Wall clock time and date at job start Sat Apr 11 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46940 * 2 1 4 4 C 1.53000 * 109.47513 * 119.99632 * 2 1 3 5 5 H 1.08997 * 109.47385 * 303.96983 * 4 2 1 6 6 O 1.42903 * 109.46756 * 63.96617 * 4 2 1 7 7 C 1.50703 * 109.47336 * 183.96182 * 4 2 1 8 8 O 1.21277 * 120.00096 * 269.52013 * 7 4 2 9 9 N 1.34776 * 119.99819 * 89.52273 * 7 4 2 10 10 C 1.46923 * 120.63397 * 175.73625 * 9 7 4 11 11 C 1.53186 * 108.77721 * 233.63413 * 10 9 7 12 12 C 1.53039 * 109.31287 * 305.35963 * 11 10 9 13 13 C 1.52998 * 109.46250 * 181.38510 * 12 11 10 14 14 H 1.09004 * 110.67122 * 57.03938 * 13 12 11 15 15 O 1.44382 * 110.62027 * 294.07403 * 13 12 11 16 16 C 1.43739 * 106.97358 * 201.43601 * 15 13 12 17 17 C 1.54104 * 107.29927 * 26.51285 * 16 15 13 18 18 C 1.54814 * 104.18323 * 357.96857 * 17 16 15 19 19 H 1.09000 * 110.90701 * 97.31719 * 18 17 16 20 20 N 1.46494 * 110.90781 * 220.88339 * 18 17 16 21 21 C 1.36935 * 120.00260 * 270.67132 * 20 18 17 22 22 H 1.08006 * 120.00113 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00155 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00281 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00037 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47003 * 90.00215 * 25 23 21 27 27 H 1.48499 * 109.47352 * 210.00300 * 25 23 21 28 28 H 1.48503 * 109.47430 * 330.00454 * 25 23 21 29 29 C 1.53043 * 109.53556 * 61.36972 * 12 11 10 30 30 C 1.46930 * 120.62848 * 355.76058 * 9 7 4 31 31 H 1.09001 * 109.47338 * 299.99602 * 1 2 3 32 32 H 1.08995 * 109.47245 * 59.99984 * 1 2 3 33 33 H 1.09002 * 109.46973 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47253 * 240.00029 * 2 1 3 35 35 H 1.08998 * 109.47418 * 55.24487 * 3 2 1 36 36 H 1.08999 * 109.47582 * 175.24632 * 3 2 1 37 37 H 1.09008 * 109.47124 * 295.24209 * 3 2 1 38 38 H 0.96701 * 114.00371 * 59.99949 * 6 4 2 39 39 H 1.09001 * 109.58572 * 113.83916 * 10 9 7 40 40 H 1.09008 * 109.57963 * 353.42113 * 10 9 7 41 41 H 1.08998 * 109.49694 * 185.41286 * 11 10 9 42 42 H 1.09002 * 109.52714 * 65.33115 * 11 10 9 43 43 H 1.09001 * 109.46422 * 301.36611 * 12 11 10 44 44 H 1.08999 * 109.88453 * 267.08930 * 16 15 13 45 45 H 1.09000 * 109.87985 * 145.93977 * 16 15 13 46 46 H 1.08995 * 110.49082 * 239.29400 * 17 16 15 47 47 H 1.08999 * 110.60239 * 116.69412 * 17 16 15 48 48 H 0.97005 * 120.00310 * 90.67494 * 20 18 17 49 49 H 0.96999 * 120.00496 * 179.97438 * 24 23 21 50 50 H 1.08995 * 109.49873 * 58.58370 * 29 12 11 51 51 H 1.08998 * 109.49797 * 178.68634 * 29 12 11 52 52 H 1.09001 * 109.58670 * 246.15782 * 30 9 7 53 53 H 1.09002 * 109.59076 * 6.57985 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6199 -0.2500 2.1378 6 8 1.6413 -2.0927 1.2036 7 6 3.5439 -0.6367 1.2993 8 8 4.2174 -1.5026 0.7822 9 7 4.1403 0.4011 1.9187 10 6 5.6021 0.4506 2.0573 11 6 5.9507 0.6556 3.5349 12 6 5.2275 1.8988 4.0578 13 6 5.6004 2.1266 5.5240 14 1 6.6805 2.2216 5.6361 15 8 5.0959 1.0547 6.3494 16 6 5.0231 1.5588 7.6935 17 6 4.8462 3.0868 7.6010 18 6 4.8814 3.3814 6.0815 19 1 3.8723 3.4631 5.6777 20 7 5.6534 4.5947 5.8020 21 6 5.0310 5.8143 5.7883 22 1 3.9709 5.8819 5.9840 23 6 5.7624 6.9639 5.5229 24 7 5.1642 8.1363 5.5102 25 14 7.5958 6.8471 5.1850 26 1 7.8202 6.6669 3.7281 27 1 8.2630 8.0940 5.6381 28 1 8.1618 5.6876 5.9202 29 6 3.7148 1.6976 3.9418 30 6 3.3408 1.5044 2.4688 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.6087 1.9803 0.8443 36 1 3.1266 1.4438 0.0852 37 1 1.7478 1.9311 -0.9296 38 1 1.9799 -2.5755 0.4372 39 1 5.9970 1.2798 1.4702 40 1 6.0342 -0.4867 1.7065 41 1 7.0273 0.7902 3.6394 42 1 5.6357 -0.2165 4.1079 43 1 5.5243 2.7664 3.4685 44 1 5.9437 1.3240 8.2278 45 1 4.1702 1.1175 8.2092 46 1 5.6654 3.5971 8.1076 47 1 3.8889 3.3885 8.0260 48 1 6.6055 4.5341 5.6265 49 1 5.6754 8.9396 5.3251 50 1 3.4204 0.8156 4.5106 51 1 3.1999 2.5737 4.3359 52 1 3.5512 2.4195 1.9153 53 1 2.2809 1.2625 2.3896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071053528.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:20 Heat of formation + Delta-G solvation = -143.592943 kcal Electronic energy + Delta-G solvation = -32164.074406 eV Core-core repulsion = 28034.885490 eV Total energy + Delta-G solvation = -4129.188916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.87892 -40.76333 -38.67704 -37.83215 -36.39346 -35.51713 -34.25433 -33.60393 -32.22166 -31.29485 -29.65704 -28.28267 -27.89645 -26.00455 -24.64550 -24.43604 -23.33962 -22.14649 -21.54824 -21.17023 -20.17858 -19.70903 -18.73502 -18.01746 -17.42921 -17.00237 -16.83383 -16.58264 -16.30582 -16.06196 -15.70435 -15.27540 -15.06944 -14.90686 -14.80649 -14.56272 -14.48983 -14.28395 -14.12628 -13.98534 -13.77834 -13.59279 -13.34256 -13.15830 -12.95995 -12.82459 -12.78045 -12.68218 -12.43614 -12.23233 -12.19163 -12.07258 -11.97301 -11.81394 -11.80388 -11.72246 -11.60448 -11.21898 -11.03231 -10.95080 -10.54820 -10.46605 -9.71311 -9.31447 -8.00480 -5.34647 1.39730 1.41659 1.42672 1.48896 1.89730 2.49324 2.89294 3.23097 3.30823 3.36810 3.53298 3.61202 3.66428 3.73441 3.86467 3.91463 4.07222 4.10510 4.15067 4.20853 4.24695 4.29308 4.35037 4.39071 4.44611 4.54919 4.57523 4.60544 4.75700 4.78281 4.79917 4.82732 4.88816 4.93776 4.96743 4.99757 5.01761 5.07251 5.16227 5.19423 5.23139 5.34438 5.35594 5.40846 5.48766 5.51373 5.77675 5.97215 6.23635 6.27514 6.53740 7.00091 7.07918 7.82562 8.01238 9.20561 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012789 B = 0.003215 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.795920 B = 8707.824820 C = 9455.815004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C -0.164 4.164 4 C 0.097 3.903 5 H 0.132 0.868 6 O -0.551 6.551 7 C 0.489 3.511 8 O -0.583 6.583 9 N -0.599 5.599 10 C 0.110 3.890 11 C -0.116 4.116 12 C -0.072 4.072 13 C 0.081 3.919 14 H 0.064 0.936 15 O -0.377 6.377 16 C 0.053 3.947 17 C -0.179 4.179 18 C 0.151 3.849 19 H 0.073 0.927 20 N -0.738 5.738 21 C -0.224 4.224 22 H 0.061 0.939 23 C -0.057 4.057 24 N -0.982 5.982 25 Si 0.947 3.053 26 H -0.276 1.276 27 H -0.301 1.301 28 H -0.254 1.254 29 C -0.126 4.126 30 C 0.102 3.898 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.390 0.610 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.365 0.635 49 H 0.257 0.743 50 H 0.070 0.930 51 H 0.079 0.921 52 H 0.085 0.915 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 -18.036 -8.110 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.222 4.222 4 C 0.035 3.965 5 H 0.149 0.851 6 O -0.357 6.357 7 C 0.278 3.722 8 O -0.464 6.464 9 N -0.331 5.331 10 C -0.012 4.012 11 C -0.154 4.154 12 C -0.091 4.091 13 C 0.023 3.977 14 H 0.082 0.918 15 O -0.296 6.296 16 C -0.024 4.024 17 C -0.219 4.219 18 C 0.042 3.958 19 H 0.091 0.909 20 N -0.381 5.381 21 C -0.355 4.355 22 H 0.079 0.921 23 C -0.249 4.249 24 N -0.632 5.632 25 Si 0.775 3.225 26 H -0.202 1.202 27 H -0.229 1.229 28 H -0.179 1.179 29 C -0.164 4.164 30 C -0.020 4.020 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.240 0.760 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.199 0.801 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.104 0.896 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.601 -18.405 -7.889 20.793 hybrid contribution 1.683 0.753 -0.216 1.857 sum -3.918 -17.652 -8.104 19.815 Atomic orbital electron populations 1.21757 0.92369 1.02624 1.02915 1.21677 0.98277 0.96982 0.96186 1.22265 1.00976 0.94962 1.03951 1.22175 0.88169 0.84363 1.01808 0.85092 1.86564 1.75363 1.21532 1.52238 1.21985 0.92539 0.80517 0.77116 1.90650 1.66963 1.40784 1.47987 1.48270 1.07652 1.21540 1.55682 1.21632 0.79942 1.02927 0.96715 1.21823 1.00912 0.97789 0.94846 1.21099 0.96479 0.98518 0.93011 1.23243 0.97159 0.85802 0.91536 0.91769 1.88823 1.86403 1.35631 1.18756 1.23133 1.02122 0.92696 0.84402 1.23539 1.02465 0.96182 0.99727 1.21990 0.95819 0.85293 0.92746 0.90896 1.42560 1.07303 1.02428 1.85858 1.18953 0.93768 0.84048 1.38704 0.92131 1.25389 1.02034 0.94815 1.02685 1.69864 1.37002 0.98233 1.58096 0.85540 0.81392 0.77094 0.78515 1.20197 1.22860 1.17878 1.21934 0.95338 1.02920 0.96175 1.22310 0.96401 0.89555 0.93721 0.91718 0.91306 0.92142 0.90753 0.90368 0.93044 0.91085 0.75997 0.90337 0.90240 0.89912 0.92035 0.89892 0.92020 0.88563 0.91893 0.91219 0.80136 0.93431 0.91151 0.90293 0.89642 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.08 71.98 0.65 -0.99 16 2 C -0.11 -1.60 2.70 -10.80 -0.03 -1.63 16 3 C -0.16 -2.25 7.38 71.98 0.53 -1.72 16 4 C 0.10 1.76 2.53 29.85 0.08 1.83 16 5 H 0.13 2.08 6.18 -2.39 -0.01 2.07 16 6 O -0.55 -11.06 12.70 -131.85 -1.67 -12.73 16 7 C 0.49 11.54 6.00 87.66 0.53 12.06 16 8 O -0.58 -17.78 15.86 14.11 0.22 -17.56 16 9 N -0.60 -12.73 2.41 -818.89 -1.97 -14.70 16 10 C 0.11 2.41 6.42 86.36 0.55 2.97 16 11 C -0.12 -2.58 5.26 30.67 0.16 -2.42 16 12 C -0.07 -1.78 2.11 -10.77 -0.02 -1.81 16 13 C 0.08 2.28 2.67 31.28 0.08 2.37 16 14 H 0.06 1.84 8.02 -2.38 -0.02 1.82 16 15 O -0.38 -10.42 10.09 -148.98 -1.50 -11.92 16 16 C 0.05 1.34 7.70 72.36 0.56 1.90 16 17 C -0.18 -5.50 6.76 31.59 0.21 -5.29 16 18 C 0.15 5.09 3.11 46.30 0.14 5.24 16 19 H 0.07 2.55 5.85 -2.39 -0.01 2.53 16 20 N -0.74 -31.05 5.00 -316.80 -1.58 -32.64 16 21 C -0.22 -11.75 10.45 84.03 0.88 -10.87 16 22 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 23 C -0.06 -3.19 5.50 84.86 0.47 -2.73 16 24 N -0.98 -60.17 13.97 21.65 0.30 -59.87 16 25 Si 0.95 42.99 27.73 68.60 1.90 44.90 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 28 H -0.25 -10.40 6.52 99.48 0.65 -9.75 16 29 C -0.13 -2.79 4.92 30.67 0.15 -2.64 16 30 C 0.10 1.85 4.00 86.36 0.35 2.19 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.76 7.79 -2.39 -0.02 0.74 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 0.91 6.36 -2.39 -0.02 0.90 16 36 H 0.05 0.85 5.44 -2.39 -0.01 0.84 16 37 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.39 6.44 8.63 -74.06 -0.64 5.80 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.94 7.03 -2.38 -0.02 1.92 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.06 1.54 7.94 -2.39 -0.02 1.52 16 43 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.06 2.11 8.05 -2.39 -0.02 2.09 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.37 14.92 5.61 -92.70 -0.52 14.40 16 49 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 50 H 0.07 1.65 7.64 -2.39 -0.02 1.63 16 51 H 0.08 1.89 6.10 -2.39 -0.01 1.87 16 52 H 0.09 1.50 7.50 -2.39 -0.02 1.48 16 53 H 0.11 1.52 3.92 -2.39 -0.01 1.51 16 Total: -1.00 -68.19 394.95 0.69 -67.50 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: -0.29 Total: 38.56 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.29 Total: -1.54 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -3.26 Total: -107.21 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -2.95 Total: -42.21 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.90 Total: 44.90 kcal Total: -68.19 0.69 -67.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071053528.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.093 kcal (2) G-P(sol) polarization free energy of solvation -68.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds