Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99584 * 2 1 4 4 C 1.52998 * 109.47030 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47274 * 63.32836 * 4 3 2 6 6 C 1.46496 * 120.00217 * 274.31282 * 5 4 3 7 7 C 1.50692 * 109.47279 * 270.00138 * 6 5 4 8 8 H 1.08003 * 120.00038 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00142 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99787 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00102 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46722 * 90.00054 * 11 9 7 13 13 H 1.48493 * 109.47332 * 210.00041 * 11 9 7 14 14 H 1.48498 * 109.47216 * 330.00335 * 11 9 7 15 15 C 1.34774 * 119.99427 * 94.31315 * 5 4 3 16 16 O 1.21285 * 119.99566 * 174.61436 * 15 5 4 17 17 C 1.50700 * 120.00781 * 354.61398 * 15 5 4 18 18 H 1.09001 * 109.39672 * 327.81394 * 17 15 5 19 19 C 1.53074 * 109.39672 * 87.63598 * 17 15 5 20 20 C 1.53344 * 108.45361 * 168.92872 * 19 17 15 21 21 C 1.52927 * 108.67038 * 292.51237 * 20 19 17 22 22 N 1.45752 * 110.50577 * 50.72235 * 21 20 19 23 23 C 1.46499 * 117.94994 * 160.93475 * 22 21 20 24 24 C 1.52995 * 109.47527 * 240.04389 * 23 22 21 25 25 C 1.53003 * 109.46880 * 0.04743 * 23 22 21 26 26 C 1.52997 * 109.47233 * 120.04128 * 23 22 21 27 27 C 1.33362 * 124.10553 * 340.91493 * 22 21 20 28 28 O 1.21284 * 118.24051 * 182.26193 * 27 22 21 29 29 H 1.08996 * 109.47720 * 60.00482 * 1 2 3 30 30 H 1.09004 * 109.46748 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47162 * 299.99818 * 1 2 3 32 32 H 1.08993 * 109.47309 * 59.99975 * 3 2 1 33 33 H 1.09001 * 109.46540 * 299.99917 * 3 2 1 34 34 H 1.09004 * 109.47094 * 303.33101 * 4 3 2 35 35 H 1.09002 * 109.47203 * 183.33209 * 4 3 2 36 36 H 1.09003 * 109.46684 * 30.00436 * 6 5 4 37 37 H 1.08997 * 109.46942 * 149.99737 * 6 5 4 38 38 H 0.97000 * 119.99449 * 179.97438 * 10 9 7 39 39 H 1.09002 * 109.67412 * 288.68083 * 19 17 15 40 40 H 1.09003 * 109.67292 * 49.18193 * 19 17 15 41 41 H 1.09001 * 109.60193 * 52.24423 * 20 19 17 42 42 H 1.09002 * 109.60356 * 172.73156 * 20 19 17 43 43 H 1.08997 * 109.28282 * 290.41449 * 21 20 19 44 44 H 1.08995 * 109.13675 * 170.94231 * 21 20 19 45 45 H 1.09001 * 109.46979 * 64.67029 * 24 23 22 46 46 H 1.09000 * 109.47305 * 184.66558 * 24 23 22 47 47 H 1.09001 * 109.47173 * 304.67048 * 24 23 22 48 48 H 1.08996 * 109.47395 * 59.99395 * 25 23 22 49 49 H 1.09000 * 109.47041 * 179.97438 * 25 23 22 50 50 H 1.08997 * 109.46849 * 299.99752 * 25 23 22 51 51 H 1.09003 * 109.46968 * 59.99967 * 26 23 22 52 52 H 1.08998 * 109.47554 * 180.02562 * 26 23 22 53 53 H 1.09002 * 109.47577 * 300.00742 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9728 0.5284 -1.2352 6 6 4.0118 -0.9339 -1.3132 7 6 5.3660 -1.4247 -0.8705 8 1 6.1220 -0.7180 -0.5615 9 6 5.6397 -2.7760 -0.8589 10 7 4.7186 -3.6366 -1.2337 11 14 7.3187 -3.3843 -0.3108 12 1 7.3030 -3.6274 1.1541 13 1 7.6425 -4.6487 -1.0189 14 1 8.3452 -2.3604 -0.6316 15 6 4.3394 1.2701 -2.2992 16 8 4.7937 0.7313 -3.2863 17 6 4.1849 2.7687 -2.2625 18 1 3.3179 3.0285 -1.6550 19 6 5.4406 3.3944 -1.6504 20 6 5.3861 4.9104 -1.8745 21 6 5.5244 5.1893 -3.3717 22 7 4.5795 4.3802 -4.1312 23 6 4.2609 4.7988 -5.4985 24 6 2.7608 5.0784 -5.6098 25 6 5.0431 6.0691 -5.8382 26 6 4.6462 3.6862 -6.4754 27 6 3.9871 3.2824 -3.6596 28 8 3.2492 2.6659 -4.3989 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.8534 0.5931 0.8578 35 1 3.9786 2.1789 0.0591 36 1 3.2432 -1.3529 -0.6637 37 1 3.8296 -1.2479 -2.3410 38 1 4.9113 -4.5873 -1.2259 39 1 5.4727 3.1823 -0.5817 40 1 6.3277 2.9839 -2.1328 41 1 4.4324 5.2989 -1.5170 42 1 6.2038 5.3894 -1.3358 43 1 6.5394 4.9515 -3.6899 44 1 5.3264 6.2447 -3.5584 45 1 2.5012 5.9259 -4.9755 46 1 2.5101 5.3093 -6.6452 47 1 2.2025 4.1993 -5.2882 48 1 6.1118 5.8700 -5.7589 49 1 4.8064 6.3804 -6.8557 50 1 4.7687 6.8618 -5.1423 51 1 4.0890 2.7811 -6.2334 52 1 4.4096 3.9978 -7.4927 53 1 5.7149 3.4869 -6.3961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896628255.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = -134.417226 kcal Electronic energy + Delta-G solvation = -32699.116076 eV Core-core repulsion = 28570.325049 eV Total energy + Delta-G solvation = -4128.791027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.30821 -40.52930 -38.78037 -37.78275 -36.93171 -36.50747 -34.78949 -32.74623 -31.22344 -30.82314 -29.09514 -28.41530 -28.24683 -27.12483 -25.86183 -24.88488 -23.93615 -23.47174 -21.60812 -20.17504 -19.25403 -18.62515 -18.28114 -17.97126 -17.26388 -17.22634 -16.95527 -16.62915 -16.37404 -16.00815 -15.91828 -15.49300 -15.27314 -15.13515 -14.70391 -14.51721 -14.47142 -14.32124 -14.11085 -13.65312 -13.42240 -13.30706 -13.12272 -13.04720 -13.02490 -12.82975 -12.82132 -12.71264 -12.54648 -12.51549 -12.35366 -12.18505 -12.13213 -12.06115 -11.95924 -11.82380 -11.73630 -11.67798 -10.62821 -10.61241 -10.53383 -10.36636 -9.58785 -9.41770 -8.17918 -6.32978 1.35011 1.39606 1.48943 1.50899 1.70396 2.04322 2.34348 2.48580 2.95448 3.11452 3.35974 3.55972 3.75311 3.76578 3.95606 3.99749 4.05184 4.12650 4.14273 4.19225 4.31644 4.35546 4.46327 4.48316 4.51944 4.58451 4.60547 4.66332 4.68945 4.78211 4.82425 4.84145 4.84762 4.90212 4.95436 5.01199 5.03953 5.09540 5.19632 5.22961 5.29979 5.31146 5.34306 5.42314 5.59205 5.75687 5.88149 6.11009 6.33030 6.52272 6.73766 6.80636 7.22516 7.31180 7.48330 8.89715 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.003841 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.440370 B = 7288.168712 C = 8339.464717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.416 6.416 3 C 0.042 3.958 4 C 0.100 3.900 5 N -0.592 5.592 6 C 0.274 3.726 7 C -0.539 4.539 8 H 0.056 0.944 9 C 0.002 3.998 10 N -0.932 5.932 11 Si 0.971 3.029 12 H -0.260 1.260 13 H -0.284 1.284 14 H -0.271 1.271 15 C 0.512 3.488 16 O -0.590 6.590 17 C -0.116 4.116 18 H 0.141 0.859 19 C -0.114 4.114 20 C -0.121 4.121 21 C 0.094 3.906 22 N -0.591 5.591 23 C 0.159 3.841 24 C -0.157 4.157 25 C -0.144 4.144 26 C -0.164 4.164 27 C 0.527 3.473 28 O -0.573 6.573 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.034 0.966 37 H -0.025 1.025 38 H 0.265 0.735 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.066 0.934 44 H 0.117 0.883 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.042 0.958 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.087 0.913 51 H 0.039 0.961 52 H 0.078 0.922 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.164 28.092 2.206 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.336 6.336 3 C -0.035 4.035 4 C -0.022 4.022 5 N -0.322 5.322 6 C 0.153 3.847 7 C -0.577 4.577 8 H 0.074 0.926 9 C -0.196 4.196 10 N -0.572 5.572 11 Si 0.795 3.205 12 H -0.185 1.185 13 H -0.209 1.209 14 H -0.195 1.195 15 C 0.300 3.700 16 O -0.470 6.470 17 C -0.140 4.140 18 H 0.159 0.841 19 C -0.152 4.152 20 C -0.158 4.158 21 C -0.027 4.027 22 N -0.324 5.324 23 C 0.075 3.925 24 C -0.215 4.215 25 C -0.201 4.201 26 C -0.222 4.222 27 C 0.314 3.686 28 O -0.453 6.453 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.052 0.948 37 H -0.007 1.007 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.142 0.858 43 H 0.084 0.916 44 H 0.135 0.865 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.061 0.939 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.106 0.894 51 H 0.058 0.942 52 H 0.097 0.903 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.228 27.142 1.326 27.265 hybrid contribution 0.269 -1.531 -0.303 1.584 sum -1.959 25.611 1.024 25.706 Atomic orbital electron populations 1.22843 0.80173 1.02996 1.00737 1.88062 1.21069 1.28955 1.95495 1.23233 0.93749 0.84918 1.01630 1.22032 0.93181 0.99978 0.86993 1.48059 1.63488 1.07564 1.13124 1.18634 0.96191 0.75457 0.94428 1.21737 0.99388 0.92377 1.44221 0.92566 1.25937 1.01455 0.96859 0.95327 1.70106 1.35843 1.02504 1.48717 0.85373 0.78789 0.77454 0.78904 1.18463 1.20914 1.19541 1.20604 0.77521 0.89395 0.82489 1.90666 1.46648 1.74798 1.34898 1.21499 1.04805 0.91368 0.96375 0.84148 1.21763 0.93478 0.97489 1.02455 1.21956 1.06153 0.92873 0.94842 1.21923 0.92089 0.96909 0.91763 1.47520 1.44103 1.25679 1.15074 1.20602 0.96174 0.95161 0.80537 1.22151 0.94780 1.01689 1.02912 1.22142 0.99931 0.94402 1.03673 1.22220 1.00475 0.99770 0.99748 1.19566 0.79999 0.80329 0.88691 1.90641 1.39910 1.56786 1.57913 0.94314 0.90266 0.91434 0.88241 0.93798 0.89846 0.85286 0.94814 1.00723 0.92635 0.87719 0.92896 0.88720 0.85759 0.91619 0.86515 0.90939 0.90661 0.93896 0.91384 0.89867 0.89387 0.94211 0.90284 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.42 -15.31 9.07 -148.98 -1.35 -16.66 16 3 C 0.04 1.17 6.12 71.98 0.44 1.61 16 4 C 0.10 3.18 5.45 86.38 0.47 3.65 16 5 N -0.59 -27.26 2.43 -826.16 -2.01 -29.26 16 6 C 0.27 16.28 4.91 85.63 0.42 16.70 16 7 C -0.54 -32.98 9.39 25.60 0.24 -32.74 16 8 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 9 C 0.00 0.15 5.46 84.66 0.46 0.61 16 10 N -0.93 -60.27 13.29 21.45 0.28 -59.98 16 11 Si 0.97 47.04 29.54 68.60 2.03 49.07 16 12 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 13 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 14 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 15 C 0.51 23.79 6.41 87.66 0.56 24.35 16 16 O -0.59 -35.16 15.49 12.70 0.20 -34.96 16 17 C -0.12 -3.62 1.91 -12.43 -0.02 -3.64 16 18 H 0.14 3.45 6.03 -2.39 -0.01 3.44 16 19 C -0.11 -2.46 5.15 30.73 0.16 -2.30 16 20 C -0.12 -1.35 6.02 30.69 0.18 -1.16 16 21 C 0.09 1.33 5.23 86.50 0.45 1.78 16 22 N -0.59 -14.42 2.79 -779.58 -2.17 -16.59 16 23 C 0.16 3.56 1.03 3.60 0.00 3.57 16 24 C -0.16 -3.49 8.42 71.98 0.61 -2.89 16 25 C -0.14 -1.79 7.31 71.98 0.53 -1.26 16 26 C -0.16 -4.78 8.36 71.98 0.60 -4.18 16 27 C 0.53 18.04 6.04 87.71 0.53 18.57 16 28 O -0.57 -25.46 11.41 12.70 0.14 -25.31 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.22 7.38 -2.39 -0.02 1.20 16 34 H 0.08 2.81 8.10 -2.38 -0.02 2.79 16 35 H 0.13 2.74 5.03 -2.39 -0.01 2.73 16 36 H 0.03 2.08 6.71 -2.39 -0.02 2.07 16 37 H -0.03 -1.79 7.50 -2.39 -0.02 -1.81 16 38 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 39 H 0.10 1.79 6.69 -2.39 -0.02 1.77 16 40 H 0.05 1.45 8.09 -2.39 -0.02 1.43 16 41 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 42 H 0.12 0.62 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.95 8.04 -2.39 -0.02 0.93 16 44 H 0.12 0.83 6.03 -2.39 -0.01 0.82 16 45 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.04 1.32 5.91 -2.39 -0.01 1.30 16 48 H 0.07 0.81 7.62 -2.39 -0.02 0.79 16 49 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.09 0.68 6.74 -2.39 -0.02 0.66 16 51 H 0.04 1.57 5.84 -2.39 -0.01 1.56 16 52 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 53 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -97.34 404.93 4.89 -92.45 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.89 Total: 16.56 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 6.88 Total: 24.70 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -3.90 Total: -105.84 kcal Atomic # 8 Polarization: -75.93 SS G_CDS: -1.01 Total: -76.94 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -97.34 4.89 -92.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896628255.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.964 kcal (2) G-P(sol) polarization free energy of solvation -97.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds