Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46721 * 2 1 4 4 C 1.50701 * 109.47285 * 240.00088 * 2 1 3 5 5 H 1.08001 * 119.99758 * 239.99464 * 4 2 1 6 6 C 1.37875 * 119.99947 * 60.00186 * 4 2 1 7 7 N 1.31511 * 119.99968 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47131 * 59.99411 * 8 6 4 10 10 H 1.48498 * 109.47075 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46979 * 299.99719 * 8 6 4 12 12 C 1.53004 * 109.47201 * 119.99573 * 2 1 3 13 13 N 1.46494 * 109.47041 * 300.00418 * 12 2 1 14 14 C 1.34780 * 119.99486 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00133 * 355.01327 * 14 13 12 16 16 N 1.34777 * 119.99955 * 175.01807 * 14 13 12 17 17 C 1.47161 * 120.98001 * 5.73132 * 16 14 13 18 18 C 1.53294 * 108.37997 * 129.48981 * 17 16 14 19 19 O 1.42956 * 109.23051 * 52.30242 * 18 17 16 20 20 C 1.42967 * 114.16362 * 297.42270 * 19 18 17 21 21 C 1.47153 * 120.98582 * 185.75545 * 16 14 13 22 22 H 1.08996 * 109.68113 * 110.74722 * 21 16 14 23 23 C 1.53003 * 109.67789 * 350.23456 * 21 16 14 24 24 C 1.53000 * 109.46984 * 180.49801 * 23 21 16 25 25 H 1.09000 * 110.55322 * 309.15823 * 24 23 21 26 26 C 1.54995 * 110.61655 * 186.27548 * 24 23 21 27 27 C 1.54817 * 102.09178 * 204.47914 * 26 24 23 28 28 C 1.54103 * 104.18647 * 20.87824 * 27 26 24 29 29 O 1.43747 * 107.42074 * 1.95884 * 28 27 26 30 30 H 1.08999 * 109.47142 * 299.99844 * 1 2 3 31 31 H 1.09001 * 109.47077 * 60.00493 * 1 2 3 32 32 H 1.08997 * 109.46701 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46784 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47178 * 299.99491 * 3 2 1 35 35 H 1.08999 * 109.47185 * 60.00183 * 3 2 1 36 36 H 0.97007 * 120.00238 * 180.02562 * 7 6 4 37 37 H 1.09001 * 109.46778 * 180.02562 * 12 2 1 38 38 H 1.08998 * 109.46436 * 60.00476 * 12 2 1 39 39 H 0.96993 * 120.00269 * 0.02562 * 13 12 2 40 40 H 1.08994 * 109.67855 * 249.20741 * 17 16 14 41 41 H 1.08997 * 109.67984 * 9.76739 * 17 16 14 42 42 H 1.09001 * 109.51289 * 172.22614 * 18 17 16 43 43 H 1.09001 * 109.51604 * 292.37289 * 18 17 16 44 44 H 1.09000 * 109.50644 * 302.64964 * 20 19 18 45 45 H 1.09004 * 109.51068 * 182.50101 * 20 19 18 46 46 H 1.09002 * 109.47281 * 60.50297 * 23 21 16 47 47 H 1.08994 * 109.47315 * 300.50270 * 23 21 16 48 48 H 1.08999 * 110.90572 * 86.28281 * 26 24 23 49 49 H 1.08999 * 110.94000 * 322.68642 * 26 24 23 50 50 H 1.09001 * 110.48611 * 262.21004 * 27 26 24 51 51 H 1.08992 * 110.48791 * 139.55813 * 27 26 24 52 52 H 1.09008 * 109.87404 * 121.45258 * 28 27 26 53 53 H 1.08995 * 109.88177 * 242.45538 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8261 -0.4205 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.4987 -1.5300 3.7827 16 7 1.5127 0.1992 4.7682 17 6 0.6541 1.3899 4.6644 18 6 -0.5064 1.2367 5.6542 19 8 0.0171 0.9426 6.9516 20 6 0.7380 -0.2897 7.0262 21 6 1.9622 -0.2148 6.1068 22 1 2.6716 0.5146 6.4977 23 6 2.6294 -1.5892 6.0240 24 6 3.0837 -2.0205 7.4199 25 1 3.6677 -1.2311 7.8931 26 6 3.9017 -3.3349 7.3458 27 6 3.7088 -3.9175 8.7671 28 6 2.4374 -3.2221 9.2910 29 8 1.9463 -2.3740 8.2394 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 0.7082 1.1610 -3.4844 37 1 3.1301 -0.7207 1.2495 38 1 1.6767 -1.7488 1.2492 39 1 0.9937 0.7578 2.3564 40 1 1.2313 2.2811 4.9105 41 1 0.2632 1.4733 3.6504 42 1 -1.0763 2.1651 5.6935 43 1 -1.1559 0.4234 5.3307 44 1 0.0929 -1.1086 6.7077 45 1 1.0633 -0.4596 8.0526 46 1 3.4933 -1.5345 5.3616 47 1 1.9172 -2.3159 5.6330 48 1 4.9537 -3.1278 7.1497 49 1 3.4921 -4.0066 6.5913 50 1 4.5638 -3.6748 9.3981 51 1 3.5619 -4.9965 8.7205 52 1 1.6853 -3.9686 9.5468 53 1 2.6778 -2.6225 10.1689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895301180.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -121.391875 kcal Electronic energy + Delta-G solvation = -31877.324680 eV Core-core repulsion = 27749.098474 eV Total energy + Delta-G solvation = -4128.226205 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90227 -40.29654 -39.51276 -38.20134 -35.82361 -35.53672 -34.07133 -33.03155 -32.43512 -30.83814 -28.80837 -27.57252 -27.42367 -26.85105 -26.47853 -24.25288 -23.18896 -22.39473 -22.01894 -20.89748 -20.55737 -19.09851 -17.86035 -17.69460 -17.50972 -17.02267 -16.89447 -16.67821 -16.60433 -16.14149 -15.92695 -15.86549 -15.37679 -15.10271 -14.96832 -14.64290 -14.49464 -14.18579 -14.01750 -13.75934 -13.43291 -13.26212 -13.19810 -13.06993 -12.72889 -12.66378 -12.61904 -12.55244 -12.30339 -12.25898 -12.17054 -12.08134 -11.93868 -11.57620 -11.52207 -11.48410 -11.20905 -11.20137 -10.72554 -10.65634 -10.39433 -10.27959 -9.96158 -9.38628 -8.02113 -6.17733 1.44382 1.45341 1.51251 1.57922 2.14540 2.45637 2.75924 2.94112 3.05587 3.21617 3.65457 3.69012 3.78566 3.95075 4.02994 4.05769 4.07722 4.17289 4.23824 4.32959 4.43130 4.46454 4.53608 4.54203 4.60119 4.70383 4.70460 4.77799 4.85953 4.87696 4.93578 4.98347 4.99001 5.04388 5.07627 5.10267 5.14324 5.19511 5.23296 5.31224 5.38617 5.58311 5.66007 5.66874 5.67355 5.90444 6.01542 6.12378 6.14680 6.21666 6.43715 6.86294 6.99567 7.49939 7.59601 8.96774 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016272 B = 0.002718 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.373467 B =10300.216613 C =11653.731708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.054 3.946 3 C -0.119 4.119 4 C -0.530 4.530 5 H 0.045 0.955 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.169 3.831 13 N -0.728 5.728 14 C 0.699 3.301 15 O -0.617 6.617 16 N -0.633 5.633 17 C 0.072 3.928 18 C 0.048 3.952 19 O -0.391 6.391 20 C 0.067 3.933 21 C 0.133 3.867 22 H 0.087 0.913 23 C -0.086 4.086 24 C 0.071 3.929 25 H 0.085 0.915 26 C -0.149 4.149 27 C -0.150 4.150 28 C 0.039 3.961 29 O -0.392 6.392 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.016 0.984 33 H 0.018 0.982 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.260 0.740 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.401 0.599 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.135 0.865 43 H 0.049 0.951 44 H 0.039 0.961 45 H 0.125 0.875 46 H 0.089 0.911 47 H 0.052 0.948 48 H 0.088 0.912 49 H 0.059 0.941 50 H 0.091 0.909 51 H 0.080 0.920 52 H 0.086 0.914 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 -0.066 23.507 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.045 3.955 13 N -0.386 5.386 14 C 0.401 3.599 15 O -0.499 6.499 16 N -0.372 5.372 17 C -0.051 4.051 18 C -0.030 4.030 19 O -0.309 6.309 20 C -0.010 4.010 21 C 0.029 3.971 22 H 0.104 0.896 23 C -0.124 4.124 24 C 0.013 3.987 25 H 0.103 0.897 26 C -0.187 4.187 27 C -0.187 4.187 28 C -0.037 4.037 29 O -0.313 6.313 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.239 0.761 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.153 0.847 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.143 0.857 46 H 0.107 0.893 47 H 0.071 0.929 48 H 0.106 0.894 49 H 0.078 0.922 50 H 0.109 0.891 51 H 0.099 0.901 52 H 0.104 0.896 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.869 -0.494 23.535 23.556 hybrid contribution 0.290 -0.579 -1.619 1.744 sum 1.159 -1.073 21.916 21.973 Atomic orbital electron populations 1.21663 0.97273 0.98554 1.00235 1.18337 0.93116 0.93035 0.90231 1.21656 0.97934 0.97830 1.00251 1.21243 1.31811 1.12224 0.91549 0.93698 1.25436 0.95123 0.95579 1.00914 1.69894 1.36903 1.23285 1.23684 0.85832 0.78657 0.78802 0.79602 1.20331 1.20806 1.20214 1.21108 0.96628 0.94630 0.83136 1.45485 1.55772 1.33268 1.04044 1.16148 0.79797 0.83037 0.80954 1.90874 1.48248 1.25290 1.85480 1.47425 1.54184 1.30417 1.05149 1.22563 0.92925 0.87964 1.01612 1.23107 0.94171 1.03162 0.82536 1.87938 1.72006 1.40443 1.30511 1.23101 0.91294 0.85353 1.01283 1.21908 0.96884 0.97285 0.81016 0.89553 1.21909 1.01942 0.94581 0.93924 1.23433 0.87113 0.97110 0.91035 0.89738 1.23083 1.01272 0.96524 0.97819 1.22922 0.98731 1.01403 0.95665 1.23294 0.96250 0.93552 0.90643 1.88917 1.32059 1.68108 1.42168 0.94777 0.91765 0.96464 0.96289 0.91829 0.94704 0.92995 0.94515 0.94779 0.76067 0.88921 0.88815 0.84713 0.93291 0.94219 0.85718 0.89305 0.92915 0.89376 0.92171 0.89061 0.90095 0.89618 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.08 71.98 0.58 -4.73 16 2 C 0.05 2.47 0.50 -52.92 -0.03 2.44 16 3 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 4 C -0.53 -28.01 8.01 25.60 0.21 -27.80 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.54 5.15 84.65 0.44 1.98 16 7 N -0.90 -47.71 9.35 21.45 0.20 -47.51 16 8 Si 0.94 42.50 29.54 68.60 2.03 44.53 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.17 7.28 4.51 86.38 0.39 7.67 16 13 N -0.73 -25.88 4.87 -478.53 -2.33 -28.21 16 14 C 0.70 24.69 8.23 179.05 1.47 26.16 16 15 O -0.62 -25.39 11.90 -3.99 -0.05 -25.44 16 16 N -0.63 -17.51 3.02 -811.38 -2.45 -19.96 16 17 C 0.07 1.50 6.57 86.35 0.57 2.07 16 18 C 0.05 0.90 6.98 72.08 0.50 1.40 16 19 O -0.39 -8.88 10.74 -148.98 -1.60 -10.48 16 20 C 0.07 1.56 5.17 72.08 0.37 1.93 16 21 C 0.13 3.30 3.20 44.96 0.14 3.44 16 22 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 23 C -0.09 -2.33 3.02 30.60 0.09 -2.24 16 24 C 0.07 1.45 3.08 31.28 0.10 1.55 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 26 C -0.15 -2.78 6.59 31.90 0.21 -2.57 16 27 C -0.15 -2.02 7.01 31.59 0.22 -1.80 16 28 C 0.04 0.58 7.69 72.36 0.56 1.14 16 29 O -0.39 -8.27 8.47 -148.98 -1.26 -9.53 16 30 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 31 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 35 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 36 H 0.26 13.35 8.31 -92.70 -0.77 12.58 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.40 12.53 3.73 -92.71 -0.35 12.19 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.09 1.86 5.79 -2.39 -0.01 1.84 16 42 H 0.14 1.72 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 45 H 0.13 2.67 6.23 -2.38 -0.01 2.66 16 46 H 0.09 2.82 6.31 -2.39 -0.02 2.81 16 47 H 0.05 1.77 7.24 -2.39 -0.02 1.75 16 48 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.06 1.36 8.06 -2.39 -0.02 1.34 16 50 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 52 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 53 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -62.15 392.47 1.49 -60.65 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.55 Total: 29.97 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 6.40 Total: 5.97 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -4.58 Total: -95.67 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -2.91 Total: -45.45 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -62.15 1.49 -60.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895301180.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.737 kcal (2) G-P(sol) polarization free energy of solvation -62.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds