Wall clock time and date at job start Sat Apr 11 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00035 * 2 1 4 4 O 1.20825 * 120.00082 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99756 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.46952 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.46826 * 180.02562 * 6 5 3 8 8 C 1.37101 * 120.00153 * 269.99853 * 7 6 5 9 9 H 1.08002 * 120.00152 * 344.13399 * 8 7 6 10 10 C 1.38948 * 120.00087 * 164.13332 * 8 7 6 11 11 N 1.31418 * 120.00180 * 352.53994 * 10 8 7 12 12 Si 1.86804 * 120.00180 * 172.54389 * 10 8 7 13 13 H 1.48502 * 109.46747 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47045 * 119.99736 * 12 10 8 15 15 H 1.48492 * 109.47332 * 239.99837 * 12 10 8 16 16 C 1.34774 * 119.99999 * 90.00377 * 7 6 5 17 17 O 1.21290 * 120.00192 * 307.87849 * 16 7 6 18 18 C 1.50704 * 120.00160 * 127.87717 * 16 7 6 19 19 H 1.08999 * 109.46926 * 56.53511 * 18 16 7 20 20 C 1.52997 * 109.47069 * 296.53705 * 18 16 7 21 21 C 1.53002 * 109.47075 * 68.57882 * 20 18 16 22 22 C 1.53006 * 109.47310 * 188.57866 * 20 18 16 23 23 N 1.46897 * 109.47319 * 176.53771 * 18 16 7 24 24 C 1.46843 * 110.99946 * 62.00761 * 23 18 16 25 25 C 1.53044 * 109.52591 * 174.16476 * 24 23 18 26 26 C 1.53118 * 109.27742 * 59.17573 * 25 24 23 27 27 C 1.53116 * 109.16076 * 302.34702 * 26 25 24 28 28 C 1.46850 * 110.99991 * 297.79830 * 23 18 16 29 29 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47227 * 300.00209 * 1 2 3 31 31 H 1.09001 * 109.46731 * 59.99966 * 1 2 3 32 32 H 1.09004 * 109.47260 * 60.00160 * 5 3 2 33 33 H 1.08997 * 109.47347 * 300.00362 * 5 3 2 34 34 H 1.09001 * 109.46563 * 60.00132 * 6 5 3 35 35 H 1.08997 * 109.47356 * 300.00314 * 6 5 3 36 36 H 0.96999 * 120.00309 * 185.24152 * 11 10 8 37 37 H 1.09002 * 109.47393 * 308.57764 * 20 18 16 38 38 H 1.09001 * 109.46861 * 292.93563 * 21 20 18 39 39 H 1.09004 * 109.46885 * 172.93540 * 21 20 18 40 40 H 1.09003 * 109.47258 * 52.93394 * 21 20 18 41 41 H 1.09002 * 109.46803 * 305.10287 * 22 20 18 42 42 H 1.08998 * 109.46573 * 65.10196 * 22 20 18 43 43 H 1.09003 * 109.47054 * 185.10632 * 22 20 18 44 44 H 1.09008 * 109.46466 * 294.17639 * 24 23 18 45 45 H 1.08995 * 109.46387 * 54.14511 * 24 23 18 46 46 H 1.09004 * 109.49446 * 299.23707 * 25 24 23 47 47 H 1.09000 * 109.53908 * 179.14396 * 25 24 23 48 48 H 1.08997 * 109.51952 * 182.44828 * 26 25 24 49 49 H 1.08997 * 109.57504 * 62.28631 * 26 25 24 50 50 H 1.08995 * 109.50695 * 297.71576 * 27 26 25 51 51 H 1.09003 * 109.53504 * 177.61689 * 27 26 25 52 52 H 1.08998 * 109.46076 * 305.85529 * 28 23 18 53 53 H 1.09003 * 109.46179 * 65.82995 * 28 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4631 2.8186 0.0011 8 6 6.1478 2.8540 1.1883 9 1 5.6261 3.0825 2.1060 10 6 7.5129 2.5960 1.2111 11 7 8.1204 2.1756 0.1242 12 14 8.4848 2.8467 2.7866 13 1 7.5745 3.3223 3.8592 14 1 9.1038 1.5605 3.1963 15 1 9.5485 3.8569 2.5567 16 6 6.1360 2.8543 -1.1661 17 8 5.9244 2.0134 -2.0142 18 6 7.1514 3.9392 -1.4177 19 1 7.9027 3.9237 -0.6281 20 6 6.4518 5.2998 -1.4294 21 6 5.9605 5.6327 -0.0191 22 6 7.4359 6.3754 -1.8938 23 7 7.8003 3.7111 -2.7157 24 6 6.8235 3.7726 -3.8104 25 6 7.5526 3.6764 -5.1525 26 6 8.3313 2.3593 -5.2116 27 6 9.3073 2.2992 -4.0333 28 6 8.5273 2.4352 -2.7237 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.9564 0.7805 -0.8892 33 1 3.9557 0.7808 0.8908 34 1 3.6101 3.2358 0.8911 35 1 3.6108 3.2364 -0.8888 36 1 9.0563 1.9229 0.1586 37 1 5.6023 5.2657 -2.1115 38 1 5.1682 4.9393 0.2627 39 1 5.5751 6.6522 0.0001 40 1 6.7883 5.5439 0.6845 41 1 8.3266 6.3484 -1.2659 42 1 7.7162 6.1881 -2.9303 43 1 6.9660 7.3558 -1.8158 44 1 6.1219 2.9435 -3.7181 45 1 6.2797 4.7158 -3.7593 46 1 8.2444 4.5129 -5.2515 47 1 6.8265 3.7067 -5.9648 48 1 8.8869 2.3063 -6.1478 49 1 7.6366 1.5214 -5.1523 50 1 10.0267 3.1139 -4.1147 51 1 9.8348 1.3454 -4.0453 52 1 9.2208 2.4071 -1.8833 53 1 7.8177 1.6124 -2.6365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341150.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:28 Heat of formation + Delta-G solvation = -109.766729 kcal Electronic energy + Delta-G solvation = -33498.271253 eV Core-core repulsion = 29370.549152 eV Total energy + Delta-G solvation = -4127.722101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67128 -41.29447 -38.92011 -37.63058 -36.71528 -36.25544 -34.35576 -32.90919 -31.84367 -31.45928 -28.75552 -27.96297 -27.55528 -26.68025 -24.96199 -23.97212 -23.36754 -21.96228 -21.37099 -20.67285 -20.51623 -18.80495 -18.31054 -17.64694 -17.60041 -17.22326 -16.76055 -16.63779 -16.04935 -15.67038 -15.60009 -15.23683 -15.03982 -14.75572 -14.64972 -14.35068 -14.25172 -13.83336 -13.64377 -13.59513 -13.42534 -13.26609 -13.19624 -12.99264 -12.86040 -12.81518 -12.67088 -12.58674 -12.33563 -12.18795 -11.97998 -11.89727 -11.81318 -11.72441 -11.62532 -11.59221 -11.55276 -11.44514 -11.05990 -10.81910 -10.56611 -10.49290 -9.26348 -8.54468 -8.13963 -5.67739 1.10434 1.48284 1.54259 1.62619 1.71976 2.14642 2.43133 3.17561 3.23366 3.37786 3.84614 4.02767 4.06859 4.10543 4.19092 4.20877 4.24490 4.28773 4.30710 4.32859 4.51203 4.55621 4.58517 4.66763 4.71998 4.77027 4.82566 4.90600 4.94009 5.00170 5.01530 5.08028 5.14095 5.16344 5.18251 5.21862 5.27986 5.29990 5.31820 5.36367 5.45436 5.49647 5.57664 5.62000 5.70194 5.75898 5.82617 5.99966 6.47844 6.63457 6.66603 6.99765 7.27455 7.87810 8.04795 8.90642 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.004992 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.241581 B = 5607.083227 C = 6970.622748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.369 6.369 3 C 0.475 3.525 4 O -0.534 6.534 5 C -0.120 4.120 6 C 0.151 3.849 7 N -0.535 5.535 8 C -0.276 4.276 9 H 0.096 0.904 10 C -0.032 4.032 11 N -0.895 5.895 12 Si 0.979 3.021 13 H -0.263 1.263 14 H -0.294 1.294 15 H -0.284 1.284 16 C 0.554 3.446 17 O -0.598 6.598 18 C 0.081 3.919 19 H 0.119 0.881 20 C -0.081 4.081 21 C -0.134 4.134 22 C -0.118 4.118 23 N -0.503 5.503 24 C 0.034 3.966 25 C -0.104 4.104 26 C -0.112 4.112 27 C -0.112 4.112 28 C 0.072 3.928 29 H 0.132 0.868 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.267 0.733 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.038 0.962 50 H 0.068 0.932 51 H 0.060 0.940 52 H 0.059 0.941 53 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 2.255 -3.150 5.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.319 3.681 4 O -0.424 6.424 5 C -0.160 4.160 6 C 0.026 3.974 7 N -0.261 5.261 8 C -0.404 4.404 9 H 0.114 0.886 10 C -0.229 4.229 11 N -0.540 5.540 12 Si 0.806 3.194 13 H -0.187 1.187 14 H -0.221 1.221 15 H -0.210 1.210 16 C 0.348 3.652 17 O -0.480 6.480 18 C -0.032 4.032 19 H 0.136 0.864 20 C -0.101 4.101 21 C -0.192 4.192 22 C -0.175 4.175 23 N -0.226 5.226 24 C -0.094 4.094 25 C -0.142 4.142 26 C -0.149 4.149 27 C -0.150 4.150 28 C -0.057 4.057 29 H 0.150 0.850 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.057 0.943 50 H 0.086 0.914 51 H 0.079 0.921 52 H 0.077 0.923 53 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.080 2.511 -3.712 6.061 hybrid contribution -0.293 -1.166 1.107 1.634 sum -4.374 1.345 -2.606 5.266 Atomic orbital electron populations 1.23574 0.74703 1.05731 1.02644 1.86541 1.25297 1.32991 1.83726 1.23955 0.92051 0.81217 0.70871 1.90605 1.67758 1.36999 1.47036 1.21966 0.86231 1.02186 1.05579 1.20953 0.82435 0.92563 1.01401 1.43423 1.03112 1.74105 1.05476 1.19768 0.91195 1.43423 0.85967 0.88624 1.25672 0.98148 0.98677 1.00423 1.69796 1.12141 1.44076 1.27967 0.85015 0.78467 0.77025 0.78900 1.18660 1.22136 1.21041 1.21155 0.79430 0.85079 0.79559 1.90341 1.67705 1.40118 1.49884 1.22453 0.95914 0.91681 0.93115 0.86378 1.21056 0.97343 0.94171 0.97485 1.21843 1.01584 1.00453 0.95279 1.21561 0.98035 0.96602 1.01342 1.62447 1.25716 1.32442 1.01996 1.22318 0.94799 1.00153 0.92093 1.21503 0.99210 0.97943 0.95557 1.21487 0.97877 0.97234 0.98347 1.21605 0.97861 1.01163 0.94346 1.21874 0.96421 0.90559 0.96798 0.84986 0.91588 0.92025 0.89220 0.87379 0.90154 0.93360 0.92145 0.93806 0.92287 0.92341 0.93546 0.93723 0.92270 0.92099 0.95175 0.91904 0.90989 0.91069 0.90257 0.94348 0.91358 0.92090 0.92283 0.96036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.37 -11.10 10.57 -51.41 -0.54 -11.65 16 3 C 0.47 16.45 7.96 71.24 0.57 17.01 16 4 O -0.53 -20.07 15.73 21.97 0.35 -19.72 16 5 C -0.12 -4.54 6.08 29.85 0.18 -4.36 16 6 C 0.15 6.13 3.85 86.38 0.33 6.46 16 7 N -0.53 -24.28 1.19 -635.54 -0.75 -25.04 16 8 C -0.28 -12.67 7.72 84.04 0.65 -12.02 16 9 H 0.10 4.18 7.82 -2.91 -0.02 4.16 16 10 C -0.03 -1.47 4.42 84.93 0.38 -1.10 16 11 N -0.90 -44.65 6.95 21.66 0.15 -44.50 16 12 Si 0.98 38.93 29.56 68.60 2.03 40.95 16 13 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 14 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 16 C 0.55 26.55 3.52 87.66 0.31 26.86 16 17 O -0.60 -31.70 11.66 -3.06 -0.04 -31.73 16 18 C 0.08 3.49 1.12 44.17 0.05 3.54 16 19 H 0.12 5.76 4.93 -2.39 -0.01 5.75 16 20 C -0.08 -3.02 1.88 -10.79 -0.02 -3.04 16 21 C -0.13 -4.80 7.85 71.98 0.57 -4.24 16 22 C -0.12 -3.74 8.72 71.98 0.63 -3.11 16 23 N -0.50 -20.49 3.77 -875.50 -3.30 -23.79 16 24 C 0.03 1.31 4.36 86.33 0.38 1.69 16 25 C -0.10 -3.18 6.09 30.65 0.19 -2.99 16 26 C -0.11 -3.43 6.00 30.67 0.18 -3.24 16 27 C -0.11 -3.77 6.09 30.65 0.19 -3.59 16 28 C 0.07 3.06 4.30 86.33 0.37 3.43 16 29 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.32 8.13 -2.39 -0.02 1.30 16 31 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 32 H 0.09 3.78 7.56 -2.38 -0.02 3.77 16 33 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 34 H 0.08 3.05 7.98 -2.39 -0.02 3.03 16 35 H 0.05 2.01 7.99 -2.39 -0.02 1.99 16 36 H 0.27 13.13 7.80 -92.71 -0.72 12.41 16 37 H 0.04 1.67 6.72 -2.39 -0.02 1.65 16 38 H 0.06 2.29 4.85 -2.39 -0.01 2.28 16 39 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 40 H 0.05 1.75 7.97 -2.39 -0.02 1.73 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.87 6.83 -2.39 -0.02 1.85 16 43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.03 1.37 5.55 -2.38 -0.01 1.36 16 45 H 0.06 2.29 5.66 -2.39 -0.01 2.27 16 46 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.06 2.71 6.34 -2.39 -0.02 2.69 16 53 H 0.02 1.10 5.81 -2.39 -0.01 1.08 16 Total: -1.00 -58.33 390.90 4.97 -53.37 By element: Atomic # 1 Polarization: 38.12 SS G_CDS: 0.94 Total: 39.05 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 6.14 Total: 23.05 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -3.90 Total: -93.32 kcal Atomic # 8 Polarization: -62.87 SS G_CDS: -0.23 Total: -63.10 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.95 kcal Total: -58.33 4.97 -53.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341150.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.399 kcal (2) G-P(sol) polarization free energy of solvation -58.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds