Wall clock time and date at job start Sat Apr 11 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47471 * 2 1 4 4 C 1.50705 * 109.46704 * 239.99991 * 2 1 3 5 5 H 1.08005 * 119.99583 * 240.00103 * 4 2 1 6 6 C 1.37869 * 120.00046 * 60.00464 * 4 2 1 7 7 N 1.31511 * 120.00288 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00032 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47109 * 59.99738 * 8 6 4 10 10 H 1.48496 * 109.47348 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47052 * 299.99688 * 8 6 4 12 12 C 1.53002 * 109.46974 * 120.00293 * 2 1 3 13 13 N 1.46500 * 109.46973 * 299.99851 * 12 2 1 14 14 C 1.34770 * 120.00015 * 180.02562 * 13 12 2 15 15 O 1.21594 * 120.00084 * 355.03452 * 14 13 12 16 16 N 1.34778 * 120.00264 * 175.03039 * 14 13 12 17 17 C 1.47150 * 120.97820 * 5.55726 * 16 14 13 18 18 C 1.53302 * 108.38155 * 129.44425 * 17 16 14 19 19 O 1.42962 * 109.22439 * 52.30119 * 18 17 16 20 20 C 1.42968 * 114.16608 * 297.42126 * 19 18 17 21 21 C 1.47151 * 120.98289 * 185.53630 * 16 14 13 22 22 H 1.09000 * 109.68479 * 110.79715 * 21 16 14 23 23 C 1.53001 * 109.68330 * 350.28015 * 21 16 14 24 24 C 1.52995 * 109.47395 * 180.62006 * 23 21 16 25 25 H 1.09004 * 110.35809 * 56.89510 * 24 23 21 26 26 C 1.54941 * 110.31379 * 179.04390 * 24 23 21 27 27 C 1.55303 * 100.94379 * 155.35676 * 26 24 23 28 28 C 1.54374 * 102.25512 * 325.86518 * 27 26 24 29 29 O 1.43239 * 107.58730 * 21.35925 * 28 27 26 30 30 H 1.08999 * 109.47270 * 300.00338 * 1 2 3 31 31 H 1.09007 * 109.46960 * 59.99902 * 1 2 3 32 32 H 1.08996 * 109.47581 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47236 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47182 * 300.00162 * 3 2 1 35 35 H 1.09005 * 109.46933 * 59.99966 * 3 2 1 36 36 H 0.97002 * 120.00561 * 179.97438 * 7 6 4 37 37 H 1.09002 * 109.46715 * 179.97438 * 12 2 1 38 38 H 1.09003 * 109.47270 * 59.99840 * 12 2 1 39 39 H 0.96997 * 119.99647 * 359.97438 * 13 12 2 40 40 H 1.08994 * 109.68043 * 249.16334 * 17 16 14 41 41 H 1.08994 * 109.68444 * 9.71887 * 17 16 14 42 42 H 1.09004 * 109.50988 * 172.22512 * 18 17 16 43 43 H 1.08996 * 109.50762 * 292.37485 * 18 17 16 44 44 H 1.09001 * 109.50673 * 302.65456 * 20 19 18 45 45 H 1.08998 * 109.51009 * 182.50842 * 20 19 18 46 46 H 1.09005 * 109.47288 * 60.61791 * 23 21 16 47 47 H 1.09005 * 109.47234 * 300.61511 * 23 21 16 48 48 H 1.08997 * 111.12456 * 273.27453 * 26 24 23 49 49 H 1.08996 * 111.12622 * 37.43790 * 26 24 23 50 50 H 1.09001 * 110.84991 * 207.67534 * 27 26 24 51 51 H 1.09002 * 110.84799 * 84.05966 * 27 26 24 52 52 H 1.09000 * 109.83199 * 261.84297 * 28 27 26 53 53 H 1.09006 * 109.90613 * 140.90990 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8278 -0.4192 -5.2205 11 1 3.8074 -1.1191 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6694 15 8 2.5005 -1.5290 3.7827 16 7 1.5132 0.1995 4.7681 17 6 0.6568 1.3916 4.6640 18 6 -0.5059 1.2393 5.6515 19 8 0.0147 0.9429 6.9495 20 6 0.7335 -0.2907 7.0242 21 6 1.9596 -0.2167 6.1070 22 1 2.6694 0.5112 6.5002 23 6 2.6248 -1.5921 6.0241 24 6 3.0731 -2.0269 7.4207 25 1 2.2256 -2.0333 8.1062 26 6 3.7286 -3.4296 7.3628 27 6 4.6369 -3.3828 8.6217 28 6 5.0634 -1.8997 8.6631 29 8 4.1024 -1.1518 7.9089 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 0.7088 1.1614 -3.4844 37 1 3.1300 -0.7217 1.2490 38 1 1.6766 -1.7490 1.2492 39 1 0.9943 0.7581 2.3563 40 1 1.2349 2.2817 4.9121 41 1 0.2679 1.4769 3.6494 42 1 -1.0744 2.1685 5.6907 43 1 -1.1560 0.4273 5.3258 44 1 0.0878 -1.1082 6.7036 45 1 1.0566 -0.4622 8.0510 46 1 3.4912 -1.5375 5.3649 47 1 1.9127 -2.3168 5.6291 48 1 2.9797 -4.2170 7.4478 49 1 4.3206 -3.5494 6.4556 50 1 5.5035 -4.0324 8.4992 51 1 4.0741 -3.6497 9.5162 52 1 6.0519 -1.7867 8.2179 53 1 5.0798 -1.5469 9.6943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895301182.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:56 Heat of formation + Delta-G solvation = -122.314122 kcal Electronic energy + Delta-G solvation = -31826.542611 eV Core-core repulsion = 27698.276414 eV Total energy + Delta-G solvation = -4128.266197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.90868 -40.32487 -39.55399 -38.20252 -35.82995 -35.56202 -34.13234 -33.02342 -32.44610 -30.85597 -28.83572 -27.57605 -27.43103 -26.85195 -26.49712 -24.25890 -23.33336 -22.52086 -21.83957 -20.89847 -20.54377 -19.00679 -18.01494 -17.80706 -17.54337 -17.08029 -16.88166 -16.72256 -16.60270 -16.12126 -15.95739 -15.67402 -15.41893 -15.20184 -14.90581 -14.66776 -14.36861 -14.16538 -14.07183 -13.84870 -13.54497 -13.28976 -13.20166 -13.06457 -12.75234 -12.67667 -12.62271 -12.59839 -12.31412 -12.26419 -12.19693 -12.10570 -11.92444 -11.71249 -11.51551 -11.49072 -11.21383 -11.20606 -10.74366 -10.69903 -10.39699 -10.13961 -9.93258 -9.38862 -8.02354 -6.18081 1.44269 1.45177 1.51120 1.57780 2.14831 2.45452 2.80151 2.89522 2.96709 3.21339 3.61326 3.68220 3.71519 3.96697 4.00265 4.04817 4.09507 4.14849 4.23037 4.29114 4.41077 4.42937 4.49240 4.53098 4.60938 4.64243 4.70120 4.80062 4.81139 4.83356 4.88155 4.93446 4.98081 5.01721 5.03968 5.08979 5.16550 5.19117 5.24805 5.31845 5.38103 5.58427 5.66249 5.66528 5.67098 5.90359 6.07558 6.14295 6.14630 6.21268 6.43389 6.85881 6.99661 7.49643 7.59728 8.96550 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.002779 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.926234 B =10073.842363 C =11497.017777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.054 3.946 3 C -0.119 4.119 4 C -0.530 4.530 5 H 0.045 0.955 6 C 0.030 3.970 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.169 3.831 13 N -0.729 5.729 14 C 0.698 3.302 15 O -0.617 6.617 16 N -0.633 5.633 17 C 0.070 3.930 18 C 0.049 3.951 19 O -0.388 6.388 20 C 0.057 3.943 21 C 0.135 3.865 22 H 0.074 0.926 23 C -0.090 4.090 24 C 0.073 3.927 25 H 0.087 0.913 26 C -0.152 4.152 27 C -0.147 4.147 28 C 0.042 3.958 29 O -0.403 6.403 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.018 0.982 33 H 0.016 0.984 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.261 0.739 37 H 0.033 0.967 38 H 0.036 0.964 39 H 0.401 0.599 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.135 0.865 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.122 0.878 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.062 0.938 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.063 0.937 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 -1.381 23.460 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.177 4.177 4 C -0.569 4.569 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.045 3.955 13 N -0.386 5.386 14 C 0.400 3.600 15 O -0.499 6.499 16 N -0.372 5.372 17 C -0.052 4.052 18 C -0.028 4.028 19 O -0.306 6.306 20 C -0.020 4.020 21 C 0.032 3.968 22 H 0.092 0.908 23 C -0.128 4.128 24 C 0.015 3.985 25 H 0.105 0.895 26 C -0.190 4.190 27 C -0.185 4.185 28 C -0.034 4.034 29 O -0.323 6.323 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.239 0.761 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.153 0.847 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.140 0.860 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.114 0.886 49 H 0.080 0.920 50 H 0.110 0.890 51 H 0.112 0.888 52 H 0.081 0.919 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.501 -1.652 23.483 23.546 hybrid contribution 0.390 -0.482 -1.666 1.777 sum -0.111 -2.133 21.817 21.921 Atomic orbital electron populations 1.21655 0.97097 0.98647 1.00255 1.18333 0.93245 0.92912 0.90204 1.21663 0.97840 0.97970 1.00241 1.21245 1.31835 1.12241 0.91568 0.93718 1.25434 0.95104 0.95579 1.00910 1.69891 1.36915 1.23258 1.23698 0.85829 0.78612 0.78852 0.79588 1.20214 1.20782 1.20321 1.21105 0.96477 0.94752 0.83167 1.45486 1.55800 1.33254 1.04044 1.16157 0.79710 0.83139 0.80954 1.90885 1.47993 1.25509 1.85512 1.47430 1.54300 1.30274 1.05190 1.22567 0.93025 0.87824 1.01827 1.23120 0.93955 1.03471 0.82231 1.87946 1.71979 1.40184 1.30515 1.23156 0.91389 0.86555 1.00918 1.21787 0.96542 0.97517 0.80957 0.90803 1.21982 1.01377 0.94893 0.94504 1.23324 0.91215 0.89217 0.94726 0.89487 1.23266 0.99826 0.97119 0.98747 1.23111 1.00695 0.96257 0.98403 1.23274 0.92322 0.91429 0.96406 1.88401 1.37645 1.34799 1.71499 0.94721 0.91785 0.96303 0.96472 0.91764 0.94770 0.92982 0.94862 0.94535 0.76077 0.89585 0.88710 0.84732 0.92500 0.92444 0.86050 0.91505 0.90914 0.88578 0.91954 0.89038 0.88825 0.91880 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 2 C 0.05 2.49 0.50 -52.93 -0.03 2.47 16 3 C -0.12 -5.34 8.08 71.98 0.58 -4.75 16 4 C -0.53 -28.14 8.01 25.60 0.21 -27.94 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.56 5.15 84.65 0.44 1.99 16 7 N -0.90 -47.77 9.35 21.44 0.20 -47.57 16 8 Si 0.94 42.57 29.54 68.60 2.03 44.60 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.17 7.34 4.51 86.38 0.39 7.72 16 13 N -0.73 -26.11 4.87 -478.53 -2.33 -28.44 16 14 C 0.70 24.96 8.23 179.06 1.47 26.44 16 15 O -0.62 -25.69 11.90 -4.01 -0.05 -25.73 16 16 N -0.63 -17.76 3.02 -811.39 -2.45 -20.21 16 17 C 0.07 1.48 6.57 86.36 0.57 2.04 16 18 C 0.05 0.87 6.99 72.08 0.50 1.37 16 19 O -0.39 -8.18 10.74 -148.98 -1.60 -9.78 16 20 C 0.06 1.16 5.71 72.08 0.41 1.58 16 21 C 0.14 3.47 3.10 44.97 0.14 3.61 16 22 H 0.07 2.03 7.88 -2.39 -0.02 2.01 16 23 C -0.09 -2.46 2.92 30.59 0.09 -2.37 16 24 C 0.07 1.53 3.16 31.26 0.10 1.63 16 25 H 0.09 1.46 6.55 -2.38 -0.02 1.45 16 26 C -0.15 -2.78 6.57 32.05 0.21 -2.57 16 27 C -0.15 -2.00 7.02 31.85 0.22 -1.78 16 28 C 0.04 0.72 7.79 72.45 0.56 1.28 16 29 O -0.40 -9.55 10.65 -148.98 -1.59 -11.13 16 30 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 31 H 0.06 3.14 6.07 -2.38 -0.01 3.13 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 35 H 0.03 1.28 6.86 -2.38 -0.02 1.26 16 36 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 37 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.40 12.62 3.72 -92.71 -0.35 12.28 16 40 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.09 1.88 5.78 -2.39 -0.01 1.86 16 42 H 0.13 1.59 8.14 -2.38 -0.02 1.58 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.12 2.02 6.86 -2.39 -0.02 2.00 16 46 H 0.07 2.37 6.32 -2.38 -0.02 2.35 16 47 H 0.07 2.18 7.23 -2.38 -0.02 2.16 16 48 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.06 1.40 8.06 -2.39 -0.02 1.38 16 50 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -63.66 393.93 1.21 -62.44 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.55 Total: 29.79 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 6.45 Total: 6.04 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -4.58 Total: -96.22 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -3.23 Total: -46.64 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -63.66 1.21 -62.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895301182.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.873 kcal (2) G-P(sol) polarization free energy of solvation -63.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds