Wall clock time and date at job start Sat Apr 11 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47548 * 2 1 4 4 O 1.42901 * 109.47199 * 240.00143 * 2 1 3 5 5 C 1.53000 * 109.47516 * 120.00309 * 2 1 3 6 6 C 1.50707 * 109.47282 * 61.04337 * 5 2 1 7 7 O 1.21283 * 119.99483 * 1.20755 * 6 5 2 8 8 N 1.34772 * 120.00241 * 181.20194 * 6 5 2 9 9 C 1.46502 * 120.00018 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.49487 * 35.07359 * 9 8 6 11 11 C 1.53183 * 109.49891 * 275.00617 * 9 8 6 12 12 N 1.46925 * 108.82043 * 185.41430 * 11 9 8 13 13 C 1.36943 * 120.63286 * 233.57965 * 12 11 9 14 14 H 1.07994 * 119.99822 * 25.48714 * 13 12 11 15 15 C 1.38810 * 119.99618 * 205.48151 * 13 12 11 16 16 N 1.31620 * 120.00032 * 17.51603 * 15 13 12 17 17 Si 1.86794 * 119.99954 * 197.50922 * 15 13 12 18 18 H 1.48501 * 109.47175 * 60.00259 * 17 15 13 19 19 H 1.48500 * 109.47282 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47474 * 300.00290 * 17 15 13 21 21 C 1.46951 * 118.72708 * 53.60330 * 12 11 9 22 22 C 1.53089 * 108.75253 * 306.50498 * 21 12 11 23 23 C 1.53073 * 109.53609 * 174.72537 * 22 21 12 24 24 C 1.53109 * 109.16850 * 176.70997 * 23 22 21 25 25 O 1.42901 * 109.41321 * 302.53237 * 24 23 22 26 26 C 1.42908 * 114.12600 * 61.18413 * 25 24 23 27 27 C 1.53090 * 109.47730 * 294.44603 * 22 21 12 28 28 C 1.52950 * 109.48201 * 54.54964 * 22 21 12 29 29 H 1.09003 * 109.47035 * 300.00015 * 1 2 3 30 30 H 1.08999 * 109.46926 * 60.00047 * 1 2 3 31 31 H 1.08997 * 109.47045 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47167 * 184.01906 * 3 2 1 33 33 H 1.08998 * 109.46997 * 304.02071 * 3 2 1 34 34 H 1.08999 * 109.46444 * 64.01517 * 3 2 1 35 35 H 0.96710 * 113.99588 * 300.00155 * 4 2 1 36 36 H 1.09004 * 109.46838 * 301.04753 * 5 2 1 37 37 H 1.08995 * 109.47688 * 181.04712 * 5 2 1 38 38 H 0.96998 * 120.00037 * 0.02562 * 8 6 5 39 39 H 1.09002 * 109.57674 * 305.21132 * 11 9 8 40 40 H 1.08996 * 109.58093 * 65.60722 * 11 9 8 41 41 H 0.97004 * 120.00100 * 180.02562 * 16 15 13 42 42 H 1.08995 * 109.58810 * 186.72629 * 21 12 11 43 43 H 1.08991 * 109.71201 * 66.35668 * 21 12 11 44 44 H 1.09000 * 109.51949 * 296.62275 * 23 22 21 45 45 H 1.08997 * 109.51837 * 56.79820 * 23 22 21 46 46 H 1.08998 * 109.48139 * 182.55068 * 24 23 22 47 47 H 1.09001 * 109.48313 * 62.51435 * 24 23 22 48 48 H 1.08997 * 109.48580 * 178.82684 * 26 25 24 49 49 H 1.08997 * 109.48567 * 58.76993 * 26 25 24 50 50 H 1.09000 * 109.52225 * 303.13594 * 27 22 21 51 51 H 1.09000 * 109.51912 * 63.32381 * 27 22 21 52 52 H 1.09005 * 109.46451 * 178.71432 * 28 22 21 53 53 H 1.08996 * 109.45797 * 58.73930 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 1.5590 -2.1495 1.2363 7 8 0.8939 -2.5569 0.3076 8 7 1.8681 -2.9739 2.2567 9 6 1.3999 -4.3621 2.2444 10 1 1.3985 -4.7364 1.2206 11 6 -0.0202 -4.4278 2.8149 12 7 -0.4252 -5.8365 2.9168 13 6 -1.5918 -6.2702 2.3455 14 1 -2.0097 -5.7403 1.5024 15 6 -2.2369 -7.3910 2.8500 16 7 -1.9442 -7.8320 4.0551 17 14 -3.5204 -8.2731 1.8188 18 1 -2.8982 -8.7541 0.5591 19 1 -4.0569 -9.4301 2.5796 20 1 -4.6270 -7.3363 1.4980 21 6 0.4451 -6.7708 3.6441 22 6 1.8595 -6.6773 3.0659 23 6 2.8098 -7.5450 3.8950 24 6 4.2034 -7.5108 3.2617 25 8 4.1212 -7.9614 1.9081 26 6 3.2845 -7.1570 1.0744 27 6 1.8536 -7.1776 1.6191 28 6 2.3305 -5.2226 3.1025 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1277 1.4432 -0.0720 33 1 1.6192 1.9767 -0.8518 34 1 1.7367 1.9350 0.9238 35 1 1.7209 -1.5953 -1.2329 36 1 1.6615 -0.2184 2.1391 37 1 3.1299 -0.7051 1.2586 38 1 2.3998 -2.6480 2.9996 39 1 -0.0380 -3.9701 3.8040 40 1 -0.7048 -3.8979 2.1527 41 1 -2.3947 -8.6154 4.4076 42 1 0.0689 -7.7870 3.5271 43 1 0.4645 -6.5077 4.7017 44 1 2.8624 -7.1578 4.9125 45 1 2.4431 -8.5713 3.9135 46 1 4.8733 -8.1630 3.8219 47 1 4.5872 -6.4908 3.2825 48 1 3.2928 -7.5543 0.0595 49 1 3.6559 -6.1323 1.0671 50 1 1.4664 -8.1960 1.5874 51 1 1.2232 -6.5282 1.0117 52 1 3.3462 -5.1597 2.7119 53 1 2.3138 -4.8613 4.1307 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099579442.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:11 Heat of formation + Delta-G solvation = -144.304909 kcal Electronic energy + Delta-G solvation = -32729.481600 eV Core-core repulsion = 28600.261811 eV Total energy + Delta-G solvation = -4129.219789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.72538 -40.90957 -38.78938 -37.97495 -35.90195 -35.10566 -33.71183 -33.11795 -32.01858 -31.13823 -28.86534 -28.58487 -28.16689 -27.31189 -24.56757 -24.54502 -23.59464 -22.22127 -21.44505 -21.15301 -19.44961 -18.67538 -17.96130 -17.80073 -17.39590 -16.89827 -16.60502 -16.52567 -16.39935 -15.97595 -15.73363 -15.47038 -15.32019 -15.23071 -15.08201 -14.89618 -14.31178 -14.16711 -13.81408 -13.53038 -13.22264 -13.13724 -13.05722 -13.01430 -12.98788 -12.78062 -12.71490 -12.68509 -12.44319 -12.35024 -12.17958 -12.11561 -11.92804 -11.85851 -11.81755 -11.59702 -11.13927 -10.99542 -10.90289 -10.59193 -10.58815 -10.26575 -10.07285 -8.70193 -7.90610 -5.33200 1.41641 1.43987 1.50372 1.65075 2.17473 2.49261 3.03048 3.22890 3.37483 3.59108 3.64575 3.74837 3.80231 3.94542 3.98247 4.11027 4.16792 4.18969 4.23983 4.32975 4.34958 4.39951 4.52422 4.55907 4.61510 4.65288 4.75799 4.76774 4.78793 4.85887 4.90278 4.93710 4.97033 5.00494 5.03137 5.08308 5.12772 5.18532 5.27667 5.29867 5.32269 5.42636 5.46468 5.55424 5.60927 5.64727 5.77204 6.32593 6.35410 6.61454 6.77271 7.12151 7.35388 7.82961 8.30734 9.13968 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009602 B = 0.004144 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.486079 B = 6755.369335 C = 8681.961573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.136 3.864 3 C -0.135 4.135 4 O -0.585 6.585 5 C -0.161 4.161 6 C 0.509 3.491 7 O -0.578 6.578 8 N -0.708 5.708 9 C 0.141 3.859 10 H 0.068 0.932 11 C 0.145 3.855 12 N -0.600 5.600 13 C -0.258 4.258 14 H 0.054 0.946 15 C -0.041 4.041 16 N -0.927 5.927 17 Si 0.955 3.045 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.190 3.810 22 C -0.071 4.071 23 C -0.137 4.137 24 C 0.063 3.937 25 O -0.401 6.401 26 C 0.069 3.931 27 C -0.128 4.128 28 C -0.099 4.099 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.382 0.618 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.415 0.585 39 H 0.018 0.982 40 H 0.031 0.969 41 H 0.250 0.750 42 H 0.057 0.943 43 H -0.001 1.001 44 H 0.085 0.915 45 H 0.052 0.948 46 H 0.109 0.891 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.062 0.938 50 H 0.038 0.962 51 H 0.059 0.941 52 H 0.085 0.915 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.536 13.474 -0.326 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.095 3.905 3 C -0.192 4.192 4 O -0.396 6.396 5 C -0.200 4.200 6 C 0.297 3.703 7 O -0.459 6.459 8 N -0.359 5.359 9 C 0.035 3.965 10 H 0.086 0.914 11 C 0.018 3.982 12 N -0.322 5.322 13 C -0.388 4.388 14 H 0.072 0.928 15 C -0.236 4.236 16 N -0.574 5.574 17 Si 0.784 3.216 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.205 1.205 21 C 0.065 3.935 22 C -0.073 4.073 23 C -0.175 4.175 24 C -0.013 4.013 25 O -0.320 6.320 26 C -0.007 4.007 27 C -0.166 4.166 28 C -0.137 4.137 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.235 0.765 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.252 0.748 39 H 0.036 0.964 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.017 0.983 44 H 0.103 0.897 45 H 0.070 0.930 46 H 0.127 0.873 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.080 0.920 50 H 0.057 0.943 51 H 0.078 0.922 52 H 0.103 0.897 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.340 13.469 -1.057 20.441 hybrid contribution -1.871 -1.133 0.164 2.194 sum 13.469 12.336 -0.893 18.286 Atomic orbital electron populations 1.22658 0.96447 1.02973 1.02497 1.21094 0.92587 0.93243 0.83550 1.21789 1.02118 0.91787 1.03548 1.86367 1.77398 1.30900 1.44918 1.22510 1.04804 0.90628 1.02092 1.21306 0.78610 0.88891 0.81453 1.90576 1.40759 1.77798 1.36805 1.45956 1.54795 1.11130 1.24011 1.21275 0.94029 0.81164 1.00078 0.91426 1.21214 0.94386 0.85801 0.96783 1.44121 1.21267 1.03369 1.63491 1.19299 1.00377 1.10785 1.08380 0.92842 1.25531 1.00224 1.01522 0.96370 1.70139 1.45767 1.26045 1.15399 0.85524 0.79440 0.78205 0.78440 1.20831 1.21531 1.20528 1.20695 0.86776 0.94770 0.91272 1.20986 0.96431 0.94728 0.95179 1.22106 0.95845 0.99640 0.99908 1.22745 0.95656 1.00996 0.81928 1.87865 1.67740 1.54854 1.21518 1.22586 0.88604 0.95418 0.94135 1.22003 0.97413 1.00341 0.96841 1.21737 0.98427 0.93348 1.00199 0.90710 0.92603 0.92629 0.91242 0.92299 0.88740 0.76548 0.85266 0.85863 0.74773 0.96423 0.95071 0.94046 0.92464 0.98296 0.89666 0.92958 0.87274 0.91281 0.88852 0.92018 0.94285 0.92229 0.89676 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.34 8.51 71.98 0.61 -3.73 16 2 C 0.14 2.75 1.11 -10.79 -0.01 2.74 16 3 C -0.14 -1.95 8.84 71.98 0.64 -1.31 16 4 O -0.58 -15.54 12.94 -130.71 -1.69 -17.23 16 5 C -0.16 -2.57 4.97 29.85 0.15 -2.42 16 6 C 0.51 12.54 7.30 87.66 0.64 13.18 16 7 O -0.58 -19.40 11.38 15.23 0.17 -19.22 16 8 N -0.71 -16.08 5.08 -442.13 -2.25 -18.33 16 9 C 0.14 4.43 2.27 45.07 0.10 4.53 16 10 H 0.07 2.52 5.72 -2.38 -0.01 2.51 16 11 C 0.15 6.00 6.09 86.36 0.53 6.53 16 12 N -0.60 -29.58 2.51 -699.27 -1.75 -31.33 16 13 C -0.26 -14.47 9.61 84.03 0.81 -13.67 16 14 H 0.05 3.07 7.88 -2.91 -0.02 3.04 16 15 C -0.04 -2.29 4.93 84.86 0.42 -1.87 16 16 N -0.93 -54.25 11.03 21.65 0.24 -54.01 16 17 Si 0.96 46.01 29.59 68.60 2.03 48.04 16 18 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 19 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 21 C 0.19 8.72 4.01 86.32 0.35 9.06 16 22 C -0.07 -2.40 0.51 -52.11 -0.03 -2.43 16 23 C -0.14 -3.90 4.92 30.65 0.15 -3.74 16 24 C 0.06 1.45 6.57 72.02 0.47 1.92 16 25 O -0.40 -11.49 10.76 -148.98 -1.60 -13.09 16 26 C 0.07 1.96 6.57 72.02 0.47 2.44 16 27 C -0.13 -4.59 4.48 30.66 0.14 -4.46 16 28 C -0.10 -2.69 3.64 30.60 0.11 -2.58 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.66 5.65 -2.39 -0.01 1.65 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.38 11.04 6.40 -74.05 -0.47 10.56 16 36 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.42 6.21 8.60 -92.71 -0.80 5.41 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.03 1.42 7.92 -2.39 -0.02 1.40 16 41 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 42 H 0.06 3.08 5.87 -2.39 -0.01 3.07 16 43 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.07 1.30 6.59 -2.39 -0.02 1.29 16 48 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 49 H 0.06 1.55 6.64 -2.39 -0.02 1.54 16 50 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.06 2.42 5.91 -2.39 -0.01 2.40 16 52 H 0.08 1.87 5.03 -2.38 -0.01 1.86 16 53 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -70.88 391.60 0.34 -70.54 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.35 Total: 30.43 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 5.55 Total: 4.20 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -3.76 Total: -103.67 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -3.12 Total: -49.54 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -70.88 0.34 -70.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099579442.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.765 kcal (2) G-P(sol) polarization free energy of solvation -70.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds