Wall clock time and date at job start Sat Apr 11 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00398 * 2 1 4 4 C 1.53005 * 109.47079 * 239.99750 * 3 2 1 5 5 C 1.53003 * 109.46957 * 120.00014 * 3 2 1 6 6 C 1.53000 * 109.47334 * 60.00311 * 5 3 2 7 7 O 1.42898 * 109.47134 * 180.02562 * 6 5 3 8 8 C 1.42902 * 113.99798 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47035 * 359.97438 * 3 2 1 10 10 O 1.21290 * 119.99994 * 119.99838 * 9 3 2 11 11 N 1.34770 * 120.00234 * 300.00000 * 9 3 2 12 12 C 1.46505 * 120.00516 * 180.02562 * 11 9 3 13 13 C 1.52994 * 109.47472 * 179.97438 * 12 11 9 14 14 H 1.09005 * 108.56788 * 62.05548 * 13 12 11 15 15 C 1.46915 * 108.62163 * 179.97438 * 13 12 11 16 16 N 1.50117 * 106.78054 * 177.78005 * 15 13 12 17 17 C 1.36929 * 120.63589 * 111.34761 * 16 15 13 18 18 H 1.07996 * 120.00100 * 155.99961 * 17 16 15 19 19 C 1.38810 * 120.00198 * 336.00501 * 17 16 15 20 20 N 1.31628 * 119.99561 * 340.26500 * 19 17 16 21 21 Si 1.86801 * 120.00278 * 160.26522 * 19 17 16 22 22 H 1.48499 * 109.47140 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.46915 * 299.99797 * 21 19 17 24 24 H 1.48494 * 109.46848 * 60.00020 * 21 19 17 25 25 C 1.43427 * 118.72708 * 291.62358 * 16 15 13 26 26 C 1.54787 * 116.57743 * 89.21991 * 25 16 15 27 27 C 1.55188 * 108.80074 * 319.48687 * 26 25 16 28 28 O 1.39642 * 110.57162 * 322.08099 * 27 26 25 29 29 H 1.08005 * 119.99714 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00705 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99714 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.46868 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.47281 * 300.00160 * 4 3 2 34 34 H 1.08996 * 109.46593 * 60.00398 * 4 3 2 35 35 H 1.08998 * 109.47199 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.47154 * 300.00170 * 5 3 2 37 37 H 1.09006 * 109.46968 * 299.99940 * 6 5 3 38 38 H 1.09000 * 109.47582 * 59.99582 * 6 5 3 39 39 H 1.09003 * 109.47112 * 59.99891 * 8 7 6 40 40 H 1.09002 * 109.47127 * 179.97438 * 8 7 6 41 41 H 1.08998 * 109.47228 * 300.00003 * 8 7 6 42 42 H 0.97010 * 120.00049 * 359.97438 * 11 9 3 43 43 H 1.08998 * 109.46734 * 59.99701 * 12 11 9 44 44 H 1.08999 * 109.46801 * 299.99915 * 12 11 9 45 45 H 1.09005 * 109.98585 * 58.46574 * 15 13 12 46 46 H 1.09001 * 109.99701 * 297.09991 * 15 13 12 47 47 H 0.97000 * 119.99774 * 179.97438 * 20 19 17 48 48 H 1.09002 * 108.12268 * 210.83881 * 25 16 15 49 49 H 1.09000 * 108.12645 * 327.32207 * 25 16 15 50 50 H 1.09006 * 109.66283 * 199.66133 * 26 25 16 51 51 H 1.09002 * 109.55333 * 79.24847 * 26 25 16 52 52 H 1.09004 * 109.26188 * 201.79339 * 27 26 25 53 53 H 1.09000 * 109.25505 * 82.35679 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9432 1.3860 -1.2492 5 6 2.9432 1.3860 1.2493 6 6 3.9374 0.2231 1.2493 7 8 4.7585 0.2984 2.4164 8 6 5.7266 -0.7482 2.5143 9 6 1.0843 2.4505 -0.0006 10 8 1.0891 3.2529 0.9089 11 7 0.2033 2.5833 -1.0118 12 6 -0.7483 3.6972 -1.0127 13 6 -1.6271 3.6162 -2.2625 14 1 -2.1926 2.6849 -2.2294 15 6 -2.5734 4.7399 -2.2442 16 7 -3.3747 4.6524 -3.5106 17 6 -4.7053 4.3314 -3.4736 18 1 -5.3565 4.6344 -4.2802 19 6 -5.2174 3.6168 -2.3995 20 7 -4.4101 2.9196 -1.6282 21 14 -7.0519 3.6445 -2.0484 22 1 -7.3405 2.8069 -0.8566 23 1 -7.4852 5.0410 -1.7894 24 1 -7.7882 3.1070 -3.2206 25 6 -2.7183 4.9055 -4.7605 26 6 -2.0700 3.6872 -5.4615 27 6 -1.3808 2.8017 -4.3895 28 8 -0.7825 3.5952 -3.4084 29 1 -0.5400 0.9354 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 3.4880 2.3302 -1.2494 33 1 3.6515 0.5575 -1.2492 34 1 2.3165 1.3283 -2.1392 35 1 3.4886 2.3297 1.2491 36 1 2.3165 1.3283 2.1392 37 1 3.3923 -0.7209 1.2492 38 1 4.5641 0.2807 0.3593 39 1 6.3908 -0.7108 1.6508 40 1 6.3095 -0.6197 3.4264 41 1 5.2184 -1.7120 2.5403 42 1 0.1997 1.9417 -1.7394 43 1 -0.2029 4.6409 -1.0130 44 1 -1.3753 3.6401 -0.1229 45 1 -2.0299 5.6842 -2.2116 46 1 -3.2325 4.6582 -1.3799 47 1 -4.7679 2.4204 -0.8773 48 1 -3.4486 5.3356 -5.4460 49 1 -1.9411 5.6506 -4.5906 50 1 -1.3286 4.0308 -6.1829 51 1 -2.8393 3.1088 -5.9732 52 1 -0.6191 2.1857 -4.8675 53 1 -2.1252 2.1555 -3.9243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150047439.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:59 Heat of formation + Delta-G solvation = -92.221018 kcal Electronic energy + Delta-G solvation = -31817.258831 eV Core-core repulsion = 27690.297569 eV Total energy + Delta-G solvation = -4126.961262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.69061 -40.54584 -38.93735 -37.12876 -36.80884 -36.06487 -33.89236 -33.06412 -32.47397 -30.49550 -29.86466 -27.31624 -27.19885 -27.06464 -25.69235 -24.30054 -22.88383 -22.42560 -22.17141 -21.29129 -19.94009 -18.90372 -17.91027 -17.66912 -17.57458 -17.03343 -16.81690 -16.70126 -16.62815 -16.16923 -15.85782 -15.55759 -15.53472 -15.02126 -14.84224 -14.72950 -14.51850 -14.23678 -14.13666 -13.85428 -13.57551 -13.48451 -13.28285 -13.07717 -12.93764 -12.76485 -12.60559 -12.58625 -12.51279 -12.31204 -12.24290 -11.92929 -11.91278 -11.77675 -11.62528 -11.37704 -11.19256 -10.79617 -10.55034 -10.53087 -10.39900 -10.26796 -9.99224 -8.72085 -7.89350 -5.29501 1.27265 1.47819 1.51917 1.56601 1.59562 2.11497 2.52230 2.89731 3.10940 3.27677 3.47701 3.54136 3.67757 3.94225 4.10026 4.19324 4.23711 4.26041 4.28635 4.37431 4.40231 4.41016 4.51407 4.56209 4.58963 4.59928 4.72468 4.77481 4.79482 4.80801 4.85336 4.89823 4.96300 4.96515 5.04838 5.07972 5.16564 5.18820 5.19419 5.29958 5.34938 5.39062 5.43179 5.50679 5.59459 5.68404 5.72215 6.28868 6.36269 6.51061 6.53976 7.10705 7.20378 7.83324 8.36340 9.16203 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017387 B = 0.002752 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.975188 B =10171.324416 C =10934.741746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.039 4.039 4 C -0.139 4.139 5 C -0.087 4.087 6 C 0.064 3.936 7 O -0.423 6.423 8 C 0.025 3.975 9 C 0.518 3.482 10 O -0.586 6.586 11 N -0.701 5.701 12 C 0.131 3.869 13 C 0.083 3.917 14 H 0.085 0.915 15 C 0.144 3.856 16 N -0.600 5.600 17 C -0.264 4.264 18 H 0.063 0.937 19 C -0.036 4.036 20 N -0.915 5.915 21 Si 0.958 3.042 22 H -0.295 1.295 23 H -0.287 1.287 24 H -0.280 1.280 25 C 0.154 3.846 26 C -0.164 4.164 27 C 0.068 3.932 28 O -0.366 6.366 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.155 0.845 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.410 0.590 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.022 0.978 46 H 0.078 0.922 47 H 0.251 0.749 48 H 0.030 0.970 49 H 0.033 0.967 50 H 0.079 0.921 51 H 0.054 0.946 52 H 0.088 0.912 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.684 -10.426 -0.049 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.160 4.160 3 C -0.042 4.042 4 C -0.196 4.196 5 C -0.125 4.125 6 C -0.012 4.012 7 O -0.343 6.343 8 C -0.071 4.071 9 C 0.305 3.695 10 O -0.466 6.466 11 N -0.352 5.352 12 C 0.006 3.994 13 C 0.024 3.976 14 H 0.103 0.897 15 C 0.019 3.981 16 N -0.321 5.321 17 C -0.394 4.394 18 H 0.081 0.919 19 C -0.233 4.233 20 N -0.561 5.561 21 Si 0.788 3.212 22 H -0.221 1.221 23 H -0.213 1.213 24 H -0.206 1.206 25 C 0.026 3.974 26 C -0.205 4.205 27 C -0.010 4.010 28 O -0.284 6.284 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.172 0.828 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.247 0.753 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.041 0.959 46 H 0.096 0.904 47 H 0.060 0.940 48 H 0.048 0.952 49 H 0.052 0.948 50 H 0.098 0.902 51 H 0.072 0.928 52 H 0.106 0.894 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.763 -9.660 0.821 20.237 hybrid contribution -1.746 -0.253 -0.044 1.765 sum 16.017 -9.913 0.777 18.852 Atomic orbital electron populations 1.24401 0.96798 1.03057 0.99893 1.22856 0.95273 0.96962 1.00860 1.19861 0.94429 0.91240 0.98687 1.21950 0.99528 1.03962 0.94186 1.21162 0.96325 0.99140 0.95847 1.22685 0.92352 0.97959 0.88163 1.87846 1.50301 1.51568 1.44605 1.22930 0.91263 0.89897 1.02972 1.20994 0.81127 0.86378 0.80976 1.90673 1.72340 1.46097 1.37484 1.45971 1.34691 1.29543 1.25022 1.21381 0.90759 0.89642 0.97658 1.21714 0.89645 1.02566 0.83706 0.89697 1.20673 0.92324 0.94147 0.90945 1.44216 1.06422 1.80899 1.00612 1.19353 0.84753 1.28420 1.06835 0.91929 1.25461 1.00803 0.96879 1.00107 1.69990 1.34772 1.31551 1.19764 0.85491 0.81755 0.77021 0.76969 1.22089 1.21345 1.20635 1.20379 0.94634 0.95105 0.87305 1.23408 0.99439 0.99326 0.98364 1.22407 0.96240 0.92423 0.89918 1.87508 1.43824 1.71609 1.25456 0.89890 0.86338 0.82795 0.92136 0.88145 0.91160 0.91889 0.92794 0.91381 0.90769 0.92721 0.88993 0.92957 0.75289 0.92588 0.92273 0.95942 0.90410 0.93996 0.95207 0.94817 0.90244 0.92756 0.89412 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.79 13.17 67.79 0.89 -3.90 16 2 C -0.14 -2.71 7.99 25.65 0.21 -2.50 16 3 C -0.04 -0.87 0.62 -53.67 -0.03 -0.91 16 4 C -0.14 -2.32 8.00 71.98 0.58 -1.74 16 5 C -0.09 -2.05 3.92 30.60 0.12 -1.93 16 6 C 0.06 1.09 5.33 71.98 0.38 1.48 16 7 O -0.42 -8.79 10.70 -148.98 -1.59 -10.38 16 8 C 0.03 0.31 11.01 113.37 1.25 1.56 16 9 C 0.52 16.54 5.34 87.66 0.47 17.01 16 10 O -0.59 -23.75 15.99 -3.06 -0.05 -23.80 16 11 N -0.70 -22.16 3.57 -463.07 -1.65 -23.81 16 12 C 0.13 4.92 5.26 86.38 0.45 5.38 16 13 C 0.08 3.33 2.01 28.70 0.06 3.39 16 14 H 0.09 3.88 5.26 -2.38 -0.01 3.87 16 15 C 0.14 6.60 4.71 83.78 0.39 7.00 16 16 N -0.60 -28.68 2.62 -707.12 -1.86 -30.53 16 17 C -0.26 -13.75 9.62 84.03 0.81 -12.95 16 18 H 0.06 3.27 7.88 -2.91 -0.02 3.25 16 19 C -0.04 -1.87 4.91 84.86 0.42 -1.45 16 20 N -0.92 -48.15 9.58 21.65 0.21 -47.94 16 21 Si 0.96 43.14 29.60 68.60 2.03 45.17 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 23 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 C 0.15 6.30 5.28 87.56 0.46 6.76 16 26 C -0.16 -5.69 6.74 31.95 0.22 -5.47 16 27 C 0.07 2.34 6.38 72.73 0.46 2.80 16 28 O -0.37 -13.46 9.33 -137.21 -1.28 -14.74 16 29 H 0.08 2.51 5.18 -2.91 -0.02 2.50 16 30 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.15 1.90 7.00 -2.91 -0.02 1.88 16 32 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.10 1.06 6.43 -2.39 -0.02 1.04 16 34 H 0.07 1.14 7.56 -2.39 -0.02 1.13 16 35 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 36 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 37 H 0.07 0.92 6.62 -2.38 -0.02 0.91 16 38 H 0.07 0.94 6.43 -2.39 -0.02 0.92 16 39 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.41 11.57 6.95 -92.70 -0.64 10.93 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 45 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.08 3.99 6.01 -2.39 -0.01 3.97 16 47 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 48 H 0.03 1.21 7.96 -2.39 -0.02 1.19 16 49 H 0.03 1.34 7.99 -2.39 -0.02 1.32 16 50 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 51 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 52 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 53 H 0.04 1.46 6.66 -2.39 -0.02 1.44 16 Total: -1.00 -63.92 404.93 3.19 -60.73 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.25 Total: 30.78 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 7.13 Total: 14.52 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -3.30 Total: -102.29 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -2.92 Total: -48.92 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -63.92 3.19 -60.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150047439.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.490 kcal (2) G-P(sol) polarization free energy of solvation -63.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds