Wall clock time and date at job start Sat Apr 11 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00248 * 2 1 4 4 C 1.52999 * 109.47589 * 119.99851 * 3 2 1 5 5 C 1.53006 * 109.46758 * 240.00058 * 3 2 1 6 6 C 1.53005 * 109.47064 * 299.99461 * 5 3 2 7 7 O 1.42901 * 109.47106 * 180.02562 * 6 5 3 8 8 C 1.42898 * 113.99883 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47077 * 359.97438 * 3 2 1 10 10 O 1.21284 * 120.00376 * 239.99898 * 9 3 2 11 11 N 1.34780 * 120.00056 * 60.00560 * 9 3 2 12 12 C 1.46498 * 120.00013 * 179.97438 * 11 9 3 13 13 C 1.53006 * 109.46791 * 180.02562 * 12 11 9 14 14 H 1.08999 * 108.45350 * 57.87439 * 13 12 11 15 15 C 1.46919 * 108.61886 * 175.75769 * 13 12 11 16 16 N 1.49896 * 106.62338 * 177.93437 * 15 13 12 17 17 C 1.36937 * 120.49372 * 111.40039 * 16 15 13 18 18 H 1.08001 * 120.00051 * 155.30993 * 17 16 15 19 19 C 1.38811 * 120.00022 * 335.30609 * 17 16 15 20 20 N 1.31614 * 120.00004 * 340.86507 * 19 17 16 21 21 Si 1.86799 * 119.99944 * 160.86761 * 19 17 16 22 22 H 1.48504 * 109.47185 * 90.00319 * 21 19 17 23 23 H 1.48499 * 109.47251 * 209.99595 * 21 19 17 24 24 H 1.48495 * 109.47289 * 330.00004 * 21 19 17 25 25 C 1.43428 * 118.87357 * 291.09372 * 16 15 13 26 26 C 1.55323 * 116.08867 * 89.55027 * 25 16 15 27 27 C 1.55192 * 108.87677 * 319.57310 * 26 25 16 28 28 O 1.39640 * 110.56596 * 322.14578 * 27 26 25 29 29 H 1.07997 * 120.00403 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99709 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00028 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.47051 * 299.99964 * 4 3 2 33 33 H 1.09007 * 109.46633 * 60.00044 * 4 3 2 34 34 H 1.08994 * 109.47497 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.47834 * 59.99740 * 5 3 2 36 36 H 1.09010 * 109.46978 * 180.02562 * 5 3 2 37 37 H 1.08999 * 109.47415 * 300.00499 * 6 5 3 38 38 H 1.08994 * 109.46851 * 60.00483 * 6 5 3 39 39 H 1.09005 * 109.46865 * 299.99574 * 8 7 6 40 40 H 1.08996 * 109.47553 * 59.99356 * 8 7 6 41 41 H 1.08996 * 109.46939 * 180.02562 * 8 7 6 42 42 H 0.97001 * 119.99717 * 359.97438 * 11 9 3 43 43 H 1.08997 * 109.47145 * 60.00300 * 12 11 9 44 44 H 1.08994 * 109.47171 * 299.99664 * 12 11 9 45 45 H 1.09003 * 109.98705 * 297.23377 * 15 13 12 46 46 H 1.08999 * 109.99256 * 58.60484 * 15 13 12 47 47 H 0.97005 * 120.00063 * 179.97438 * 20 19 17 48 48 H 1.09005 * 108.11937 * 327.90086 * 25 16 15 49 49 H 1.09000 * 108.12953 * 211.21042 * 25 16 15 50 50 H 1.08999 * 109.56721 * 79.38848 * 26 25 16 51 51 H 1.08994 * 109.57265 * 199.75347 * 26 25 16 52 52 H 1.09000 * 109.25615 * 82.41831 * 27 26 25 53 53 H 1.08995 * 109.25769 * 201.89876 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 6 2.9431 1.3860 -1.2493 6 6 3.9374 0.2230 -1.2492 7 8 4.7593 0.2989 -2.4157 8 6 5.7275 -0.7475 -2.5136 9 6 1.0843 2.4505 -0.0006 10 8 1.0897 3.2525 -0.9104 11 7 0.2025 2.5838 1.0099 12 6 -0.7491 3.6976 1.0096 13 6 -1.6288 3.6172 2.2589 14 1 -0.9835 3.6381 3.1371 15 6 -2.5050 4.7960 2.2923 16 7 -3.3790 4.6466 3.5008 17 6 -3.2329 5.4868 4.5722 18 1 -4.0634 5.6585 5.2410 19 6 -2.0174 6.1176 4.7988 20 7 -0.9192 5.6482 4.2458 21 14 -1.9403 7.6327 5.8888 22 1 -1.7052 7.2190 7.2955 23 1 -0.8300 8.5102 5.4388 24 1 -3.2243 8.3732 5.7986 25 6 -4.3741 3.6137 3.5125 26 6 -3.9212 2.2351 4.0667 27 6 -2.4870 1.9351 3.5556 28 8 -2.3318 2.3792 2.2408 29 1 -0.5401 -0.9352 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 2.3165 1.3285 2.1392 33 1 3.6515 0.5576 1.2492 34 1 3.4885 2.3299 1.2490 35 1 2.3166 1.3282 -2.1393 36 1 3.4886 2.3298 -1.2491 37 1 4.5640 0.2808 -0.3592 38 1 3.3924 -0.7209 -1.2492 39 1 6.3911 -0.7104 -1.6496 40 1 5.2194 -1.7114 -2.5403 41 1 6.3110 -0.6185 -3.4252 42 1 0.1979 1.9422 1.7374 43 1 -1.3755 3.6401 0.1194 44 1 -0.2038 4.6413 1.0098 45 1 -1.9062 5.7032 2.3739 46 1 -3.1163 4.8316 1.3905 47 1 -0.0698 6.0893 4.4038 48 1 -4.7252 3.4696 2.4906 49 1 -5.2158 3.9603 4.1120 50 1 -3.9224 2.2615 5.1564 51 1 -4.6029 1.4595 3.7178 52 1 -1.7642 2.4430 4.1941 53 1 -2.3088 0.8605 3.5949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150047440.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:04 Heat of formation + Delta-G solvation = -92.159902 kcal Electronic energy + Delta-G solvation = -31827.857745 eV Core-core repulsion = 27700.899133 eV Total energy + Delta-G solvation = -4126.958612 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -41.68626 -40.53177 -38.93941 -37.12191 -36.80662 -36.06447 -33.87168 -33.05987 -32.44786 -30.47348 -29.86866 -27.31438 -27.20630 -27.06161 -25.69613 -24.28846 -22.86993 -22.41628 -22.15753 -21.30006 -19.93496 -18.91573 -17.85665 -17.78510 -17.42866 -17.06242 -16.88735 -16.68932 -16.52128 -16.20304 -15.85628 -15.53156 -15.51839 -15.12992 -14.77122 -14.70457 -14.51857 -14.21622 -14.10482 -13.87863 -13.62867 -13.43721 -13.28107 -13.06965 -12.91836 -12.76995 -12.62316 -12.56802 -12.51359 -12.31523 -12.25097 -11.92602 -11.91310 -11.77191 -11.61368 -11.37086 -11.18006 -10.79729 -10.55387 -10.53169 -10.36406 -10.24903 -9.99508 -8.70749 -7.89515 -5.29990 1.31603 1.46462 1.51363 1.58294 1.59551 2.11820 2.52066 2.89714 3.12196 3.27974 3.48702 3.54385 3.69287 3.93917 4.10578 4.20123 4.23329 4.27642 4.28597 4.38256 4.40726 4.42803 4.52487 4.56974 4.58618 4.59771 4.73004 4.77335 4.78513 4.80477 4.84164 4.89490 4.96618 4.97284 5.06310 5.08704 5.17070 5.19152 5.19971 5.28251 5.34907 5.40471 5.43319 5.51175 5.63625 5.68636 5.76725 6.28550 6.36654 6.52212 6.54234 7.11268 7.20163 7.83710 8.36258 9.16250 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.002779 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.022552 B =10072.912844 C =10990.893066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C -0.039 4.039 4 C -0.141 4.141 5 C -0.087 4.087 6 C 0.065 3.935 7 O -0.423 6.423 8 C 0.025 3.975 9 C 0.518 3.482 10 O -0.585 6.585 11 N -0.702 5.702 12 C 0.131 3.869 13 C 0.082 3.918 14 H 0.086 0.914 15 C 0.145 3.855 16 N -0.601 5.601 17 C -0.263 4.263 18 H 0.062 0.938 19 C -0.036 4.036 20 N -0.916 5.916 21 Si 0.958 3.042 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.280 1.280 25 C 0.154 3.846 26 C -0.164 4.164 27 C 0.069 3.931 28 O -0.364 6.364 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.410 0.590 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.022 0.978 47 H 0.250 0.750 48 H 0.034 0.966 49 H 0.030 0.970 50 H 0.053 0.947 51 H 0.078 0.922 52 H 0.036 0.964 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.178 -16.903 -6.234 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.165 4.165 3 C -0.042 4.042 4 C -0.198 4.198 5 C -0.125 4.125 6 C -0.011 4.011 7 O -0.343 6.343 8 C -0.071 4.071 9 C 0.305 3.695 10 O -0.466 6.466 11 N -0.353 5.353 12 C 0.006 3.994 13 C 0.023 3.977 14 H 0.104 0.896 15 C 0.020 3.980 16 N -0.322 5.322 17 C -0.393 4.393 18 H 0.080 0.920 19 C -0.232 4.232 20 N -0.562 5.562 21 Si 0.787 3.213 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.205 1.205 25 C 0.026 3.974 26 C -0.205 4.205 27 C -0.009 4.009 28 O -0.283 6.283 29 H 0.140 0.860 30 H 0.105 0.895 31 H 0.170 0.830 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.247 0.753 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.040 0.960 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.049 0.951 50 H 0.072 0.928 51 H 0.097 0.903 52 H 0.054 0.946 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.204 -16.176 -7.149 19.937 hybrid contribution -0.052 1.032 1.296 1.657 sum 9.152 -15.145 -5.853 18.638 Atomic orbital electron populations 1.24432 0.96561 1.03316 0.99115 1.22820 0.95523 0.96624 1.01580 1.19846 0.94405 0.91550 0.98378 1.21958 0.99627 1.03830 0.94418 1.21163 0.96355 0.98993 0.95953 1.22680 0.92328 0.98046 0.88086 1.87846 1.50256 1.51587 1.44619 1.22929 0.91267 0.89946 1.02921 1.20991 0.81085 0.86354 0.81023 1.90670 1.72351 1.46018 1.37522 1.45994 1.34578 1.29542 1.25180 1.21378 0.90369 0.89483 0.98188 1.21721 0.92950 0.85600 0.97405 0.89642 1.20622 0.92472 0.98111 0.86810 1.44139 1.40650 1.33156 1.14264 1.19377 0.95088 1.19754 1.05037 0.92001 1.25460 0.94777 1.02308 1.00702 1.69985 0.97560 1.40046 1.48562 0.85434 0.76757 0.80516 0.78561 1.21409 1.22065 1.20548 1.20489 0.90955 0.87964 0.97944 1.23490 0.97889 0.99082 1.00063 1.22385 0.96458 0.98588 0.83425 1.87514 1.77790 1.36489 1.26484 0.85991 0.89480 0.82963 0.91363 0.88092 0.92510 0.92508 0.92213 0.91063 0.91152 0.92877 0.92823 0.88974 0.75347 0.92548 0.92301 0.90474 0.95979 0.94013 0.94759 0.95148 0.92784 0.90336 0.94596 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.16 13.17 67.78 0.89 -3.27 16 2 C -0.15 -2.69 7.99 25.65 0.21 -2.48 16 3 C -0.04 -0.87 0.62 -53.68 -0.03 -0.91 16 4 C -0.14 -2.56 8.00 71.98 0.58 -1.99 16 5 C -0.09 -2.07 3.92 30.60 0.12 -1.95 16 6 C 0.06 1.11 5.33 71.98 0.38 1.50 16 7 O -0.42 -8.87 10.70 -148.98 -1.59 -10.46 16 8 C 0.03 0.32 11.01 113.37 1.25 1.57 16 9 C 0.52 16.61 5.34 87.65 0.47 17.07 16 10 O -0.59 -23.77 15.98 -3.04 -0.05 -23.82 16 11 N -0.70 -22.23 3.60 -463.06 -1.67 -23.89 16 12 C 0.13 4.92 5.24 86.38 0.45 5.37 16 13 C 0.08 3.31 1.94 28.71 0.06 3.37 16 14 H 0.09 3.90 5.21 -2.39 -0.01 3.88 16 15 C 0.14 6.62 4.71 83.83 0.39 7.02 16 16 N -0.60 -28.64 2.59 -706.62 -1.83 -30.47 16 17 C -0.26 -13.67 9.61 84.03 0.81 -12.87 16 18 H 0.06 3.23 7.88 -2.91 -0.02 3.21 16 19 C -0.04 -1.87 4.91 84.86 0.42 -1.46 16 20 N -0.92 -48.09 9.54 21.65 0.21 -47.88 16 21 Si 0.96 43.05 29.59 68.60 2.03 45.08 16 22 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.15 6.31 5.34 87.75 0.47 6.78 16 26 C -0.16 -5.68 6.75 32.14 0.22 -5.47 16 27 C 0.07 2.38 6.38 72.73 0.46 2.85 16 28 O -0.36 -13.39 9.54 -137.19 -1.31 -14.69 16 29 H 0.12 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.09 2.40 5.18 -2.91 -0.02 2.38 16 31 H 0.15 1.77 7.00 -2.91 -0.02 1.75 16 32 H 0.07 1.23 7.57 -2.39 -0.02 1.21 16 33 H 0.10 1.20 6.43 -2.38 -0.02 1.18 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 36 H 0.06 1.65 8.10 -2.38 -0.02 1.63 16 37 H 0.07 0.96 6.43 -2.39 -0.02 0.94 16 38 H 0.07 0.94 6.62 -2.39 -0.02 0.92 16 39 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.41 11.60 7.08 -92.71 -0.66 10.94 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.08 3.95 6.03 -2.39 -0.01 3.93 16 46 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.25 13.02 8.31 -92.70 -0.77 12.25 16 48 H 0.03 1.36 7.99 -2.38 -0.02 1.34 16 49 H 0.03 1.23 7.96 -2.39 -0.02 1.22 16 50 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 52 H 0.04 1.45 6.66 -2.39 -0.02 1.43 16 53 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -63.66 405.14 3.16 -60.50 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.23 Total: 30.50 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 7.14 Total: 15.14 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -3.29 Total: -102.25 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -2.95 Total: -48.98 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -63.66 3.16 -60.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150047440.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.656 kcal (2) G-P(sol) polarization free energy of solvation -63.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds