Wall clock time and date at job start Sat Apr 11 2020 06:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 120.00073 * 2 1 4 4 C 1.52998 * 109.47180 * 124.99980 * 3 2 1 5 5 O 1.42903 * 109.47281 * 179.97438 * 4 3 2 6 6 C 1.42896 * 113.99909 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.46902 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47192 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47192 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47099 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00385 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00165 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00539 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.45341 * 35.00040 * 13 12 10 15 15 C 1.53042 * 109.45995 * 275.03021 * 13 12 10 16 16 C 1.53163 * 109.32625 * 301.35145 * 15 13 12 17 17 N 1.46922 * 108.76951 * 305.36219 * 16 15 13 18 18 C 1.36947 * 120.62813 * 233.58578 * 17 16 15 19 19 H 1.07998 * 119.99965 * 152.30374 * 18 17 16 20 20 C 1.38809 * 119.99859 * 332.30525 * 18 17 16 21 21 N 1.31612 * 120.00208 * 342.60309 * 20 18 17 22 22 Si 1.86800 * 119.99931 * 162.60032 * 20 18 17 23 23 H 1.48498 * 109.47185 * 94.34734 * 22 20 18 24 24 H 1.48499 * 109.47426 * 214.35258 * 22 20 18 25 25 H 1.48503 * 109.46896 * 334.34861 * 22 20 18 26 26 C 1.46923 * 118.74480 * 53.60473 * 17 16 15 27 27 C 1.53037 * 109.46074 * 154.97045 * 13 12 10 28 28 H 1.08999 * 109.49824 * 178.61059 * 27 13 12 29 29 O 1.42902 * 109.49926 * 298.67493 * 27 13 12 30 30 H 1.08000 * 120.00067 * 0.02562 * 1 2 3 31 31 H 1.08007 * 120.00042 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.00141 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47232 * 4.99747 * 3 2 1 34 34 H 1.09000 * 109.46921 * 244.99505 * 3 2 1 35 35 H 1.08998 * 109.47693 * 59.99523 * 4 3 2 36 36 H 1.09007 * 109.47171 * 299.99654 * 4 3 2 37 37 H 1.09001 * 109.47198 * 60.00427 * 6 5 4 38 38 H 1.08996 * 109.47449 * 299.99942 * 6 5 4 39 39 H 1.08996 * 109.46884 * 300.00120 * 7 6 5 40 40 H 1.09001 * 109.46983 * 60.00127 * 7 6 5 41 41 H 1.08996 * 109.47264 * 299.99838 * 8 7 6 42 42 H 1.09001 * 109.47092 * 60.00145 * 8 7 6 43 43 H 1.08996 * 109.46884 * 300.00072 * 9 8 7 44 44 H 1.09001 * 109.46983 * 60.00078 * 9 8 7 45 45 H 0.97004 * 119.99501 * 0.02562 * 12 10 9 46 46 H 1.09001 * 109.50063 * 61.29543 * 15 13 12 47 47 H 1.09008 * 109.49311 * 181.39129 * 15 13 12 48 48 H 1.08998 * 109.59211 * 185.57152 * 16 15 13 49 49 H 1.09005 * 109.59021 * 65.14545 * 16 15 13 50 50 H 0.97000 * 120.00475 * 180.02562 * 21 20 18 51 51 H 1.08997 * 109.59029 * 186.60357 * 26 17 16 52 52 H 1.09008 * 109.70051 * 66.24868 * 26 17 16 53 53 H 0.96701 * 114.00206 * 180.02562 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7499 2.5704 1.1813 6 6 4.6886 2.6995 2.2509 7 6 5.3913 4.0551 2.1519 8 6 6.3968 4.1931 3.2968 9 6 7.0990 5.5489 3.1982 10 6 8.0898 5.6846 4.3255 11 8 8.2211 4.7857 5.1290 12 7 8.8294 6.8054 4.4414 13 6 9.7922 6.9376 5.5376 14 1 10.2351 5.9647 5.7511 15 6 9.0752 7.4565 6.7861 16 6 8.4248 8.8072 6.4726 17 7 9.4522 9.7157 5.9456 18 6 9.6502 10.9476 6.5101 19 1 10.6221 11.4156 6.4580 20 6 8.6016 11.5948 7.1492 21 7 7.3612 11.2133 6.9297 22 14 8.9509 13.0071 8.3208 23 1 8.8497 14.2947 7.5881 24 1 7.9613 12.9883 9.4278 25 1 10.3197 12.8609 8.8781 26 6 10.2630 9.2777 4.8013 27 6 10.8928 7.9213 5.1336 28 1 11.5960 8.0390 5.9580 29 8 11.5822 7.4209 3.9863 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9354 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 3.7399 0.5065 1.0922 36 1 2.4771 1.2356 2.1131 37 1 5.4276 1.9011 2.1842 38 1 4.1648 2.6311 3.2043 39 1 5.9151 4.1240 1.1986 40 1 4.6520 4.8533 2.2189 41 1 5.8734 4.1241 4.2504 42 1 7.1360 3.3949 3.2294 43 1 7.6223 5.6185 2.2446 44 1 6.3595 6.3469 3.2658 45 1 8.7236 7.5248 3.7993 46 1 8.3070 6.7441 7.0870 47 1 9.7957 7.5786 7.5950 48 1 7.9977 9.2274 7.3832 49 1 7.6406 8.6712 5.7278 50 1 6.6284 11.6658 7.3760 51 1 11.0488 10.0082 4.6092 52 1 9.6307 9.1805 3.9187 53 1 12.2953 7.9949 3.6746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099832052.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:16 Heat of formation + Delta-G solvation = -113.927144 kcal Electronic energy + Delta-G solvation = -29439.889650 eV Core-core repulsion = 25311.987140 eV Total energy + Delta-G solvation = -4127.902510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.83512 -38.53942 -37.95554 -35.71730 -35.44641 -34.57238 -33.95929 -31.79752 -30.67241 -29.99795 -28.93735 -28.32806 -25.42562 -24.22587 -23.28674 -22.32916 -21.91175 -21.35695 -20.26114 -20.18986 -18.70348 -17.19344 -16.90721 -16.81297 -16.67094 -16.43636 -15.86644 -15.50332 -15.17759 -14.94525 -14.78971 -14.31492 -14.28180 -13.88225 -13.77097 -13.61555 -13.29390 -13.03648 -12.73601 -12.58972 -12.31330 -12.03284 -11.98805 -11.80197 -11.70706 -11.59083 -11.43976 -11.33258 -11.19218 -11.05994 -10.89773 -10.70269 -10.67924 -10.40008 -10.22132 -9.96999 -9.87076 -9.84023 -9.78698 -9.44236 -9.43018 -8.58574 -8.51443 -6.79674 -5.89265 -3.33081 1.79853 3.02023 3.29185 3.31423 3.39477 3.41212 3.65087 4.35123 4.50200 4.51592 4.64773 4.73363 4.78201 4.84439 4.89472 5.05614 5.08736 5.18164 5.21810 5.25822 5.27091 5.32289 5.41393 5.44955 5.53764 5.57568 5.59237 5.65794 5.66795 5.69539 5.72960 5.82784 5.96959 6.06499 6.15908 6.17546 6.25195 6.28351 6.30175 6.43783 6.54824 6.64051 6.69169 6.95021 6.98358 7.26041 7.56941 7.69517 7.90595 7.93587 8.33469 8.62110 9.09233 9.71688 10.26923 11.18915 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.001707 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.583459 B =16396.299825 C =17567.736386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C -0.094 4.094 4 C 0.066 3.934 5 O -0.391 6.391 6 C 0.063 3.937 7 C -0.118 4.118 8 C -0.099 4.099 9 C -0.140 4.140 10 C 0.513 3.487 11 O -0.555 6.555 12 N -0.706 5.706 13 C 0.166 3.834 14 H 0.077 0.923 15 C -0.153 4.153 16 C 0.172 3.828 17 N -0.587 5.587 18 C -0.260 4.260 19 H 0.066 0.934 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.119 3.881 27 C 0.075 3.925 28 H 0.065 0.935 29 O -0.571 6.571 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.402 0.598 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.022 0.978 50 H 0.255 0.745 51 H 0.058 0.942 52 H 0.023 0.977 53 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 -17.277 -12.074 21.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.010 4.010 5 O -0.311 6.311 6 C -0.013 4.013 7 C -0.156 4.156 8 C -0.137 4.137 9 C -0.180 4.180 10 C 0.299 3.701 11 O -0.434 6.434 12 N -0.357 5.357 13 C 0.061 3.939 14 H 0.095 0.905 15 C -0.193 4.193 16 C 0.047 3.953 17 N -0.311 5.311 18 C -0.389 4.389 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.204 1.204 26 C -0.009 4.009 27 C 0.015 3.985 28 H 0.083 0.917 29 O -0.375 6.375 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.237 0.763 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.107 0.893 49 H 0.040 0.960 50 H 0.065 0.935 51 H 0.077 0.923 52 H 0.040 0.960 53 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.997 -18.172 -11.483 22.317 hybrid contribution 0.479 1.405 0.463 1.555 sum -5.518 -16.767 -11.020 20.809 Atomic orbital electron populations 1.23917 0.95900 1.02102 1.00564 1.22814 0.96041 0.98053 1.00396 1.20660 0.97977 0.95864 0.98601 1.22396 0.93915 0.86508 0.98210 1.87847 1.55301 1.37448 1.50501 1.22526 0.91083 0.98151 0.89564 1.21541 0.98310 0.96165 0.99592 1.21203 0.97691 0.96394 0.98413 1.21632 0.98368 0.99870 0.98130 1.20564 0.81382 0.81879 0.86249 1.90653 1.68200 1.40334 1.44193 1.45972 1.40178 1.18923 1.30622 1.20798 0.87734 0.98315 0.87075 0.90496 1.22581 1.00409 1.00452 0.95885 1.20784 0.89350 0.85507 0.99684 1.44005 1.40275 1.14999 1.31792 1.19156 0.94359 0.94363 1.31060 0.91604 1.25038 0.94927 0.98025 1.01290 1.70027 0.97692 1.43025 1.43514 0.86281 0.77603 0.82045 0.80822 1.21390 1.21471 1.20361 1.21527 0.95167 0.93024 0.91153 1.22749 0.93000 0.95057 0.87735 0.91699 1.86481 1.51756 1.51053 1.48252 0.88375 0.88299 0.87204 0.90603 0.90107 0.93313 0.93264 0.93265 0.93175 0.91064 0.90896 0.90971 0.91143 0.89054 0.88716 0.76274 0.91892 0.91595 0.89279 0.96038 0.93489 0.92336 0.95977 0.78034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.08 14.32 29.02 0.42 -0.66 16 2 C -0.15 -0.96 9.52 -36.02 -0.34 -1.30 16 3 C -0.09 -0.67 6.03 -27.88 -0.17 -0.84 16 4 C 0.07 0.54 5.92 37.16 0.22 0.76 16 5 O -0.39 -4.12 10.34 -35.23 -0.36 -4.49 16 6 C 0.06 0.60 5.94 37.16 0.22 0.82 16 7 C -0.12 -1.15 5.58 -26.73 -0.15 -1.30 16 8 C -0.10 -1.11 4.50 -26.73 -0.12 -1.23 16 9 C -0.14 -1.67 5.70 -27.88 -0.16 -1.83 16 10 C 0.51 8.31 7.79 -10.99 -0.09 8.22 16 11 O -0.55 -10.75 15.65 5.55 0.09 -10.67 16 12 N -0.71 -11.66 4.15 -53.77 -0.22 -11.88 16 13 C 0.17 2.96 2.47 -67.89 -0.17 2.80 16 14 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 15 C -0.15 -2.99 5.77 -26.63 -0.15 -3.15 16 16 C 0.17 3.95 5.05 -3.73 -0.02 3.93 16 17 N -0.59 -13.73 2.99 -172.34 -0.52 -14.25 16 18 C -0.26 -6.79 9.58 -15.06 -0.14 -6.93 16 19 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 20 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 21 N -0.90 -25.17 11.19 55.49 0.62 -24.55 16 22 Si 0.90 20.98 29.59 -169.99 -5.03 15.95 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 C 0.12 2.26 5.84 -3.71 -0.02 2.24 16 27 C 0.08 1.27 3.36 -26.61 -0.09 1.18 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 29 O -0.57 -8.46 13.21 -35.23 -0.47 -8.93 16 30 H 0.10 0.54 7.84 -52.49 -0.41 0.12 16 31 H 0.10 0.45 8.06 -52.48 -0.42 0.03 16 32 H 0.11 0.57 8.06 -52.48 -0.42 0.15 16 33 H 0.08 0.56 7.79 -51.93 -0.40 0.16 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.40 6.33 6.87 -40.82 -0.28 6.05 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 48 H 0.09 2.33 6.04 -51.93 -0.31 2.01 16 49 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 50 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 51 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 52 H 0.02 0.42 6.65 -51.92 -0.35 0.08 16 53 H 0.37 3.94 9.09 45.56 0.41 4.35 16 LS Contribution 424.47 15.07 6.40 6.40 Total: -1.00 -31.39 424.47 -9.20 -40.59 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -8.86 Total: 9.02 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.85 Total: 2.80 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.12 Total: -50.68 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.74 Total: -24.08 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -31.39 -9.20 -40.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099832052.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.333 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds