Wall clock time and date at job start Sat Apr 11 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47136 * 2 1 4 4 C 1.52998 * 109.47044 * 239.99987 * 2 1 3 5 5 N 1.46494 * 109.47504 * 60.00186 * 4 2 1 6 6 C 1.34777 * 120.00383 * 179.97438 * 5 4 2 7 7 O 1.21586 * 119.99556 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00235 * 179.97438 * 6 5 4 9 9 C 1.47026 * 125.64748 * 0.03126 * 8 6 5 10 10 C 1.54323 * 107.27279 * 181.01789 * 9 8 6 11 11 C 1.55165 * 102.94087 * 22.19480 * 10 9 8 12 12 O 1.42891 * 111.00139 * 82.57118 * 11 10 9 13 13 C 1.50697 * 111.00309 * 206.38512 * 11 10 9 14 14 H 1.08000 * 120.00388 * 359.97438 * 13 11 10 15 15 C 1.37883 * 119.99767 * 179.97438 * 13 11 10 16 16 N 1.31513 * 120.00077 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99778 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47267 * 90.00455 * 17 15 13 19 19 H 1.48504 * 109.46925 * 210.00628 * 17 15 13 20 20 H 1.48507 * 109.47338 * 330.00082 * 17 15 13 21 21 C 1.47422 * 125.65227 * 179.71996 * 8 6 5 22 22 C 1.53003 * 109.46780 * 119.99916 * 2 1 3 23 23 C 1.53172 * 109.54250 * 59.55634 * 22 2 1 24 24 C 1.53096 * 109.16237 * 183.15134 * 23 22 2 25 25 O 1.42905 * 109.41404 * 57.60654 * 24 23 22 26 26 C 1.42905 * 114.09920 * 298.84296 * 25 24 23 27 27 C 1.53093 * 109.41141 * 61.15774 * 26 25 24 28 28 H 1.09003 * 109.46951 * 300.00616 * 1 2 3 29 29 H 1.09002 * 109.46636 * 60.00007 * 1 2 3 30 30 H 1.09001 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46987 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47353 * 299.99554 * 3 2 1 33 33 H 1.09004 * 109.46982 * 60.00033 * 3 2 1 34 34 H 1.09009 * 109.46815 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47136 * 300.00099 * 4 2 1 36 36 H 0.97004 * 119.99477 * 0.02562 * 5 4 2 37 37 H 1.08998 * 109.88726 * 300.43954 * 9 8 6 38 38 H 1.08999 * 109.88403 * 61.60484 * 9 8 6 39 39 H 1.08996 * 110.72114 * 140.55561 * 10 9 8 40 40 H 1.09003 * 110.72292 * 263.65453 * 10 9 8 41 41 H 0.96704 * 113.99580 * 180.02562 * 12 11 10 42 42 H 0.96993 * 120.00142 * 179.97438 * 16 15 13 43 43 H 1.09003 * 110.36696 * 274.75567 * 21 8 6 44 44 H 1.09001 * 110.36442 * 37.06708 * 21 8 6 45 45 H 1.09006 * 109.53654 * 179.82327 * 22 2 1 46 46 H 1.08996 * 109.52430 * 63.24966 * 23 22 2 47 47 H 1.08993 * 109.52369 * 303.05250 * 23 22 2 48 48 H 1.09005 * 109.47867 * 297.62453 * 24 23 22 49 49 H 1.09001 * 109.48124 * 177.59174 * 24 23 22 50 50 H 1.08996 * 109.47867 * 181.14448 * 26 25 24 51 51 H 1.09002 * 109.47579 * 301.17693 * 26 25 24 52 52 H 1.09001 * 109.52010 * 62.29951 * 27 26 25 53 53 H 1.09003 * 109.51713 * 182.42219 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5518 -0.0307 -2.4454 6 6 1.8778 -0.4909 -3.6695 7 8 2.5768 -1.4795 -3.7810 8 7 1.4281 0.1441 -4.7699 9 6 0.5790 1.3443 -4.7798 10 6 0.2984 1.6950 -6.2563 11 6 0.5366 0.3460 -6.9851 12 8 -0.6202 -0.4892 -6.9078 13 6 0.9420 0.5711 -8.4190 14 1 1.0296 1.5763 -8.8040 15 6 1.2011 -0.5064 -9.2394 16 7 1.0939 -1.7305 -8.7707 17 14 1.7043 -0.2275 -11.0165 18 1 3.1832 -0.1238 -11.1019 19 1 1.2391 -1.3671 -11.8474 20 1 1.0903 1.0302 -11.5133 21 6 1.7116 -0.2458 -6.1631 22 6 2.0399 -0.7213 1.2493 23 6 1.5211 -2.1624 1.2566 24 6 1.9705 -2.8518 2.5475 25 8 1.4892 -2.1137 3.6726 26 6 1.9793 -0.7732 3.7439 27 6 1.5302 -0.0004 2.5010 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7216 -1.2490 35 1 1.6766 -1.7489 -1.2492 36 1 0.9944 0.7582 -2.3564 37 1 -0.3585 1.1395 -4.2628 38 1 1.0991 2.1705 -4.2951 39 1 -0.7321 2.0260 -6.3849 40 1 0.9935 2.4560 -6.6108 41 1 -0.5185 -1.3436 -7.3490 42 1 1.2758 -2.4885 -9.3479 43 1 2.6597 0.1806 -6.4910 44 1 1.7305 -1.3316 -6.2567 45 1 3.1300 -0.7247 1.2489 46 1 1.9243 -2.6990 0.3978 47 1 0.4324 -2.1579 1.2062 48 1 3.0594 -2.8921 2.5780 49 1 1.5682 -3.8644 2.5779 50 1 1.5834 -0.2885 4.6363 51 1 3.0683 -0.7864 3.7901 52 1 0.4416 0.0478 2.4758 53 1 1.9390 1.0096 2.5328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897020486.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:22 Heat of formation + Delta-G solvation = -160.203287 kcal Electronic energy + Delta-G solvation = -31441.874958 eV Core-core repulsion = 27311.965764 eV Total energy + Delta-G solvation = -4129.909194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52917 -40.76587 -39.20051 -38.18364 -36.06509 -35.03605 -34.15012 -32.39888 -32.12144 -31.48702 -29.60319 -28.27274 -27.93829 -26.68589 -25.63496 -24.29542 -23.88983 -21.69222 -21.43354 -21.02613 -19.66493 -19.19044 -18.77877 -17.39673 -17.10539 -16.97970 -16.92414 -16.69090 -16.27790 -16.00600 -15.74337 -15.46612 -15.39391 -14.87077 -14.75268 -14.63888 -14.48122 -14.42109 -14.17082 -13.71064 -13.49856 -13.35134 -13.22081 -13.01829 -12.84226 -12.73636 -12.57763 -12.51700 -12.31779 -12.27692 -12.21764 -12.10006 -12.00490 -11.83521 -11.52115 -11.36184 -11.21499 -11.10789 -10.99327 -10.65020 -10.39622 -10.34067 -10.14484 -9.30601 -8.25476 -6.42483 1.42201 1.44181 1.54136 1.70532 2.16657 2.38222 3.00514 3.01248 3.11264 3.55227 3.64736 3.73713 3.80836 4.08517 4.10327 4.11972 4.15176 4.19426 4.26321 4.33538 4.33840 4.43096 4.56945 4.61127 4.69016 4.74493 4.75392 4.76307 4.80886 4.85844 4.87554 4.98909 5.00521 5.05113 5.07668 5.09613 5.12835 5.16830 5.24284 5.28107 5.32043 5.39584 5.45257 5.46146 5.54478 5.57904 5.77049 6.02845 6.18693 6.31458 6.65008 7.07784 7.30241 7.39272 7.58608 8.80164 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.002233 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.267946 B =12537.542933 C =12952.288595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 C -0.143 4.143 4 C 0.148 3.852 5 N -0.724 5.724 6 C 0.708 3.292 7 O -0.647 6.647 8 N -0.633 5.633 9 C 0.108 3.892 10 C -0.111 4.111 11 C 0.233 3.767 12 O -0.590 6.590 13 C -0.554 4.554 14 H 0.072 0.928 15 C 0.023 3.977 16 N -0.919 5.919 17 Si 0.966 3.034 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.264 1.264 21 C 0.125 3.875 22 C -0.071 4.071 23 C -0.158 4.158 24 C 0.060 3.940 25 O -0.405 6.405 26 C 0.054 3.946 27 C -0.146 4.146 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.406 0.594 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.377 0.623 42 H 0.270 0.730 43 H 0.042 0.958 44 H 0.036 0.964 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.096 0.904 50 H 0.105 0.895 51 H 0.054 0.946 52 H 0.075 0.925 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.125 7.509 23.698 24.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.057 4.057 3 C -0.200 4.200 4 C 0.024 3.976 5 N -0.382 5.382 6 C 0.410 3.590 7 O -0.530 6.530 8 N -0.370 5.370 9 C -0.014 4.014 10 C -0.148 4.148 11 C 0.192 3.808 12 O -0.399 6.399 13 C -0.593 4.593 14 H 0.090 0.910 15 C -0.177 4.177 16 N -0.559 5.559 17 Si 0.792 3.208 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.188 1.188 21 C 0.001 3.999 22 C -0.090 4.090 23 C -0.196 4.196 24 C -0.016 4.016 25 O -0.324 6.324 26 C -0.022 4.022 27 C -0.183 4.183 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.244 0.756 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.227 0.773 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.114 0.886 50 H 0.123 0.877 51 H 0.073 0.927 52 H 0.094 0.906 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.302 7.025 24.130 25.134 hybrid contribution 0.651 -0.717 -1.914 2.145 sum 0.953 6.309 22.217 23.115 Atomic orbital electron populations 1.22004 0.93591 1.02150 1.02538 1.20687 0.96544 0.96234 0.92219 1.21934 1.01230 0.93969 1.02847 1.21341 0.98070 0.95500 0.82683 1.44969 1.56660 1.33581 1.02974 1.15790 0.80184 0.82167 0.80892 1.90839 1.45795 1.29890 1.86501 1.47828 1.53110 1.30853 1.05159 1.22101 0.94182 0.86598 0.98522 1.22601 1.02896 0.96570 0.92781 1.19885 0.81493 0.87371 0.92067 1.86044 1.40355 1.33279 1.80229 1.21845 1.47445 0.93813 0.96160 0.91022 1.25869 0.93912 0.94791 1.03145 1.69690 1.49446 0.98778 1.37973 0.85426 0.78326 0.78030 0.79067 1.20292 1.21001 1.18772 1.22737 0.99510 0.98964 0.78674 1.21105 1.00228 0.94012 0.93640 1.22380 1.02283 0.96544 0.98373 1.22623 0.98590 0.95522 0.84893 1.87902 1.72270 1.25778 1.46469 1.22762 0.98651 0.81965 0.98841 1.22314 1.02427 1.00151 0.93445 0.90245 0.92890 0.92970 0.92570 0.92682 0.90008 0.93079 0.93180 0.75594 0.91109 0.89198 0.89665 0.89145 0.77278 0.92045 0.93986 0.94562 0.90732 0.91402 0.90870 0.92725 0.88588 0.87710 0.92743 0.90598 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 7.60 71.98 0.55 -1.69 16 2 C -0.06 -0.89 0.33 -52.18 -0.02 -0.91 16 3 C -0.14 -1.86 7.95 71.98 0.57 -1.29 16 4 C 0.15 3.67 4.22 86.38 0.36 4.03 16 5 N -0.72 -20.89 4.92 -478.54 -2.35 -23.24 16 6 C 0.71 29.18 8.49 179.06 1.52 30.70 16 7 O -0.65 -32.90 16.60 -3.99 -0.07 -32.96 16 8 N -0.63 -26.25 3.32 -829.32 -2.76 -29.00 16 9 C 0.11 3.47 6.15 86.73 0.53 4.00 16 10 C -0.11 -4.12 6.12 31.79 0.19 -3.93 16 11 C 0.23 11.30 0.89 -10.07 -0.01 11.29 16 12 O -0.59 -30.93 13.19 -148.98 -1.97 -32.90 16 13 C -0.55 -28.78 8.25 25.60 0.21 -28.57 16 14 H 0.07 3.56 7.77 -2.91 -0.02 3.54 16 15 C 0.02 1.22 5.30 84.66 0.45 1.67 16 16 N -0.92 -50.76 10.72 21.45 0.23 -50.53 16 17 Si 0.97 41.85 29.54 68.60 2.03 43.87 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 20 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 21 C 0.13 6.27 5.64 86.93 0.49 6.76 16 22 C -0.07 -1.00 1.64 -10.68 -0.02 -1.02 16 23 C -0.16 -2.60 4.70 30.68 0.14 -2.45 16 24 C 0.06 0.95 6.84 72.01 0.49 1.44 16 25 O -0.40 -7.20 10.77 -148.98 -1.60 -8.80 16 26 C 0.05 0.66 6.84 72.01 0.49 1.15 16 27 C -0.15 -1.58 4.70 30.68 0.14 -1.44 16 28 H 0.08 0.94 6.37 -2.39 -0.02 0.93 16 29 H 0.05 0.85 6.86 -2.39 -0.02 0.83 16 30 H 0.05 0.92 6.36 -2.39 -0.02 0.90 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.05 0.76 6.86 -2.39 -0.02 0.74 16 33 H 0.08 0.75 6.51 -2.38 -0.02 0.73 16 34 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.05 1.41 6.52 -2.39 -0.02 1.40 16 36 H 0.41 9.36 5.15 -92.71 -0.48 8.88 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.09 3.09 8.02 -2.39 -0.02 3.08 16 41 H 0.38 21.01 6.93 -74.05 -0.51 20.49 16 42 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 43 H 0.04 2.17 8.04 -2.39 -0.02 2.15 16 44 H 0.04 2.10 7.64 -2.39 -0.02 2.09 16 45 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.07 1.26 6.63 -2.39 -0.02 1.25 16 47 H 0.07 1.27 6.27 -2.39 -0.01 1.25 16 48 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.08 0.87 6.29 -2.39 -0.01 0.86 16 53 H 0.09 0.72 6.62 -2.39 -0.02 0.70 16 Total: -1.00 -68.92 394.61 -0.45 -69.37 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: -0.07 Total: 44.44 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 6.11 Total: 19.75 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -4.88 Total: -102.77 kcal Atomic # 8 Polarization: -71.03 SS G_CDS: -3.64 Total: -74.66 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -68.92 -0.45 -69.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897020486.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.832 kcal (2) G-P(sol) polarization free energy of solvation -68.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds