Wall clock time and date at job start Sat Apr 11 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46989 * 2 1 4 4 C 1.53001 * 109.47225 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.46947 * 180.02562 * 4 3 2 6 6 C 1.46498 * 119.99813 * 264.99373 * 5 4 3 7 7 C 1.53007 * 109.47466 * 261.76004 * 6 5 4 8 8 O 1.42901 * 109.47089 * 65.00007 * 7 6 5 9 9 C 1.42891 * 114.00205 * 180.02562 * 8 7 6 10 10 C 1.34777 * 120.00184 * 84.99940 * 5 4 3 11 11 O 1.21345 * 119.99692 * 1.83120 * 10 5 4 12 12 C 1.49453 * 120.00013 * 181.83429 * 10 5 4 13 13 O 1.21349 * 119.99791 * 7.26113 * 12 10 5 14 14 N 1.34770 * 119.99906 * 186.98224 * 12 10 5 15 15 C 1.46933 * 120.63196 * 357.33022 * 14 12 10 16 16 C 1.53190 * 108.77347 * 126.36571 * 15 14 12 17 17 C 1.53043 * 109.31000 * 54.63940 * 16 15 14 18 18 C 1.53035 * 109.53814 * 298.62811 * 17 16 15 19 19 H 1.09000 * 109.50454 * 301.41846 * 18 17 16 20 20 C 1.50697 * 109.49763 * 181.31670 * 18 17 16 21 21 H 1.08003 * 120.00362 * 0.02562 * 20 18 17 22 22 C 1.37880 * 120.00238 * 179.97438 * 20 18 17 23 23 N 1.31520 * 119.99581 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 120.00436 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46588 * 90.00568 * 24 22 20 26 26 H 1.48493 * 109.47210 * 210.00342 * 24 22 20 27 27 H 1.48496 * 109.47036 * 330.00862 * 24 22 20 28 28 C 1.46922 * 120.62968 * 177.05210 * 14 12 10 29 29 H 1.08989 * 109.47300 * 300.00237 * 1 2 3 30 30 H 1.09006 * 109.47029 * 60.00356 * 1 2 3 31 31 H 1.09000 * 109.46730 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47601 * 240.00212 * 2 1 3 33 33 H 1.08997 * 109.47205 * 119.99443 * 2 1 3 34 34 H 1.09003 * 109.46775 * 59.99707 * 3 2 1 35 35 H 1.08997 * 109.46692 * 299.99757 * 3 2 1 36 36 H 1.08998 * 109.46752 * 59.99759 * 4 3 2 37 37 H 1.08999 * 109.46729 * 300.00379 * 4 3 2 38 38 H 1.09004 * 109.47582 * 21.76068 * 6 5 4 39 39 H 1.08995 * 109.47364 * 141.76088 * 6 5 4 40 40 H 1.08991 * 109.47357 * 185.00318 * 7 6 5 41 41 H 1.09000 * 109.46862 * 305.00170 * 7 6 5 42 42 H 1.09007 * 109.47197 * 60.00264 * 9 8 7 43 43 H 1.09004 * 109.47547 * 179.97438 * 9 8 7 44 44 H 1.08998 * 109.47335 * 299.99974 * 9 8 7 45 45 H 1.08996 * 109.58357 * 246.15961 * 15 14 12 46 46 H 1.09001 * 109.58647 * 6.58169 * 15 14 12 47 47 H 1.09003 * 109.49674 * 174.58539 * 16 15 14 48 48 H 1.08995 * 109.50000 * 294.68735 * 16 15 14 49 49 H 1.08995 * 109.46459 * 58.65341 * 17 16 15 50 50 H 1.09004 * 109.45714 * 178.61435 * 17 16 15 51 51 H 0.97008 * 119.99960 * 179.97438 * 23 22 20 52 52 H 1.08998 * 109.59036 * 353.41693 * 28 14 12 53 53 H 1.09000 * 109.59042 * 113.84864 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 7 4.0582 2.8239 0.0013 6 6 4.4072 3.4779 -1.2623 7 6 5.9207 3.4034 -1.4742 8 8 6.3127 2.0386 -1.6342 9 6 7.7152 1.8568 -1.8388 10 6 4.1864 3.4928 1.1643 11 8 3.9291 2.9402 2.2135 12 6 4.6454 4.9151 1.1615 13 8 4.7759 5.5085 0.1111 14 7 4.9088 5.5404 2.3260 15 6 4.6939 4.8562 3.6085 16 6 5.9873 4.9244 4.4264 17 6 6.4261 6.3846 4.5588 18 6 6.7022 6.9640 3.1696 19 1 7.4755 6.3748 2.6767 20 6 7.1651 8.3918 3.3030 21 1 7.2542 8.8416 4.2809 22 6 7.4761 9.1239 2.1768 23 7 7.3682 8.5762 0.9860 24 14 8.0493 10.8941 2.3421 25 1 9.5287 10.9256 2.4679 26 1 7.6384 11.6619 1.1393 27 1 7.4367 11.5019 3.5506 28 6 5.4221 6.9170 2.3371 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9287 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 3.9000 2.9736 -2.0848 39 1 4.0960 4.5220 -1.2291 40 1 6.1906 3.9661 -2.3678 41 1 6.4300 3.8288 -0.6094 42 1 8.2614 2.2499 -0.9812 43 1 7.9314 0.7943 -1.9507 44 1 8.0227 2.3874 -2.7398 45 1 3.8895 5.3486 4.1549 46 1 4.4307 3.8141 3.4271 47 1 5.8134 4.5055 5.4176 48 1 6.7674 4.3544 3.9218 49 1 5.6354 6.9591 5.0413 50 1 7.3329 6.4380 5.1613 51 1 7.5866 9.0913 0.1935 52 1 5.6394 7.2342 1.3171 53 1 4.6784 7.5808 2.7778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118510010.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:27 Heat of formation + Delta-G solvation = -120.792230 kcal Electronic energy + Delta-G solvation = -32054.172423 eV Core-core repulsion = 27925.972221 eV Total energy + Delta-G solvation = -4128.200203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.17212 -40.00374 -39.06423 -38.47335 -37.34704 -35.54655 -35.07491 -33.45528 -31.67511 -31.33624 -29.79294 -27.63672 -27.21314 -26.78581 -25.30540 -24.25788 -23.57282 -22.90734 -22.01627 -21.02408 -20.10467 -18.67824 -18.16240 -17.96302 -17.48703 -17.30624 -16.87807 -16.64006 -16.44590 -16.25526 -15.91180 -15.62682 -15.45420 -15.28390 -14.87940 -14.67667 -14.54165 -14.39513 -14.03355 -13.89297 -13.67770 -13.56324 -13.47781 -13.10074 -12.94699 -12.89066 -12.87480 -12.45976 -12.31527 -12.29558 -12.23875 -12.14099 -12.00007 -11.91116 -11.72669 -11.42848 -11.33002 -11.07279 -10.94789 -10.70527 -10.54529 -10.01585 -9.74484 -9.51779 -8.12557 -6.28557 0.36525 1.31096 1.41910 1.42197 1.52496 2.15153 2.37424 2.43796 2.81539 3.10802 3.17608 3.92000 3.97592 4.07972 4.12313 4.14523 4.16382 4.21403 4.33575 4.36845 4.40836 4.49067 4.53767 4.57263 4.60878 4.66767 4.72163 4.75861 4.79624 4.80534 4.83899 4.88595 4.96296 4.99099 5.05689 5.11283 5.17995 5.22105 5.27723 5.30803 5.36608 5.42160 5.49978 5.55367 5.60640 5.83887 5.90999 5.95141 6.14503 6.28274 6.42272 6.71814 6.82460 7.00810 7.40880 8.91332 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012991 B = 0.003278 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.747702 B = 8539.352783 C = 9578.683542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.129 4.129 4 C 0.117 3.883 5 N -0.566 5.566 6 C 0.098 3.902 7 C 0.056 3.944 8 O -0.399 6.399 9 C 0.027 3.973 10 C 0.512 3.488 11 O -0.522 6.522 12 C 0.486 3.514 13 O -0.543 6.543 14 N -0.573 5.573 15 C 0.047 3.953 16 C -0.122 4.122 17 C -0.107 4.107 18 C 0.041 3.959 19 H -0.012 1.012 20 C -0.536 4.536 21 H 0.061 0.939 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.957 3.043 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.265 1.265 28 C 0.123 3.877 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.070 0.930 41 H 0.019 0.981 42 H 0.027 0.973 43 H 0.107 0.893 44 H 0.050 0.950 45 H 0.070 0.930 46 H 0.156 0.844 47 H 0.097 0.903 48 H 0.044 0.956 49 H 0.056 0.944 50 H 0.053 0.947 51 H 0.262 0.738 52 H 0.089 0.911 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.862 -17.566 -4.762 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.168 4.168 4 C -0.004 4.004 5 N -0.296 5.296 6 C -0.024 4.024 7 C -0.022 4.022 8 O -0.318 6.318 9 C -0.069 4.069 10 C 0.296 3.704 11 O -0.402 6.402 12 C 0.269 3.731 13 O -0.422 6.422 14 N -0.305 5.305 15 C -0.073 4.073 16 C -0.160 4.160 17 C -0.145 4.145 18 C 0.022 3.978 19 H 0.006 0.994 20 C -0.575 4.575 21 H 0.079 0.921 22 C -0.186 4.186 23 N -0.550 5.550 24 Si 0.783 3.217 25 H -0.202 1.202 26 H -0.210 1.210 27 H -0.190 1.190 28 C 0.001 3.999 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.037 0.963 42 H 0.045 0.955 43 H 0.125 0.875 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.172 0.828 47 H 0.115 0.885 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.071 0.929 52 H 0.107 0.893 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.040 -17.658 -4.952 20.446 hybrid contribution 1.038 1.752 0.002 2.036 sum -8.002 -15.906 -4.950 18.480 Atomic orbital electron populations 1.21757 0.95331 1.02134 1.01669 1.21413 0.96289 0.94909 1.02794 1.21936 0.94208 0.98572 1.02038 1.21810 0.94488 0.79776 1.04317 1.47888 1.61392 1.14651 1.05693 1.22392 0.93304 1.01633 0.85084 1.22851 0.96219 0.83138 0.99955 1.87784 1.24821 1.25636 1.93545 1.22875 0.80852 1.03521 0.99638 1.20110 0.78792 0.86812 0.84697 1.90218 1.51366 1.69020 1.29577 1.20411 0.80011 0.88139 0.84544 1.90594 1.53289 1.67859 1.30501 1.48497 1.60028 1.15595 1.06341 1.23385 0.97783 1.03428 0.82751 1.21864 0.96760 0.96687 1.00714 1.21564 1.00267 0.95263 0.97398 1.18806 0.91799 0.95067 0.92172 0.99371 1.21457 1.45078 0.97898 0.93026 0.92115 1.25839 0.95297 1.02397 0.95064 1.70038 1.48696 1.38098 0.98145 0.85563 0.78524 0.79886 0.77742 1.20211 1.21031 1.18955 1.21852 0.95279 0.78524 1.04226 0.93483 0.92515 0.91704 0.90484 0.91886 0.93429 0.91161 0.87618 0.90804 0.86649 0.86336 0.91148 0.96275 0.95473 0.87459 0.93102 0.91210 0.82796 0.88470 0.93667 0.92521 0.92863 0.92915 0.89256 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.65 5.93 30.60 0.18 -1.47 16 3 C -0.13 -2.39 5.51 30.60 0.17 -2.23 16 4 C 0.12 2.49 5.34 86.38 0.46 2.95 16 5 N -0.57 -15.61 2.45 -823.40 -2.02 -17.63 16 6 C 0.10 2.54 5.37 86.38 0.46 3.01 16 7 C 0.06 1.60 5.74 71.98 0.41 2.01 16 8 O -0.40 -10.25 10.65 -148.98 -1.59 -11.83 16 9 C 0.03 0.58 11.01 113.37 1.25 1.83 16 10 C 0.51 17.49 7.52 87.27 0.66 18.15 16 11 O -0.52 -18.01 12.67 -3.23 -0.04 -18.05 16 12 C 0.49 19.93 7.21 87.27 0.63 20.56 16 13 O -0.54 -24.10 11.68 -3.24 -0.04 -24.14 16 14 N -0.57 -24.46 2.98 -821.31 -2.45 -26.91 16 15 C 0.05 1.67 6.25 86.36 0.54 2.21 16 16 C -0.12 -4.25 6.08 30.67 0.19 -4.07 16 17 C -0.11 -4.41 5.11 30.62 0.16 -4.25 16 18 C 0.04 2.08 2.24 -11.61 -0.03 2.06 16 19 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 20 C -0.54 -29.44 8.56 25.60 0.22 -29.22 16 21 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 22 C 0.01 0.76 5.31 84.65 0.45 1.21 16 23 N -0.91 -53.37 11.39 21.45 0.24 -53.13 16 24 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 28 C 0.12 6.13 5.37 86.22 0.46 6.59 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.11 1.89 8.03 -2.39 -0.02 1.87 16 37 H 0.07 1.72 7.55 -2.39 -0.02 1.70 16 38 H 0.12 2.21 8.00 -2.39 -0.02 2.19 16 39 H 0.12 3.64 5.28 -3.18 -0.02 3.62 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.02 0.69 7.11 -2.39 -0.02 0.67 16 42 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.16 5.36 3.76 -83.50 -0.31 5.05 16 47 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 48 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 50 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 51 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 52 H 0.09 5.13 5.13 -2.39 -0.01 5.11 16 53 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -65.41 412.59 3.62 -61.79 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.56 Total: 26.26 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 6.92 Total: 18.03 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -4.22 Total: -97.66 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -1.67 Total: -54.02 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -65.41 3.62 -61.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118510010.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.004 kcal (2) G-P(sol) polarization free energy of solvation -65.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds