Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47033 * 2 1 4 4 C 1.52995 * 109.46939 * 119.99900 * 2 1 3 5 5 H 1.09003 * 109.48537 * 299.15538 * 4 2 1 6 6 O 1.42907 * 109.48051 * 179.13439 * 4 2 1 7 7 C 1.42908 * 114.09821 * 178.85152 * 6 4 2 8 8 C 1.53093 * 109.41794 * 61.15320 * 7 6 4 9 9 C 1.53179 * 109.16538 * 302.39451 * 8 7 6 10 10 C 1.53100 * 109.49335 * 59.18654 * 4 2 1 11 11 H 1.09006 * 109.51635 * 297.50603 * 10 4 2 12 12 C 1.50697 * 109.51837 * 57.62340 * 10 4 2 13 13 O 1.21279 * 120.00673 * 27.69797 * 12 10 4 14 14 N 1.34783 * 119.99935 * 207.69051 * 12 10 4 15 15 C 1.46497 * 119.99917 * 184.57842 * 14 12 10 16 16 C 1.53005 * 109.46744 * 187.09253 * 15 14 12 17 17 H 1.08999 * 109.68040 * 59.74574 * 16 15 14 18 18 C 1.53295 * 109.68098 * 180.26736 * 16 15 14 19 19 O 1.42973 * 109.21863 * 171.98352 * 18 16 15 20 20 C 1.42958 * 114.20107 * 297.47535 * 19 18 16 21 21 C 1.53303 * 109.22179 * 62.56255 * 20 19 18 22 22 N 1.47150 * 108.38272 * 307.69753 * 21 20 19 23 23 C 1.36939 * 120.97956 * 230.51725 * 22 21 20 24 24 H 1.07996 * 120.00078 * 157.14727 * 23 22 21 25 25 C 1.38813 * 119.99979 * 337.13882 * 23 22 21 26 26 N 1.31618 * 119.99798 * 338.36727 * 25 23 22 27 27 Si 1.86800 * 119.99975 * 158.36684 * 25 23 22 28 28 H 1.48499 * 109.46963 * 60.18041 * 27 25 23 29 29 H 1.48499 * 109.47039 * 180.18062 * 27 25 23 30 30 H 1.48497 * 109.47043 * 300.18267 * 27 25 23 31 31 H 1.09001 * 109.47392 * 299.99870 * 1 2 3 32 32 H 1.09001 * 109.46871 * 60.00165 * 1 2 3 33 33 H 1.09003 * 109.46989 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47392 * 240.00130 * 2 1 3 35 35 H 1.08995 * 109.47293 * 184.97472 * 3 2 1 36 36 H 1.09000 * 109.47272 * 304.98080 * 3 2 1 37 37 H 1.09003 * 109.46924 * 64.97770 * 3 2 1 38 38 H 1.08993 * 109.47876 * 181.14104 * 7 6 4 39 39 H 1.08997 * 109.47776 * 301.17324 * 7 6 4 40 40 H 1.08991 * 109.52190 * 182.48573 * 8 7 6 41 41 H 1.09004 * 109.56829 * 62.33011 * 8 7 6 42 42 H 1.09003 * 109.54103 * 297.11255 * 9 8 7 43 43 H 1.08994 * 109.54173 * 176.84635 * 9 8 7 44 44 H 0.96999 * 119.99651 * 4.57805 * 14 12 10 45 45 H 1.08993 * 109.47129 * 307.08536 * 15 14 12 46 46 H 1.08994 * 109.46977 * 67.09437 * 15 14 12 47 47 H 1.09006 * 109.50722 * 291.94578 * 18 16 15 48 48 H 1.08997 * 109.51657 * 52.09806 * 18 16 15 49 49 H 1.09001 * 109.51275 * 302.63827 * 20 19 18 50 50 H 1.08999 * 109.51513 * 182.48488 * 20 19 18 51 51 H 1.09004 * 109.67705 * 187.97157 * 21 20 19 52 52 H 1.08995 * 109.71109 * 67.44070 * 21 20 19 53 53 H 0.97004 * 119.99445 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6891 -0.1989 2.1393 6 8 3.4689 -0.7390 1.2393 7 6 4.0525 -1.3700 2.3811 8 6 3.6065 -2.8334 2.4373 9 6 2.0765 -2.8915 2.4815 10 6 1.5132 -2.1587 1.2600 11 1 0.4245 -2.1472 1.3121 12 6 1.9498 -2.8644 0.0021 13 8 2.9680 -2.5241 -0.5620 14 7 1.2086 -3.8739 -0.4961 15 6 1.6832 -4.6257 -1.6605 16 6 0.5883 -5.5868 -2.1278 17 1 -0.3049 -5.0229 -2.3965 18 6 1.0824 -6.3809 -3.3424 19 8 0.1318 -7.4020 -3.6555 20 6 -0.0484 -8.3720 -2.6209 21 6 -0.6008 -7.6791 -1.3700 22 7 0.2693 -6.5364 -1.0500 23 6 0.7672 -6.3618 0.2137 24 1 1.6617 -5.7759 0.3655 25 6 0.1220 -6.9375 1.2996 26 7 -1.1471 -7.2742 1.2083 27 14 1.0551 -7.2345 2.8904 28 1 1.5557 -5.9405 3.4196 29 1 0.1484 -7.8593 3.8868 30 1 2.2029 -8.1399 2.6294 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1263 1.4438 -0.0891 36 1 1.6056 1.9814 -0.8420 37 1 1.7512 1.9299 0.9312 38 1 5.1389 -1.3236 2.3063 39 1 3.7279 -0.8561 3.2859 40 1 4.0149 -3.3045 3.3313 41 1 3.9656 -3.3588 1.5523 42 1 1.7195 -2.4104 3.3921 43 1 1.7505 -3.9315 2.4652 44 1 0.3610 -4.1026 -0.0837 45 1 1.9263 -3.9327 -2.4659 46 1 2.5731 -5.1933 -1.3884 47 1 1.1923 -5.7110 -4.1952 48 1 2.0444 -6.8384 -3.1115 49 1 0.9093 -8.8368 -2.3868 50 1 -0.7519 -9.1345 -2.9553 51 1 -0.6083 -8.3801 -0.5352 52 1 -1.6141 -7.3265 -1.5623 53 1 -1.5980 -7.6762 1.9673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050925463.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -125.116993 kcal Electronic energy + Delta-G solvation = -33252.111653 eV Core-core repulsion = 29123.723915 eV Total energy + Delta-G solvation = -4128.387739 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.73759 -40.28450 -39.06083 -36.90735 -36.28163 -35.23947 -34.70969 -33.18538 -32.14581 -31.20025 -29.03276 -28.05702 -27.22745 -25.88026 -25.25145 -24.83977 -23.42298 -22.42542 -21.37749 -21.17622 -20.42692 -18.63041 -17.82934 -17.60789 -17.42346 -17.03913 -16.89969 -16.44628 -16.25373 -16.10301 -15.80363 -15.41687 -15.34495 -15.00534 -14.92568 -14.68924 -14.53355 -14.26254 -14.19497 -13.78500 -13.58222 -13.35613 -13.14449 -13.08845 -12.91115 -12.85090 -12.66196 -12.48439 -12.40612 -12.20131 -12.11224 -12.02988 -11.99235 -11.75802 -11.69781 -11.37681 -11.31572 -11.19828 -10.80964 -10.52825 -10.45069 -10.17786 -9.75664 -8.73092 -7.87655 -5.26723 1.41724 1.48695 1.51933 1.84320 2.37432 2.48773 2.92094 3.01733 3.26306 3.43733 3.55271 3.78126 3.83545 4.00118 4.03403 4.08029 4.14589 4.15815 4.21142 4.32498 4.38325 4.42324 4.45215 4.51812 4.58035 4.61402 4.63412 4.64572 4.69671 4.75175 4.80507 4.83235 4.84414 4.97541 4.98879 5.01330 5.05928 5.09220 5.16004 5.24697 5.26736 5.29761 5.46411 5.48655 5.57208 5.67522 5.73332 6.26085 6.33356 6.45195 6.79923 7.09715 7.47759 7.78828 8.31958 9.17754 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.004518 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.070092 B = 6196.064247 C = 7528.199210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.132 4.132 4 C 0.119 3.881 5 H 0.082 0.918 6 O -0.376 6.376 7 C 0.065 3.935 8 C -0.156 4.156 9 C -0.114 4.114 10 C -0.138 4.138 11 H 0.107 0.893 12 C 0.518 3.482 13 O -0.564 6.564 14 N -0.707 5.707 15 C 0.144 3.856 16 C 0.128 3.872 17 H 0.035 0.965 18 C 0.058 3.942 19 O -0.398 6.398 20 C 0.047 3.953 21 C 0.145 3.855 22 N -0.604 5.604 23 C -0.246 4.246 24 H 0.080 0.920 25 C -0.035 4.035 26 N -0.923 5.923 27 Si 0.935 3.065 28 H -0.263 1.263 29 H -0.299 1.299 30 H -0.294 1.294 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.410 0.590 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.116 0.884 48 H 0.049 0.951 49 H 0.043 0.957 50 H 0.105 0.895 51 H 0.070 0.930 52 H 0.006 0.994 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.763 11.843 0.534 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.189 4.189 4 C 0.061 3.939 5 H 0.100 0.900 6 O -0.295 6.295 7 C -0.012 4.012 8 C -0.194 4.194 9 C -0.152 4.152 10 C -0.160 4.160 11 H 0.125 0.875 12 C 0.305 3.695 13 O -0.443 6.443 14 N -0.359 5.359 15 C 0.020 3.980 16 C 0.021 3.979 17 H 0.052 0.948 18 C -0.021 4.021 19 O -0.316 6.316 20 C -0.031 4.031 21 C 0.019 3.981 22 N -0.330 5.330 23 C -0.376 4.376 24 H 0.098 0.902 25 C -0.231 4.231 26 N -0.570 5.570 27 Si 0.765 3.235 28 H -0.188 1.188 29 H -0.225 1.225 30 H -0.221 1.221 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.116 0.884 43 H 0.074 0.926 44 H 0.247 0.753 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.134 0.866 48 H 0.067 0.933 49 H 0.061 0.939 50 H 0.123 0.877 51 H 0.089 0.911 52 H 0.024 0.976 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.400 12.086 -0.068 12.862 hybrid contribution -0.204 -1.244 1.557 2.003 sum 4.196 10.842 1.489 11.720 Atomic orbital electron populations 1.21868 0.93221 1.01865 1.03281 1.21160 0.96233 0.97160 0.96774 1.21655 1.00791 0.94212 1.02268 1.21987 0.81494 0.91406 0.99022 0.89983 1.87999 1.19136 1.78065 1.44278 1.22593 0.98758 0.90860 0.88949 1.22176 0.95938 0.99103 1.02207 1.21586 0.95948 1.00658 0.97032 1.22109 1.02958 0.97593 0.93316 0.87516 1.20639 0.83513 0.79515 0.85858 1.90656 1.26209 1.66028 1.61408 1.46294 1.24910 1.32919 1.31814 1.21010 0.95977 0.92851 0.88172 1.21505 0.95652 0.90666 0.90035 0.94774 1.22983 0.91127 0.90215 0.97765 1.87802 1.63008 1.39449 1.41349 1.23205 1.00322 0.90822 0.88761 1.21304 0.91363 0.90139 0.95272 1.44381 1.57780 1.24637 1.06202 1.19457 1.05069 1.30183 0.82872 0.90233 1.25373 0.95313 1.02901 0.99529 1.70183 1.08813 1.46696 1.31267 0.85837 0.77904 0.78723 0.81028 1.18781 1.22535 1.22097 0.90664 0.91413 0.93435 0.92686 0.93460 0.91992 0.91581 0.88541 0.91255 0.89678 0.93851 0.88427 0.92645 0.75285 0.90752 0.93657 0.86641 0.93312 0.93874 0.87704 0.91131 0.97605 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.82 71.98 0.63 -2.39 16 2 C -0.09 -2.38 2.39 -10.80 -0.03 -2.40 16 3 C -0.13 -2.79 8.99 71.98 0.65 -2.15 16 4 C 0.12 3.09 1.81 30.63 0.06 3.15 16 5 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 6 O -0.38 -11.19 8.43 -129.47 -1.09 -12.28 16 7 C 0.06 1.60 6.84 72.01 0.49 2.09 16 8 C -0.16 -4.42 5.79 30.69 0.18 -4.25 16 9 C -0.11 -3.29 5.52 30.71 0.17 -3.12 16 10 C -0.14 -4.02 2.13 -11.45 -0.02 -4.05 16 11 H 0.11 2.85 6.56 -2.38 -0.02 2.84 16 12 C 0.52 18.44 5.25 87.66 0.46 18.90 16 13 O -0.56 -23.01 13.29 16.48 0.22 -22.79 16 14 N -0.71 -26.12 3.81 -463.07 -1.76 -27.89 16 15 C 0.14 5.28 4.48 86.38 0.39 5.67 16 16 C 0.13 4.87 3.23 44.97 0.15 5.02 16 17 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 18 C 0.06 1.93 6.29 72.08 0.45 2.39 16 19 O -0.40 -14.69 10.74 -148.98 -1.60 -16.29 16 20 C 0.05 1.73 6.99 72.08 0.50 2.24 16 21 C 0.14 6.55 5.51 86.36 0.48 7.03 16 22 N -0.60 -27.34 3.06 -673.71 -2.06 -29.40 16 23 C -0.25 -11.89 7.21 84.03 0.61 -11.28 16 24 H 0.08 3.85 5.45 -2.91 -0.02 3.84 16 25 C -0.03 -1.75 4.85 84.86 0.41 -1.34 16 26 N -0.92 -49.62 11.21 21.65 0.24 -49.38 16 27 Si 0.94 41.51 29.61 68.60 2.03 43.54 16 28 H -0.26 -10.88 6.48 99.48 0.64 -10.24 16 29 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 30 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.10 6.47 -2.39 -0.02 1.08 16 34 H 0.05 1.76 6.40 -2.39 -0.02 1.75 16 35 H 0.05 1.13 7.85 -2.39 -0.02 1.11 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.04 1.52 6.94 -2.38 -0.02 1.50 16 42 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 1.91 7.51 -2.39 -0.02 1.89 16 44 H 0.41 16.17 6.98 -92.71 -0.65 15.52 16 45 H 0.07 2.51 8.06 -2.39 -0.02 2.49 16 46 H 0.05 1.81 7.63 -2.39 -0.02 1.79 16 47 H 0.12 3.14 8.14 -2.38 -0.02 3.12 16 48 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.10 3.35 8.14 -2.39 -0.02 3.34 16 51 H 0.07 3.56 6.04 -2.39 -0.01 3.54 16 52 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 53 H 0.25 13.25 8.31 -92.71 -0.77 12.47 16 Total: -1.00 -61.12 393.26 1.73 -59.39 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: 0.18 Total: 39.58 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 5.57 Total: 15.50 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -3.58 Total: -106.66 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -2.47 Total: -51.35 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -61.12 1.73 -59.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050925463.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.730 kcal (2) G-P(sol) polarization free energy of solvation -61.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds