Wall clock time and date at job start Sat Apr 11 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46903 * 2 1 4 4 C 1.53001 * 109.47477 * 120.00337 * 2 1 3 5 5 H 1.08997 * 109.46726 * 301.12701 * 4 2 1 6 6 O 1.42904 * 109.47135 * 61.12347 * 4 2 1 7 7 C 1.50697 * 109.47298 * 181.12610 * 4 2 1 8 8 O 1.21284 * 120.00209 * 67.24524 * 7 4 2 9 9 N 1.34776 * 120.00176 * 247.25280 * 7 4 2 10 10 C 1.46491 * 120.00515 * 174.31867 * 9 7 4 11 11 H 1.09004 * 109.49794 * 35.33663 * 10 9 7 12 12 C 1.53192 * 109.49907 * 275.27096 * 10 9 7 13 13 N 1.46923 * 108.79414 * 185.35932 * 12 10 9 14 14 C 1.36936 * 120.64708 * 233.69331 * 13 12 10 15 15 H 1.08000 * 120.00336 * 142.71050 * 14 13 12 16 16 C 1.38812 * 119.99791 * 322.70737 * 14 13 12 17 17 N 1.31630 * 119.99841 * 358.03728 * 16 14 13 18 18 Si 1.86804 * 120.00120 * 178.03707 * 16 14 13 19 19 H 1.48496 * 109.47111 * 89.99936 * 18 16 14 20 20 H 1.48497 * 109.46974 * 210.00264 * 18 16 14 21 21 H 1.48495 * 109.46628 * 329.99868 * 18 16 14 22 22 C 1.46947 * 118.70915 * 53.67025 * 13 12 10 23 23 C 1.53090 * 108.78914 * 306.49467 * 22 13 12 24 24 C 1.53091 * 109.47720 * 294.30029 * 23 22 13 25 25 C 1.53103 * 109.16133 * 297.01830 * 24 23 22 26 26 O 1.42902 * 109.40467 * 302.51585 * 25 24 23 27 27 C 1.42903 * 114.13508 * 61.17743 * 26 25 24 28 28 C 1.53077 * 109.47213 * 174.62945 * 23 22 13 29 29 C 1.52937 * 109.49746 * 54.46071 * 23 22 13 30 30 H 1.08994 * 109.46958 * 299.99474 * 1 2 3 31 31 H 1.08995 * 109.47432 * 59.99863 * 1 2 3 32 32 H 1.09007 * 109.46781 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46787 * 240.00793 * 2 1 3 34 34 H 1.08998 * 109.47763 * 307.29414 * 3 2 1 35 35 H 1.09002 * 109.47299 * 67.29917 * 3 2 1 36 36 H 1.09007 * 109.47231 * 187.29592 * 3 2 1 37 37 H 0.96700 * 113.99374 * 60.00246 * 6 4 2 38 38 H 0.97002 * 119.99331 * 354.58880 * 9 7 4 39 39 H 1.08997 * 109.58035 * 305.15615 * 12 10 9 40 40 H 1.09005 * 109.58270 * 65.57079 * 12 10 9 41 41 H 0.97003 * 119.99423 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.58299 * 66.29158 * 22 13 12 43 43 H 1.09007 * 109.58213 * 186.56080 * 22 13 12 44 44 H 1.08999 * 109.52080 * 56.92179 * 24 23 22 45 45 H 1.08996 * 109.52033 * 177.11138 * 24 23 22 46 46 H 1.08999 * 109.48621 * 182.53643 * 25 24 23 47 47 H 1.09005 * 109.48540 * 62.49002 * 25 24 23 48 48 H 1.09005 * 109.48603 * 178.83598 * 27 26 25 49 49 H 1.09004 * 109.48720 * 58.79601 * 27 26 25 50 50 H 1.09007 * 109.52920 * 182.87854 * 28 23 22 51 51 H 1.08994 * 109.52585 * 303.00698 * 28 23 22 52 52 H 1.08998 * 109.45426 * 178.80995 * 29 23 22 53 53 H 1.09001 * 109.45403 * 58.86930 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6604 -0.2193 2.1390 6 8 1.5855 -2.0760 1.2360 7 6 3.5468 -0.6972 1.2632 8 8 4.1352 0.3535 1.4081 9 7 4.2406 -1.8430 1.1145 10 6 5.7008 -1.8061 1.0032 11 1 6.0939 -1.0104 1.6360 12 6 6.0961 -1.5435 -0.4534 13 7 7.5576 -1.6373 -0.5715 14 6 8.2806 -0.6127 -1.1215 15 1 9.2498 -0.3585 -0.7185 16 6 7.7678 0.0992 -2.1973 17 7 6.6040 -0.2354 -2.7132 18 14 8.7294 1.5320 -2.9127 19 1 9.6276 1.0381 -3.9871 20 1 7.7850 2.5296 -3.4766 21 1 9.5400 2.1674 -1.8429 22 6 8.2284 -2.8518 -0.0874 23 6 7.8076 -3.1027 1.3630 24 6 8.3383 -1.9742 2.2510 25 6 9.8689 -1.9850 2.2163 26 8 10.3445 -3.2627 2.6446 27 6 9.9192 -4.3505 1.8213 28 6 8.3905 -4.4352 1.8402 29 6 6.2814 -3.1496 1.4509 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.5740 1.9927 -0.8175 35 1 1.7871 1.9173 0.9481 36 1 3.1222 1.4453 -0.1305 37 1 1.8862 -2.5843 0.4702 38 1 3.7726 -2.6919 1.0773 39 1 5.6288 -2.2874 -1.0985 40 1 5.7692 -0.5457 -0.7464 41 1 6.2456 0.2623 -3.4647 42 1 7.9363 -3.7013 -0.7048 43 1 9.3089 -2.7174 -0.1385 44 1 7.9723 -1.0166 1.8807 45 1 7.9961 -2.1248 3.2748 46 1 10.2532 -1.2122 2.8821 47 1 10.2109 -1.7921 1.1994 48 1 10.3396 -5.2811 2.2025 49 1 10.2616 -4.1885 0.7992 50 1 8.0496 -4.6394 2.8553 51 1 8.0608 -5.2353 1.1775 52 1 5.9831 -3.3492 2.4801 53 1 5.9047 -3.9417 0.8038 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099578743.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:58 Heat of formation + Delta-G solvation = -148.777221 kcal Electronic energy + Delta-G solvation = -32937.288447 eV Core-core repulsion = 28807.874724 eV Total energy + Delta-G solvation = -4129.413723 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68136 -40.91271 -38.62041 -37.95831 -36.01886 -35.44079 -34.83858 -32.80879 -31.95335 -31.22916 -28.48355 -28.13362 -27.67412 -27.35079 -24.70171 -24.44171 -23.61507 -22.36578 -21.67143 -21.24022 -19.55272 -19.06813 -18.49766 -17.62646 -17.05100 -16.96966 -16.76142 -16.70880 -16.43563 -15.97516 -15.58698 -15.43620 -15.27313 -15.17353 -14.98569 -14.63068 -14.34998 -14.13440 -13.81605 -13.64527 -13.47589 -13.40293 -13.07651 -12.97391 -12.93005 -12.84924 -12.81624 -12.48503 -12.40910 -12.26267 -12.23646 -12.11986 -12.05696 -11.89730 -11.82704 -11.62505 -11.41092 -11.09064 -10.88170 -10.58651 -10.44299 -10.19638 -10.03751 -8.53037 -7.89140 -5.46492 1.40080 1.42069 1.49660 1.57800 2.15423 2.46195 3.02525 3.22055 3.28000 3.55984 3.67412 3.70594 3.77248 3.85785 3.89642 4.00202 4.20528 4.23669 4.29566 4.34509 4.38835 4.40599 4.49826 4.54497 4.60344 4.62982 4.77084 4.78250 4.81903 4.87979 4.90838 4.92661 4.97358 5.03969 5.05799 5.13006 5.16710 5.22902 5.27412 5.32878 5.35805 5.41099 5.42644 5.51940 5.52553 5.62283 5.79103 6.32234 6.34666 6.42916 6.71287 7.14880 7.30138 7.82478 8.36383 9.13947 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.004722 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.253106 B = 5927.708045 C = 8160.104342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.117 3.883 5 H 0.135 0.865 6 O -0.548 6.548 7 C 0.476 3.524 8 O -0.575 6.575 9 N -0.707 5.707 10 C 0.128 3.872 11 H 0.055 0.945 12 C 0.187 3.813 13 N -0.598 5.598 14 C -0.260 4.260 15 H 0.059 0.941 16 C -0.038 4.038 17 N -0.925 5.925 18 Si 0.957 3.043 19 H -0.279 1.279 20 H -0.297 1.297 21 H -0.272 1.272 22 C 0.154 3.846 23 C -0.067 4.067 24 C -0.130 4.130 25 C 0.066 3.934 26 O -0.397 6.397 27 C 0.054 3.946 28 C -0.131 4.131 29 C -0.095 4.095 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.032 0.968 37 H 0.390 0.610 38 H 0.411 0.589 39 H -0.001 1.001 40 H 0.041 0.959 41 H 0.247 0.753 42 H 0.018 0.982 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.095 0.905 47 H 0.040 0.960 48 H 0.116 0.884 49 H 0.045 0.955 50 H 0.081 0.919 51 H 0.089 0.911 52 H 0.078 0.922 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 -9.081 8.948 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.132 4.132 3 C -0.203 4.203 4 C 0.055 3.945 5 H 0.153 0.847 6 O -0.355 6.355 7 C 0.263 3.737 8 O -0.454 6.454 9 N -0.360 5.360 10 C 0.022 3.978 11 H 0.073 0.927 12 C 0.060 3.940 13 N -0.321 5.321 14 C -0.391 4.391 15 H 0.077 0.923 16 C -0.235 4.235 17 N -0.570 5.570 18 Si 0.785 3.215 19 H -0.205 1.205 20 H -0.223 1.223 21 H -0.197 1.197 22 C 0.029 3.971 23 C -0.070 4.070 24 C -0.167 4.167 25 C -0.010 4.010 26 O -0.316 6.316 27 C -0.022 4.022 28 C -0.169 4.169 29 C -0.133 4.133 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.240 0.760 38 H 0.249 0.751 39 H 0.017 0.983 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.036 0.964 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.058 0.942 48 H 0.134 0.866 49 H 0.063 0.937 50 H 0.099 0.901 51 H 0.107 0.893 52 H 0.096 0.904 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.531 -8.119 9.601 14.656 hybrid contribution 0.494 0.884 -1.750 2.021 sum -7.037 -7.235 7.851 12.787 Atomic orbital electron populations 1.21705 0.91478 1.03123 1.02582 1.21610 0.98630 0.96529 0.96456 1.21806 1.00466 0.95847 1.02194 1.22132 0.86473 0.84634 1.01309 0.84725 1.86581 1.76545 1.21620 1.50740 1.22105 0.92316 0.83735 0.75547 1.90717 1.72279 1.32077 1.50362 1.45922 1.07376 1.09629 1.73067 1.21588 0.79132 0.98610 0.98487 0.92682 1.20731 0.83927 0.98793 0.90544 1.43970 1.02136 1.15273 1.70730 1.19279 1.01773 1.09773 1.08261 0.92324 1.25981 0.98126 1.02427 0.96956 1.70084 1.19299 1.42154 1.25453 0.85434 0.78091 0.79304 0.78646 1.20546 1.22345 1.19718 1.21188 0.96011 0.88101 0.91834 1.20916 0.94645 0.95586 0.95806 1.22017 0.96278 0.99178 0.99268 1.22510 0.93578 0.85455 0.99503 1.87840 1.73957 1.15565 1.54209 1.22769 0.94265 0.90298 0.94856 1.22127 0.95990 0.96105 1.02715 1.21633 0.94650 0.95254 1.01754 0.91771 0.91795 0.90971 0.91413 0.91767 0.91955 0.94878 0.75971 0.75110 0.98261 0.94012 0.94345 0.96377 0.92961 0.92899 0.91339 0.88695 0.94177 0.86633 0.93669 0.90050 0.89293 0.90356 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.05 71.98 0.65 -1.68 16 2 C -0.11 -2.71 2.69 -10.79 -0.03 -2.74 16 3 C -0.15 -4.24 8.38 71.98 0.60 -3.64 16 4 C 0.12 2.82 3.07 29.85 0.09 2.91 16 5 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 6 O -0.55 -10.33 11.98 -148.98 -1.78 -12.11 16 7 C 0.48 15.90 6.95 87.66 0.61 16.51 16 8 O -0.57 -25.11 14.28 -3.04 -0.04 -25.15 16 9 N -0.71 -21.46 4.99 -442.16 -2.21 -23.67 16 10 C 0.13 4.76 2.31 45.08 0.10 4.86 16 11 H 0.06 2.43 5.81 -2.38 -0.01 2.42 16 12 C 0.19 8.87 4.78 86.36 0.41 9.29 16 13 N -0.60 -29.09 2.37 -699.24 -1.66 -30.75 16 14 C -0.26 -14.26 9.53 84.03 0.80 -13.46 16 15 H 0.06 3.18 7.83 -2.91 -0.02 3.15 16 16 C -0.04 -2.17 5.20 84.86 0.44 -1.73 16 17 N -0.93 -54.82 11.04 21.65 0.24 -54.58 16 18 Si 0.96 45.99 29.55 68.60 2.03 48.01 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 21 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 22 C 0.15 5.98 4.60 86.32 0.40 6.38 16 23 C -0.07 -2.06 0.52 -52.12 -0.03 -2.09 16 24 C -0.13 -4.27 4.37 30.66 0.13 -4.14 16 25 C 0.07 2.08 6.57 72.02 0.47 2.56 16 26 O -0.40 -11.65 10.76 -148.98 -1.60 -13.25 16 27 C 0.05 1.31 6.57 72.02 0.47 1.78 16 28 C -0.13 -3.05 4.92 30.66 0.15 -2.90 16 29 C -0.09 -2.75 4.19 30.59 0.13 -2.62 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.14 7.71 -2.38 -0.02 1.13 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.03 1.26 6.27 -2.38 -0.01 1.25 16 37 H 0.39 5.29 8.07 -74.06 -0.60 4.70 16 38 H 0.41 9.20 6.87 -92.71 -0.64 8.56 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.04 2.41 6.29 -2.38 -0.01 2.39 16 41 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.05 2.07 4.85 -2.38 -0.01 2.06 16 44 H 0.05 2.14 6.11 -2.39 -0.01 2.13 16 45 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 47 H 0.04 1.42 6.48 -2.38 -0.02 1.40 16 48 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 49 H 0.04 1.17 6.74 -2.39 -0.02 1.15 16 50 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 51 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 53 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -71.34 393.44 0.06 -71.27 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.32 Total: 30.92 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 5.41 Total: 9.29 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -3.63 Total: -108.99 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -3.43 Total: -50.52 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.34 0.06 -71.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099578743.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.502 kcal (2) G-P(sol) polarization free energy of solvation -71.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds