Wall clock time and date at job start Sat Apr 11 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00316 * 2 1 4 4 C 1.53007 * 109.46835 * 244.73089 * 3 2 1 5 5 C 1.53006 * 109.46942 * 4.72387 * 3 2 1 6 6 C 1.53005 * 109.47046 * 185.36378 * 5 3 2 7 7 O 1.42901 * 109.46891 * 175.84664 * 6 5 3 8 8 C 1.42896 * 113.99549 * 180.02562 * 7 6 5 9 9 C 1.50692 * 109.47718 * 124.72759 * 3 2 1 10 10 O 1.21283 * 120.00326 * 240.00383 * 9 3 2 11 11 N 1.34777 * 119.99797 * 60.00002 * 9 3 2 12 12 C 1.46501 * 119.99899 * 180.02562 * 11 9 3 13 13 C 1.53001 * 109.46895 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.40707 * 304.99216 * 13 12 11 15 15 C 1.54296 * 109.40505 * 185.16025 * 13 12 11 16 16 N 1.48180 * 110.69772 * 200.48955 * 15 13 12 17 17 C 1.36932 * 118.51588 * 138.77111 * 16 15 13 18 18 H 1.08000 * 120.00113 * 210.03474 * 17 16 15 19 19 C 1.38812 * 120.00051 * 30.03053 * 17 16 15 20 20 N 1.31625 * 119.99714 * 9.82174 * 19 17 16 21 21 Si 1.86798 * 120.00216 * 189.81472 * 19 17 16 22 22 H 1.48502 * 109.46961 * 90.00432 * 21 19 17 23 23 H 1.48503 * 109.47141 * 210.00372 * 21 19 17 24 24 H 1.48502 * 109.47022 * 330.00403 * 21 19 17 25 25 C 1.44462 * 122.96897 * 318.80043 * 16 15 13 26 26 C 1.54870 * 109.33195 * 88.91015 * 25 16 15 27 27 C 1.47688 * 109.67888 * 290.09932 * 26 25 16 28 28 O 1.40524 * 109.41008 * 64.83652 * 13 12 11 29 29 H 1.08002 * 119.99780 * 5.10125 * 1 2 3 30 30 H 1.07997 * 120.00462 * 185.09518 * 1 2 3 31 31 H 1.08005 * 119.99845 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.46602 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.46883 * 299.99493 * 4 3 2 34 34 H 1.08997 * 109.47256 * 59.99916 * 4 3 2 35 35 H 1.09000 * 109.46921 * 65.36919 * 5 3 2 36 36 H 1.08992 * 109.47440 * 305.36435 * 5 3 2 37 37 H 1.09003 * 109.46671 * 295.84694 * 6 5 3 38 38 H 1.08998 * 109.46717 * 55.84105 * 6 5 3 39 39 H 1.09000 * 109.47073 * 179.97438 * 8 7 6 40 40 H 1.08998 * 109.47631 * 299.99686 * 8 7 6 41 41 H 1.09005 * 109.47646 * 60.00048 * 8 7 6 42 42 H 0.97005 * 120.00014 * 359.97438 * 11 9 3 43 43 H 1.09001 * 109.47207 * 299.99226 * 12 11 9 44 44 H 1.08999 * 109.47244 * 60.00027 * 12 11 9 45 45 H 1.08996 * 109.23394 * 320.80567 * 15 13 12 46 46 H 1.09002 * 109.23229 * 80.21777 * 15 13 12 47 47 H 0.96998 * 119.99666 * 179.97438 * 20 19 17 48 48 H 1.09007 * 109.49296 * 208.86788 * 25 16 15 49 49 H 1.08999 * 109.49548 * 328.94713 * 25 16 15 50 50 H 1.08999 * 109.43668 * 50.16365 * 26 25 16 51 51 H 1.09004 * 109.43888 * 170.08026 * 26 25 16 52 52 H 1.09002 * 108.64329 * 181.88538 * 27 26 25 53 53 H 1.09003 * 108.64472 * 299.85500 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.8518 1.4387 -1.3045 5 6 1.0735 2.4656 0.1188 6 6 1.8242 3.7920 -0.0154 7 8 0.8887 4.8722 -0.0014 8 6 1.4897 6.1630 -0.1223 9 6 3.0156 1.3354 1.1676 10 8 2.9126 2.2001 2.0118 11 7 3.9817 0.4017 1.2738 12 6 4.9070 0.4309 2.4092 13 6 5.8967 -0.7299 2.2906 14 1 5.3469 -1.6668 2.2013 15 6 6.7864 -0.7758 3.5504 16 7 8.0350 -1.5276 3.2826 17 6 9.2112 -1.0431 3.7893 18 1 10.1396 -1.2264 3.2688 19 6 9.2103 -0.3163 4.9720 20 7 8.1196 -0.2554 5.7062 21 14 10.7571 0.5753 5.5215 22 1 10.7585 1.9524 4.9658 23 1 10.7906 0.6400 7.0047 24 1 11.9517 -0.1578 5.0308 25 6 8.0674 -2.7482 2.5106 26 6 8.2577 -2.4028 1.0130 27 6 7.0322 -1.7657 0.4899 28 8 6.6963 -0.5471 1.1496 29 1 -0.5400 0.9316 -0.0832 30 1 -0.5401 -0.9315 0.0831 31 1 1.8500 -0.9354 0.0004 32 1 3.3965 2.3829 -1.3047 33 1 3.5571 0.6119 -1.3892 34 1 2.1631 1.4168 -2.1491 35 1 0.5799 2.4241 1.0898 36 1 0.3272 2.3889 -0.6718 37 1 2.5189 3.9021 0.8173 38 1 2.3778 3.8028 -0.9543 39 1 0.7137 6.9282 -0.1038 40 1 2.1777 6.3227 0.7078 41 1 2.0360 6.2228 -1.0636 42 1 4.0639 -0.2901 0.5988 43 1 5.4521 1.3748 2.4096 44 1 4.3452 0.3354 3.3384 45 1 7.0372 0.2417 3.8501 46 1 6.2405 -1.2636 4.3579 47 1 8.1191 0.2521 6.5328 48 1 8.8963 -3.3704 2.8486 49 1 7.1296 -3.2876 2.6433 50 1 9.0981 -1.7174 0.9028 51 1 8.4585 -3.3160 0.4527 52 1 7.1719 -1.5607 -0.5714 53 1 6.2018 -2.4627 0.6029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150047442.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:10 Heat of formation + Delta-G solvation = -104.093596 kcal Electronic energy + Delta-G solvation = -31474.889172 eV Core-core repulsion = 27347.413077 eV Total energy + Delta-G solvation = -4127.476096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.59073 -40.34440 -38.84638 -37.37071 -36.86829 -36.03688 -34.12438 -32.93361 -32.38473 -30.71738 -29.80090 -27.36572 -27.23922 -27.04545 -25.65710 -24.33809 -23.23465 -22.39566 -21.91282 -21.43928 -19.74591 -18.84090 -18.01857 -17.77116 -17.61349 -17.24926 -16.95282 -16.69075 -16.50617 -16.19461 -15.93978 -15.58996 -15.33705 -15.09618 -14.94739 -14.76742 -14.50450 -14.20131 -14.03305 -13.90803 -13.78552 -13.39674 -13.23801 -13.11905 -13.00670 -12.80250 -12.71715 -12.55597 -12.46311 -12.29889 -12.13361 -11.99663 -11.89028 -11.80264 -11.62934 -11.44290 -11.36272 -10.97649 -10.59301 -10.58490 -10.29908 -10.14232 -10.10082 -8.62020 -7.86071 -5.36683 1.22149 1.43131 1.45447 1.53066 1.68972 2.17118 2.50128 2.74753 2.92567 3.28277 3.57051 3.60515 3.70542 3.86929 4.03460 4.07128 4.14041 4.18602 4.25991 4.28007 4.32236 4.43211 4.46972 4.48449 4.53117 4.55854 4.59069 4.62641 4.78163 4.78880 4.81051 4.83783 4.86426 4.89581 5.03171 5.04667 5.13433 5.15424 5.22705 5.27538 5.28226 5.40998 5.51872 5.62537 5.68106 5.70755 5.80859 6.18906 6.41071 6.52749 6.58307 7.17647 7.22616 7.92648 8.31479 9.17916 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.002849 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.392407 B = 9824.138938 C =11035.832865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.162 4.162 3 C -0.037 4.037 4 C -0.141 4.141 5 C -0.091 4.091 6 C 0.052 3.948 7 O -0.413 6.413 8 C 0.026 3.974 9 C 0.518 3.482 10 O -0.579 6.579 11 N -0.703 5.703 12 C 0.136 3.864 13 C 0.078 3.922 14 H 0.075 0.925 15 C 0.175 3.825 16 N -0.603 5.603 17 C -0.260 4.260 18 H 0.060 0.940 19 C -0.047 4.047 20 N -0.935 5.935 21 Si 0.962 3.038 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.268 1.268 25 C 0.148 3.852 26 C -0.170 4.170 27 C 0.067 3.933 28 O -0.377 6.377 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.040 0.960 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.034 0.966 41 H 0.053 0.947 42 H 0.413 0.587 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.039 0.961 46 H 0.011 0.989 47 H 0.248 0.752 48 H 0.040 0.960 49 H 0.045 0.955 50 H 0.041 0.959 51 H 0.097 0.903 52 H 0.098 0.902 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.121 -0.402 -18.810 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C -0.040 4.040 4 C -0.198 4.198 5 C -0.128 4.128 6 C -0.024 4.024 7 O -0.332 6.332 8 C -0.070 4.070 9 C 0.305 3.695 10 O -0.459 6.459 11 N -0.355 5.355 12 C 0.012 3.988 13 C 0.018 3.982 14 H 0.092 0.908 15 C 0.049 3.951 16 N -0.325 5.325 17 C -0.391 4.391 18 H 0.077 0.923 19 C -0.243 4.243 20 N -0.581 5.581 21 Si 0.791 3.209 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.193 1.193 25 C 0.021 3.979 26 C -0.211 4.211 27 C -0.008 4.008 28 O -0.295 6.295 29 H 0.125 0.875 30 H 0.137 0.863 31 H 0.149 0.851 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.250 0.750 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.029 0.971 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.063 0.937 50 H 0.060 0.940 51 H 0.115 0.885 52 H 0.116 0.884 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.337 0.397 -18.102 23.729 hybrid contribution 1.478 0.339 1.018 1.826 sum -13.859 0.737 -17.085 22.011 Atomic orbital electron populations 1.24263 0.95749 1.03520 0.97456 1.22701 0.96425 0.95775 1.03122 1.19788 0.94361 0.95928 0.93961 1.21966 1.00452 1.02986 0.94405 1.21387 0.97538 0.90662 1.03260 1.22838 0.92007 0.86989 1.00592 1.87766 1.34955 1.15475 1.95034 1.22896 0.99578 0.84224 1.00310 1.21045 0.81041 0.80305 0.87061 1.90683 1.73395 1.37924 1.43906 1.45764 1.31286 1.31534 1.26869 1.21190 0.89864 0.98309 0.89487 1.22736 0.90769 0.96848 0.87824 0.90761 1.21354 0.85895 0.96042 0.91827 1.43786 1.03994 1.23925 1.60803 1.19421 0.87623 1.30281 1.01801 0.92257 1.25823 0.99703 1.02620 0.96127 1.70147 1.28786 1.44707 1.14421 0.85347 0.80267 0.78588 0.76727 1.21739 1.21986 1.19256 1.20919 0.99048 0.87324 0.90609 1.22150 0.99257 1.01070 0.98576 1.21598 0.96822 0.85904 0.96515 1.87450 1.70525 1.31403 1.40167 0.87541 0.86273 0.85117 0.92425 0.90430 0.88919 0.92223 0.88115 0.94162 0.91801 0.87948 0.94766 0.92824 0.75022 0.93439 0.91216 0.94257 0.97130 0.94283 0.94139 0.93664 0.93986 0.88514 0.88447 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 13.74 67.78 0.93 -1.37 16 2 C -0.16 -2.43 8.54 25.65 0.22 -2.21 16 3 C -0.04 -0.71 0.62 -53.67 -0.03 -0.75 16 4 C -0.14 -2.05 7.86 71.98 0.57 -1.48 16 5 C -0.09 -1.93 3.03 30.60 0.09 -1.83 16 6 C 0.05 1.26 5.27 71.98 0.38 1.64 16 7 O -0.41 -10.32 10.70 -148.98 -1.59 -11.91 16 8 C 0.03 0.49 11.01 113.37 1.25 1.74 16 9 C 0.52 14.43 6.21 87.65 0.54 14.97 16 10 O -0.58 -21.53 13.99 -3.04 -0.04 -21.57 16 11 N -0.70 -18.36 5.29 -463.06 -2.45 -20.80 16 12 C 0.14 4.67 5.24 86.38 0.45 5.12 16 13 C 0.08 2.76 2.35 31.03 0.07 2.83 16 14 H 0.07 2.22 7.20 -2.39 -0.02 2.20 16 15 C 0.17 8.35 4.47 86.50 0.39 8.74 16 16 N -0.60 -29.69 2.58 -696.45 -1.79 -31.49 16 17 C -0.26 -14.43 9.41 84.03 0.79 -13.64 16 18 H 0.06 3.25 7.85 -2.91 -0.02 3.23 16 19 C -0.05 -2.69 5.00 84.86 0.42 -2.27 16 20 N -0.93 -55.79 10.91 21.65 0.24 -55.55 16 21 Si 0.96 46.15 29.56 68.60 2.03 48.18 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.15 5.73 5.68 87.40 0.50 6.23 16 26 C -0.17 -5.25 6.03 29.57 0.18 -5.07 16 27 C 0.07 1.80 6.05 70.32 0.43 2.23 16 28 O -0.38 -13.09 9.77 -144.90 -1.42 -14.51 16 29 H 0.11 1.42 5.68 -2.91 -0.02 1.40 16 30 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 31 H 0.13 1.56 7.99 -2.91 -0.02 1.54 16 32 H 0.06 0.96 6.25 -2.38 -0.01 0.94 16 33 H 0.08 0.96 7.56 -2.39 -0.02 0.94 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 1.52 7.85 -2.39 -0.02 1.50 16 36 H 0.10 1.67 6.84 -2.39 -0.02 1.66 16 37 H 0.04 1.24 6.07 -2.39 -0.01 1.22 16 38 H 0.06 1.29 6.10 -2.39 -0.01 1.28 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 40 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.41 8.16 7.70 -92.70 -0.71 7.44 16 43 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.04 2.19 6.36 -2.39 -0.02 2.17 16 46 H 0.01 0.55 7.98 -2.39 -0.02 0.54 16 47 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 48 H 0.04 1.62 7.97 -2.38 -0.02 1.60 16 49 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 50 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 52 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 53 H 0.06 1.37 7.26 -2.39 -0.02 1.35 16 Total: -1.00 -73.61 409.03 2.31 -71.30 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.17 Total: 21.48 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 7.17 Total: 14.88 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -4.01 Total: -107.84 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -3.05 Total: -47.99 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -73.61 2.31 -71.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150047442.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.795 kcal (2) G-P(sol) polarization free energy of solvation -73.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds