -32.05551 -31.62410 -29.59054 -27.56513 -27.54911 -27.12687 -25.76654 -23.96463 -23.11827 -22.73715 -22.04956 -20.62060 -20.58190 -19.50601 -18.14085 -17.80407 -17.68503 -17.42692 -16.71629 -16.59185 -16.44813 -16.22761 -15.55220 -15.41992 -15.23767 -14.85763 -14.74784 -14.69878 -14.54464 -14.18311 -14.00468 -13.84240 -13.63376 -13.35535 -13.22065 -13.14819 -13.08778 -13.03644 -12.67059 -12.60776 -12.55202 -12.23832 -12.14763 -12.12880 -11.73251 -11.50654 -11.47132 -11.42899 -11.34768 -11.17417 -11.13385 -10.69393 -10.43002 -10.40954 -10.32561 -9.67969 -8.01260 -6.16567 1.43265 1.45940 1.54181 1.74102 2.18803 2.37850 2.47027 2.85151 3.22283 3.26378 3.48999 3.65340 3.69624 3.72302 3.90294 4.00858 4.14867 4.25426 4.36324 4.42056 4.44479 4.48239 4.51952 4.55110 4.57823 4.64063 4.72136 4.74992 4.84974 4.95502 4.95980 5.01002 5.07363 5.07714 5.11967 5.20013 5.20592 5.21594 5.28234 5.34746 5.39003 5.44273 5.51592 5.63348 5.68430 5.68704 6.02833 6.04491 6.16348 6.23201 6.44948 6.87587 7.13433 7.50811 7.61604 8.97708 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024893 B = 0.001915 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.550181 B =14614.351520 C =15106.620568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.527 4.527 5 H 0.045 0.955 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.283 1.283 12 C 0.168 3.832 13 N -0.725 5.725 14 C 0.698 3.302 15 O -0.641 6.641 16 N -0.732 5.732 17 C 0.150 3.850 18 C 0.041 3.959 19 H 0.112 0.888 20 C 0.027 3.973 21 O -0.383 6.383 22 C 0.251 3.749 23 C -0.147 4.147 24 C -0.111 4.111 25 C -0.122 4.122 26 C -0.111 4.111 27 C -0.112 4.112 28 O -0.380 6.380 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.018 0.982 32 H 0.016 0.984 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.260 0.740 36 H 0.033 0.967 37 H 0.037 0.963 38 H 0.405 0.595 39 H 0.410 0.590 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.078 0.922 51 H 0.062 0.938 52 H 0.084 0.916 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 7.603 -27.978 29.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.565 4.565 5 H 0.063 0.937 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.773 3.227 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.209 1.209 12 C 0.043 3.957 13 N -0.381 5.381 14 C 0.397 3.603 15 O -0.523 6.523 16 N -0.389 5.389 17 C 0.025 3.975 18 C -0.017 4.017 19 H 0.129 0.871 20 C -0.050 4.050 21 O -0.304 6.304 22 C 0.175 3.825 23 C -0.185 4.185 24 C -0.149 4.149 25 C -0.159 4.159 26 C -0.148 4.148 27 C -0.150 4.150 28 O -0.301 6.301 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.242 0.758 39 H 0.246 0.754 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.130 0.870 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.096 0.904 51 H 0.081 0.919 52 H 0.103 0.897 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.037 6.947 -27.977 29.108 hybrid contribution -0.028 -0.074 1.452 1.454 sum -4.065 6.873 -26.525 27.701 Atomic orbital electron populations 1.21653 0.96977 0.98694 1.00348 1.18369 0.93375 0.92985 0.90239 1.21663 0.97851 0.97929 1.00318 1.21261 1.31635 1.12120 0.91503 0.93710 1.25465 0.95225 0.95631 1.00985 1.69910 1.37062 1.23239 1.23568 0.85750 0.78646 0.78472 0.79875 1.20451 1.20139 1.20869 1.21130 0.96628 0.94754 0.83186 1.45192 1.55800 1.33172 1.03890 1.16143 0.80151 0.82664 0.81293 1.90861 1.44945 1.29808 1.86725 1.44820 1.56768 1.33267 1.04025 1.21194 1.00028 0.97137 0.79126 1.24097 0.98626 0.83413 0.95545 0.87083 1.24042 1.03878 0.89350 0.87759 1.88869 1.91990 1.15115 1.34440 1.23547 0.96085 0.87437 0.75473 1.22253 0.94838 1.01854 0.99535 1.21434 0.99644 0.99120 0.94673 1.21592 0.93900 0.98068 1.02361 1.21459 0.97984 1.00870 0.94505 1.21586 0.97373 0.97230 0.98793 1.89512 1.75883 1.34028 1.30718 0.91918 0.94454 0.96245 0.96456 0.94565 0.91851 0.93050 0.94808 0.94427 0.75826 0.75396 0.92364 0.89093 0.89265 0.87005 0.90787 0.89878 0.90404 0.91826 0.91416 0.90609 0.90358 0.91924 0.89749 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 3 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 4 C -0.53 -28.03 8.01 25.60 0.21 -27.83 16 5 H 0.04 2.44 7.74 -2.91 -0.02 2.41 16 6 C 0.03 1.41 5.15 84.66 0.44 1.84 16 7 N -0.90 -48.02 9.35 21.45 0.20 -47.82 16 8 Si 0.95 42.85 29.54 68.60 2.03 44.87 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.17 7.29 4.50 86.38 0.39 7.68 16 13 N -0.73 -25.63 4.96 -478.53 -2.37 -28.00 16 14 C 0.70 24.53 8.57 179.05 1.53 26.06 16 15 O -0.64 -28.09 16.34 -3.99 -0.07 -28.16 16 16 N -0.73 -18.23 5.56 -478.56 -2.66 -20.89 16 17 C 0.15 3.16 5.30 86.38 0.46 3.62 16 18 C 0.04 0.64 2.97 31.10 0.09 0.73 16 19 H 0.11 1.31 7.41 -2.39 -0.02 1.29 16 20 C 0.03 0.37 7.64 72.49 0.55 0.92 16 21 O -0.38 -6.79 9.88 -125.99 -1.25 -8.03 16 22 C 0.25 4.23 1.05 30.37 0.03 4.26 16 23 C -0.15 -1.91 5.10 30.50 0.16 -1.75 16 24 C -0.11 -1.21 5.81 30.61 0.18 -1.03 16 25 C -0.12 -1.23 5.91 30.59 0.18 -1.05 16 26 C -0.11 -1.37 5.81 30.62 0.18 -1.19 16 27 C -0.11 -1.79 5.35 30.50 0.16 -1.62 16 28 O -0.38 -7.66 10.93 -125.99 -1.38 -9.03 16 29 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 30 H 0.04 1.37 6.86 -2.38 -0.02 1.36 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 34 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 35 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 36 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.41 12.35 6.18 -92.71 -0.57 11.77 16 39 H 0.41 8.09 8.49 -92.70 -0.79 7.30 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.09 1.22 7.85 -2.39 -0.02 1.20 16 43 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 0.87 7.09 -2.39 -0.02 0.85 16 45 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.06 0.79 7.80 -2.39 -0.02 0.77 16 48 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 49 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.06 0.89 7.80 -2.38 -0.02 0.87 16 52 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 53 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -65.57 404.21 -0.26 -65.83 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.46 Total: 27.73 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 5.69 Total: 3.51 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -4.83 Total: -96.72 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -2.69 Total: -45.23 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -65.57 -0.26 -65.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838542345.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.143 kcal (2) G-P(sol) polarization free energy of solvation -65.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds