Wall clock time and date at job start Sat Apr 11 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46734 * 2 1 4 4 C 1.52998 * 109.47174 * 119.99728 * 2 1 3 5 5 H 1.08998 * 109.48197 * 296.13755 * 4 2 1 6 6 O 1.42907 * 109.47952 * 176.11601 * 4 2 1 7 7 C 1.42903 * 114.09761 * 178.86030 * 6 4 2 8 8 C 1.53100 * 109.41332 * 61.15580 * 7 6 4 9 9 C 1.53172 * 109.21740 * 302.36013 * 8 7 6 10 10 C 1.53084 * 109.48071 * 56.17322 * 4 2 1 11 11 H 1.09001 * 109.52618 * 297.55751 * 10 4 2 12 12 C 1.50701 * 109.52548 * 57.68318 * 10 4 2 13 13 O 1.21285 * 119.99695 * 34.60671 * 12 10 4 14 14 N 1.34772 * 120.00426 * 214.60810 * 12 10 4 15 15 C 1.46502 * 119.99839 * 354.42041 * 14 12 10 16 16 C 1.46498 * 120.00219 * 174.42334 * 14 12 10 17 17 H 1.09000 * 110.64460 * 3.13590 * 16 14 12 18 18 C 1.54323 * 110.72539 * 126.47822 * 16 14 12 19 19 N 1.47017 * 107.27808 * 140.55476 * 18 16 14 20 20 C 1.36935 * 125.65259 * 181.02490 * 19 18 16 21 21 H 1.08004 * 119.99912 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00176 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99822 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00075 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47486 * 59.99557 * 24 22 20 26 26 H 1.48503 * 109.47508 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46987 * 299.99472 * 24 22 20 28 28 C 1.47427 * 108.69939 * 1.05801 * 19 18 16 29 29 C 1.54905 * 104.83382 * 335.87224 * 28 19 18 30 30 H 1.09006 * 111.04154 * 278.91928 * 29 28 19 31 31 O 1.42907 * 111.00509 * 155.08424 * 29 28 19 32 32 H 1.09004 * 109.47370 * 60.00114 * 1 2 3 33 33 H 1.08997 * 109.47025 * 180.02562 * 1 2 3 34 34 H 1.09010 * 109.47135 * 299.99755 * 1 2 3 35 35 H 1.09000 * 109.47191 * 240.00302 * 2 1 3 36 36 H 1.09000 * 109.46774 * 184.99944 * 3 2 1 37 37 H 1.08999 * 109.47327 * 304.99345 * 3 2 1 38 38 H 1.09000 * 109.47413 * 65.00019 * 3 2 1 39 39 H 1.08994 * 109.48226 * 301.17833 * 7 6 4 40 40 H 1.09000 * 109.48126 * 181.13874 * 7 6 4 41 41 H 1.08998 * 109.51856 * 62.30030 * 8 7 6 42 42 H 1.08997 * 109.51785 * 182.42298 * 8 7 6 43 43 H 1.08994 * 109.54400 * 176.87832 * 9 8 7 44 44 H 1.09008 * 109.54375 * 297.14873 * 9 8 7 45 45 H 1.08999 * 109.47403 * 94.50651 * 15 14 12 46 46 H 1.09004 * 109.47196 * 214.50426 * 15 14 12 47 47 H 1.08995 * 109.47351 * 334.50019 * 15 14 12 48 48 H 1.09000 * 109.88328 * 259.97699 * 18 16 14 49 49 H 1.09007 * 109.88213 * 21.13332 * 18 16 14 50 50 H 0.97003 * 119.99759 * 179.97438 * 23 22 20 51 51 H 1.09000 * 110.36941 * 217.03478 * 28 19 18 52 52 H 1.09002 * 110.45858 * 94.75881 * 28 19 18 53 53 H 0.96695 * 113.99656 * 67.80518 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7344 -0.1690 2.1380 6 8 3.4661 -0.8008 1.2047 7 6 4.0508 -1.4370 2.3429 8 6 3.5442 -2.8787 2.4362 9 6 2.0148 -2.8713 2.5197 10 6 1.4527 -2.1340 1.2986 11 1 0.3671 -2.0748 1.3761 12 6 1.8281 -2.8797 0.0440 13 8 2.9038 -2.6818 -0.4801 14 7 0.9684 -3.7662 -0.4958 15 6 -0.2773 -4.0961 0.2010 16 6 1.2797 -4.4001 -1.7794 17 1 2.2624 -4.0886 -2.1335 18 6 1.1986 -5.9368 -1.6635 19 7 0.5805 -6.4360 -2.9005 20 6 0.3112 -7.7481 -3.1850 21 1 0.5566 -8.5176 -2.4680 22 6 -0.2772 -8.0893 -4.3951 23 7 -0.5768 -7.1515 -5.2687 24 14 -0.6452 -9.8791 -4.7829 25 1 -1.5776 -10.4249 -3.7641 26 1 -1.2694 -9.9763 -6.1269 27 1 0.6183 -10.6591 -4.7660 28 6 0.2993 -5.2899 -3.7842 29 6 0.1878 -4.0730 -2.8322 30 1 -0.7985 -4.0263 -2.3706 31 8 0.4869 -2.8561 -3.5192 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3634 0.5138 0.8901 35 1 1.8933 -0.5138 -0.8900 36 1 3.1262 1.4439 -0.0896 37 1 1.6054 1.9816 -0.8419 38 1 1.7515 1.9299 0.9314 39 1 3.7715 -0.8945 3.2460 40 1 5.1360 -1.4389 2.2408 41 1 3.8581 -3.4330 1.5517 42 1 3.9554 -3.3522 3.3277 43 1 1.6452 -3.8966 2.5305 44 1 1.7018 -2.3598 3.4300 45 1 -1.0829 -3.4670 -0.1774 46 1 -0.5233 -5.1440 0.0291 47 1 -0.1525 -3.9230 1.2699 48 1 2.1999 -6.3537 -1.5550 49 1 0.5853 -6.2120 -0.8054 50 1 -0.9877 -7.3900 -6.1145 51 1 -0.6397 -5.4425 -4.3163 52 1 1.1160 -5.1448 -4.4914 53 1 -0.1677 -2.6106 -4.1872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047385006.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:56 Heat of formation + Delta-G solvation = -123.705674 kcal Electronic energy + Delta-G solvation = -33023.121254 eV Core-core repulsion = 28894.794715 eV Total energy + Delta-G solvation = -4128.326539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.97198 -40.24577 -38.74714 -36.74647 -36.31350 -36.23493 -34.72127 -33.73160 -31.41147 -30.30167 -28.97278 -28.06110 -27.81281 -26.44798 -25.85803 -24.96462 -22.89211 -22.35069 -21.24611 -21.04576 -19.76137 -19.05093 -18.59384 -17.87304 -17.41760 -17.05236 -17.04105 -16.68719 -16.27963 -15.65347 -15.53271 -15.15632 -15.05144 -14.94871 -14.86708 -14.55045 -14.32946 -13.95757 -13.87977 -13.78149 -13.57606 -13.36400 -13.22698 -13.14184 -13.02322 -12.97301 -12.85366 -12.71580 -12.66624 -12.37417 -12.12307 -12.09207 -11.97995 -11.91591 -11.71423 -11.47922 -11.37604 -11.22071 -11.02090 -10.77393 -10.49687 -10.18837 -9.57481 -8.98916 -7.81855 -5.29536 1.46995 1.50379 1.56670 1.72584 1.94395 2.46982 2.92016 3.09073 3.29293 3.46263 3.65436 3.69635 3.77996 3.84960 3.98636 4.02733 4.07493 4.14141 4.16435 4.17291 4.26583 4.36898 4.39575 4.42302 4.51641 4.55745 4.58911 4.65442 4.74995 4.76371 4.80186 4.82566 4.85924 4.92929 4.98416 5.00802 5.01563 5.06220 5.16646 5.29080 5.32607 5.34399 5.42573 5.45666 5.46387 5.56656 5.65590 6.18455 6.48862 6.50969 6.83201 7.02510 7.32087 7.67464 8.30547 9.19408 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019165 B = 0.003171 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.668800 B = 8828.559746 C = 9577.748825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 C -0.134 4.134 4 C 0.114 3.886 5 H 0.094 0.906 6 O -0.387 6.387 7 C 0.061 3.939 8 C -0.161 4.161 9 C -0.108 4.108 10 C -0.137 4.137 11 H 0.126 0.874 12 C 0.521 3.479 13 O -0.562 6.562 14 N -0.605 5.605 15 C 0.063 3.937 16 C 0.152 3.848 17 H 0.072 0.928 18 C 0.132 3.868 19 N -0.616 5.616 20 C -0.245 4.245 21 H 0.085 0.915 22 C -0.062 4.062 23 N -0.948 5.948 24 Si 0.985 3.015 25 H -0.271 1.271 26 H -0.293 1.293 27 H -0.282 1.282 28 C 0.137 3.863 29 C 0.088 3.912 30 H 0.079 0.921 31 O -0.570 6.570 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.105 0.895 48 H 0.015 0.985 49 H 0.056 0.944 50 H 0.250 0.750 51 H 0.089 0.911 52 H -0.017 1.017 53 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 14.981 20.081 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C -0.191 4.191 4 C 0.056 3.944 5 H 0.111 0.889 6 O -0.306 6.306 7 C -0.016 4.016 8 C -0.199 4.199 9 C -0.146 4.146 10 C -0.158 4.158 11 H 0.144 0.856 12 C 0.310 3.690 13 O -0.439 6.439 14 N -0.338 5.338 15 C -0.078 4.078 16 C 0.046 3.954 17 H 0.091 0.909 18 C 0.006 3.994 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.103 0.897 22 C -0.254 4.254 23 N -0.597 5.597 24 Si 0.812 3.188 25 H -0.196 1.196 26 H -0.219 1.219 27 H -0.208 1.208 28 C 0.010 3.990 29 C 0.027 3.973 30 H 0.097 0.903 31 O -0.377 6.377 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.056 0.944 42 H 0.112 0.888 43 H 0.095 0.905 44 H 0.129 0.871 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.124 0.876 48 H 0.033 0.967 49 H 0.074 0.926 50 H 0.059 0.941 51 H 0.106 0.894 52 H 0.001 0.999 53 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.597 15.035 19.905 24.952 hybrid contribution -0.256 -1.455 -1.444 2.066 sum -0.852 13.580 18.460 22.933 Atomic orbital electron populations 1.21834 0.92616 1.02127 1.03200 1.21151 0.96849 0.96944 0.96658 1.21676 1.00510 0.94518 1.02400 1.22068 0.81269 0.92214 0.98849 0.88859 1.88035 1.19656 1.78813 1.44063 1.22619 0.98200 0.91873 0.88881 1.22207 0.96895 0.98454 1.02296 1.21641 0.94987 1.01413 0.96524 1.22292 1.04090 0.96783 0.92681 0.85577 1.21058 0.83287 0.78598 0.86030 1.90710 1.24131 1.65357 1.63695 1.47874 1.22298 1.42974 1.20665 1.22127 0.84996 1.02381 0.98314 1.21548 0.98356 0.91834 0.83638 0.90928 1.21617 0.96003 0.91229 0.90517 1.44505 1.71195 1.03025 1.15675 1.19433 1.33608 0.82964 1.01301 0.89691 1.25663 1.01300 1.02190 0.96282 1.69987 1.48580 1.32115 1.09009 0.85065 0.77899 0.78884 0.76920 1.19631 1.21879 1.20832 1.22313 1.00404 0.84774 0.91463 1.23384 0.97152 0.84119 0.92647 0.90341 1.86440 1.54073 1.40540 1.56646 0.92367 0.92824 0.89845 0.94341 0.93958 0.92536 0.90832 0.90806 0.89653 0.94393 0.88792 0.90474 0.87057 0.91223 0.90969 0.87614 0.96684 0.92586 0.94066 0.89353 0.99866 0.75943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.74 71.98 0.63 -1.84 16 2 C -0.10 -2.28 2.37 -10.79 -0.03 -2.31 16 3 C -0.13 -2.73 9.02 71.98 0.65 -2.08 16 4 C 0.11 2.41 1.83 30.62 0.06 2.47 16 5 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 6 O -0.39 -10.48 8.55 -129.51 -1.11 -11.59 16 7 C 0.06 1.22 6.84 72.02 0.49 1.71 16 8 C -0.16 -3.24 5.74 30.68 0.18 -3.06 16 9 C -0.11 -1.71 5.36 30.76 0.16 -1.54 16 10 C -0.14 -2.78 1.23 -11.41 -0.01 -2.79 16 11 H 0.13 1.85 4.92 -2.39 -0.01 1.84 16 12 C 0.52 16.19 5.07 87.66 0.44 16.64 16 13 O -0.56 -23.14 12.71 16.42 0.21 -22.93 16 14 N -0.61 -18.66 2.89 -815.95 -2.35 -21.02 16 15 C 0.06 1.37 8.82 127.77 1.13 2.49 16 16 C 0.15 6.07 3.10 46.18 0.14 6.22 16 17 H 0.07 3.47 7.00 -2.39 -0.02 3.45 16 18 C 0.13 5.74 6.83 86.73 0.59 6.33 16 19 N -0.62 -32.07 3.39 -691.99 -2.35 -34.42 16 20 C -0.24 -13.58 10.27 84.03 0.86 -12.72 16 21 H 0.09 4.48 7.83 -2.91 -0.02 4.46 16 22 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 23 N -0.95 -55.49 10.09 21.65 0.22 -55.27 16 24 Si 0.98 44.77 29.55 68.60 2.03 46.80 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 28 C 0.14 6.89 5.62 86.85 0.49 7.38 16 29 C 0.09 3.51 4.00 31.99 0.13 3.64 16 30 H 0.08 2.83 7.18 -2.38 -0.02 2.81 16 31 O -0.57 -21.66 13.47 -148.98 -2.01 -23.66 16 32 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.05 0.97 6.39 -2.39 -0.02 0.95 16 34 H 0.08 0.98 8.14 -2.38 -0.02 0.97 16 35 H 0.04 1.30 6.76 -2.39 -0.02 1.28 16 36 H 0.04 1.01 7.93 -2.39 -0.02 0.99 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.04 1.10 6.67 -2.39 -0.02 1.09 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.17 7.55 -2.39 -0.02 1.15 16 44 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.07 1.31 7.92 -2.39 -0.02 1.30 16 46 H 0.07 1.73 6.05 -2.39 -0.01 1.72 16 47 H 0.11 1.50 5.72 -2.39 -0.01 1.49 16 48 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.06 2.18 5.89 -2.38 -0.01 2.17 16 50 H 0.25 14.20 8.31 -92.71 -0.77 13.42 16 51 H 0.09 4.85 5.87 -2.39 -0.01 4.84 16 52 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 53 H 0.39 11.39 9.12 -74.06 -0.68 10.71 16 Total: -1.00 -77.31 392.97 1.25 -76.06 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.23 Total: 28.46 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 6.38 Total: 17.57 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -4.48 Total: -110.71 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: -2.91 Total: -58.18 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -77.31 1.25 -76.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047385006.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.647 kcal (2) G-P(sol) polarization free energy of solvation -77.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds