Wall clock time and date at job start Sat Apr 11 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99754 * 2 1 4 4 C 1.53000 * 109.47359 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.45848 * 300.00079 * 4 3 2 6 6 N 1.46504 * 109.47548 * 59.99743 * 5 4 3 7 7 C 1.34776 * 120.00198 * 179.72785 * 6 5 4 8 8 O 1.21362 * 119.99801 * 0.26841 * 7 6 5 9 9 C 1.49084 * 119.99792 * 180.27457 * 7 6 5 10 10 O 1.20785 * 120.00538 * 359.97438 * 9 7 6 11 11 C 1.50701 * 119.99985 * 179.97438 * 9 7 6 12 12 C 1.52996 * 109.47306 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47150 * 300.00164 * 11 9 7 14 14 C 1.53001 * 109.46898 * 59.99738 * 11 9 7 15 15 C 1.53040 * 109.45824 * 59.96866 * 4 3 2 16 16 C 1.53167 * 109.32900 * 181.38916 * 15 4 3 17 17 N 1.46929 * 108.76501 * 305.35408 * 16 15 4 18 18 C 1.36934 * 120.63043 * 233.58239 * 17 16 15 19 19 H 1.08002 * 119.99659 * 27.70974 * 18 17 16 20 20 C 1.38809 * 119.99934 * 207.69830 * 18 17 16 21 21 N 1.31617 * 120.00086 * 17.35939 * 20 18 17 22 22 Si 1.86803 * 119.99893 * 197.35774 * 20 18 17 23 23 H 1.48506 * 109.47081 * 60.00396 * 22 20 18 24 24 H 1.48500 * 109.47221 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47351 * 300.00500 * 22 20 18 26 26 C 1.46931 * 118.73551 * 53.61187 * 17 16 15 27 27 C 1.53037 * 109.46265 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46814 * 300.00018 * 1 2 3 29 29 H 1.08995 * 109.47168 * 60.00166 * 1 2 3 30 30 H 1.09001 * 109.46908 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47328 * 59.99916 * 3 2 1 32 32 H 1.09001 * 109.46870 * 300.00042 * 3 2 1 33 33 H 1.08996 * 109.47283 * 299.99625 * 5 4 3 34 34 H 1.09000 * 109.47403 * 179.97438 * 5 4 3 35 35 H 0.97005 * 119.99683 * 359.97438 * 6 5 4 36 36 H 1.08996 * 109.47477 * 60.00043 * 12 11 9 37 37 H 1.09004 * 109.47066 * 180.02562 * 12 11 9 38 38 H 1.09000 * 109.47091 * 299.99789 * 12 11 9 39 39 H 1.08997 * 109.47227 * 59.99500 * 13 11 9 40 40 H 1.09004 * 109.47018 * 179.97438 * 13 11 9 41 41 H 1.08995 * 109.46810 * 300.00032 * 13 11 9 42 42 H 1.09000 * 109.47183 * 60.00404 * 14 11 9 43 43 H 1.09004 * 109.47270 * 180.02562 * 14 11 9 44 44 H 1.09003 * 109.47255 * 299.99854 * 14 11 9 45 45 H 1.09002 * 109.49951 * 301.33158 * 15 4 3 46 46 H 1.09007 * 109.49819 * 61.42295 * 15 4 3 47 47 H 1.09005 * 109.58883 * 185.57331 * 16 15 4 48 48 H 1.08995 * 109.70834 * 65.21283 * 16 15 4 49 49 H 0.97003 * 119.99764 * 179.97438 * 21 20 18 50 50 H 1.09004 * 109.58189 * 186.60269 * 26 17 16 51 51 H 1.08998 * 109.70527 * 66.24764 * 26 17 16 52 52 H 1.09003 * 109.49644 * 298.57738 * 27 4 3 53 53 H 1.08998 * 109.49744 * 58.64506 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 6 3.9861 0.4258 1.2503 6 7 3.3902 -0.9126 1.2503 7 6 3.6530 -1.7673 2.2587 8 8 4.3795 -1.4265 3.1692 9 6 3.0515 -3.1314 2.2555 10 8 2.3282 -3.4704 1.3495 11 6 3.3458 -4.0873 3.3827 12 6 2.6112 -5.4068 3.1374 13 6 4.8520 -4.3477 3.4504 14 6 2.8736 -3.4781 4.7044 15 6 3.9872 0.4244 -1.2483 16 6 5.5114 0.2751 -1.2272 17 7 6.1149 1.6067 -1.0806 18 6 7.0612 2.0454 -1.9678 19 1 7.0650 1.6726 -2.9814 20 6 8.0154 2.9693 -1.5643 21 7 8.2373 3.1692 -0.2825 22 14 8.9846 3.9289 -2.8408 23 1 8.0496 4.7216 -3.6791 24 1 9.9337 4.8436 -2.1569 25 1 9.7411 2.9842 -3.7011 26 6 5.6840 2.4583 0.0365 27 6 4.1576 2.5830 0.0013 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.6641 0.9669 2.1399 34 1 5.0727 0.3393 1.2507 35 1 2.8093 -1.1848 0.5227 36 1 2.9479 -5.8406 2.1959 37 1 2.8237 -6.0980 3.9530 38 1 1.5381 -5.2216 3.0889 39 1 5.3757 -3.4079 3.6249 40 1 5.0649 -5.0388 4.2661 41 1 5.1883 -4.7816 2.5089 42 1 1.8006 -3.2926 4.6562 43 1 3.0869 -4.1693 5.5198 44 1 3.3974 -2.5383 4.8789 45 1 3.5253 -0.5628 -1.2602 46 1 3.6880 0.9772 -2.1389 47 1 5.8472 -0.1775 -2.1603 48 1 5.8075 -0.3547 -0.3884 49 1 8.9043 3.8146 -0.0006 50 1 6.1337 3.4463 -0.0627 51 1 5.9923 2.0097 0.9808 52 1 3.8568 3.1155 -0.9011 53 1 3.8166 3.1325 0.8787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162176214.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:18 Heat of formation + Delta-G solvation = -116.661713 kcal Electronic energy + Delta-G solvation = -32447.155277 eV Core-core repulsion = 28319.134187 eV Total energy + Delta-G solvation = -4128.021090 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.00989 -40.84605 -39.35487 -38.32400 -37.02884 -36.01846 -34.49082 -32.88427 -31.52303 -29.03859 -28.73353 -28.24200 -27.93976 -27.09028 -25.84789 -25.52024 -23.89682 -22.56992 -22.19881 -20.59547 -19.58294 -18.76325 -18.13017 -17.41230 -17.24776 -17.08749 -16.81882 -16.62775 -16.40934 -16.20410 -15.62486 -15.50005 -15.35934 -15.19035 -14.92281 -14.66590 -14.44924 -14.20397 -13.99598 -13.76332 -13.48767 -13.35070 -13.10177 -13.03121 -13.02310 -12.96161 -12.70628 -12.56778 -12.55493 -12.53615 -12.46202 -12.14066 -12.00085 -11.92853 -11.85495 -11.73149 -11.53393 -11.25604 -11.13372 -10.58365 -10.51782 -10.29825 -10.05786 -8.66061 -7.86268 -5.31155 -0.06499 1.47635 1.49169 1.56399 1.75264 1.97408 2.52040 2.69120 3.23265 3.30547 3.57015 3.61480 3.71035 3.86715 3.88945 3.90483 3.94275 4.24166 4.29991 4.42091 4.46770 4.54272 4.56310 4.60504 4.63723 4.68374 4.71176 4.73500 4.74302 4.84716 4.89452 4.91002 4.92767 4.94136 4.97093 5.01383 5.11435 5.18735 5.20743 5.23475 5.27839 5.33425 5.35169 5.45702 5.49982 5.65027 5.78190 5.81839 6.21097 6.39784 6.52808 7.05981 7.16130 7.86986 8.38856 9.19687 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.003314 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.030415 B = 8447.960756 C = 9606.180085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.409 6.409 3 C 0.078 3.922 4 C -0.052 4.052 5 C 0.135 3.865 6 N -0.677 5.677 7 C 0.458 3.542 8 O -0.539 6.539 9 C 0.365 3.635 10 O -0.430 6.430 11 C -0.094 4.094 12 C -0.131 4.131 13 C -0.143 4.143 14 C -0.139 4.139 15 C -0.105 4.105 16 C 0.142 3.858 17 N -0.606 5.606 18 C -0.265 4.265 19 H 0.065 0.935 20 C -0.048 4.048 21 N -0.933 5.933 22 Si 0.966 3.034 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.278 1.278 26 C 0.177 3.823 27 C -0.114 4.114 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.420 0.580 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.004 0.996 49 H 0.250 0.750 50 H 0.057 0.943 51 H -0.002 1.002 52 H 0.068 0.932 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.081 -11.736 6.479 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.329 6.329 3 C 0.002 3.998 4 C -0.053 4.053 5 C 0.012 3.988 6 N -0.335 5.335 7 C 0.241 3.759 8 O -0.418 6.418 9 C 0.235 3.765 10 O -0.300 6.300 11 C -0.095 4.095 12 C -0.188 4.188 13 C -0.200 4.200 14 C -0.196 4.196 15 C -0.144 4.144 16 C 0.017 3.983 17 N -0.330 5.330 18 C -0.395 4.395 19 H 0.083 0.917 20 C -0.244 4.244 21 N -0.579 5.579 22 Si 0.794 3.206 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.204 1.204 26 C 0.051 3.949 27 C -0.154 4.154 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.264 0.736 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.022 0.978 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.016 0.984 52 H 0.087 0.913 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.766 -11.746 6.641 22.310 hybrid contribution 0.756 0.972 -0.866 1.505 sum -17.011 -10.774 5.776 20.948 Atomic orbital electron populations 1.22872 0.79315 1.03480 1.00860 1.87505 1.21452 1.28382 1.95536 1.22603 0.91079 0.84602 1.01515 1.20695 0.94085 0.96131 0.94340 1.21388 0.97448 0.82109 0.97865 1.46330 1.48171 1.14045 1.25000 1.21368 0.83066 0.88124 0.83327 1.90699 1.37147 1.77809 1.36110 1.25193 0.77015 0.87391 0.86870 1.90383 1.27972 1.76888 1.34730 1.21047 0.99174 0.95136 0.94183 1.21771 0.99978 0.94075 1.02945 1.21909 0.91739 1.03122 1.03251 1.21883 1.01212 1.02099 0.94440 1.21822 0.95763 0.99934 0.96846 1.21013 0.92757 0.86751 0.97802 1.44277 1.44838 1.12681 1.31185 1.19471 1.05903 1.22430 0.91702 0.91746 1.25761 0.98200 1.03017 0.97390 1.70185 1.35572 1.37127 1.15019 0.85363 0.78088 0.78499 0.78601 1.20228 1.22092 1.20435 1.20601 0.90672 0.95395 0.88195 1.21973 0.96875 0.94267 1.02269 0.93432 0.92804 0.89043 0.91986 0.91537 0.91569 0.93046 0.73586 0.92545 0.89140 0.92045 0.92413 0.88769 0.92668 0.92034 0.88934 0.92209 0.91066 0.91597 0.93339 0.97807 0.94114 0.92505 0.98447 0.91316 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.41 -9.43 6.73 -148.98 -1.00 -10.43 16 3 C 0.08 1.84 4.80 71.98 0.35 2.19 16 4 C -0.05 -1.59 0.51 -52.16 -0.03 -1.61 16 5 C 0.14 4.55 3.81 86.38 0.33 4.88 16 6 N -0.68 -20.87 4.62 -464.81 -2.15 -23.02 16 7 C 0.46 14.35 7.55 87.16 0.66 15.01 16 8 O -0.54 -19.30 13.39 -3.29 -0.04 -19.34 16 9 C 0.37 9.57 6.03 28.60 0.17 9.74 16 10 O -0.43 -11.93 16.09 -1.52 -0.02 -11.96 16 11 C -0.09 -1.90 0.76 -52.93 -0.04 -1.94 16 12 C -0.13 -2.06 7.76 71.98 0.56 -1.50 16 13 C -0.14 -2.90 8.29 71.98 0.60 -2.30 16 14 C -0.14 -2.50 8.29 71.98 0.60 -1.91 16 15 C -0.10 -3.48 4.59 30.66 0.14 -3.34 16 16 C 0.14 6.06 6.04 86.35 0.52 6.58 16 17 N -0.61 -30.42 2.99 -699.13 -2.09 -32.51 16 18 C -0.26 -14.65 9.58 84.03 0.81 -13.84 16 19 H 0.06 3.48 7.89 -2.91 -0.02 3.46 16 20 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 21 N -0.93 -55.45 11.19 21.65 0.24 -55.21 16 22 Si 0.97 44.99 29.59 68.60 2.03 47.02 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 C 0.18 8.36 4.84 86.36 0.42 8.77 16 27 C -0.11 -3.96 4.91 30.67 0.15 -3.81 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.05 2.15 4.99 -2.39 -0.01 2.14 16 35 H 0.42 12.29 4.17 -92.70 -0.39 11.91 16 36 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 37 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 39 H 0.06 1.48 6.43 -2.39 -0.02 1.47 16 40 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.06 1.37 6.43 -2.39 -0.02 1.35 16 45 H 0.07 2.17 6.50 -2.39 -0.02 2.16 16 46 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 47 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 48 H 0.00 0.18 6.70 -2.39 -0.02 0.17 16 49 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 50 H 0.06 3.05 6.04 -2.39 -0.01 3.04 16 51 H 0.00 -0.13 6.70 -2.39 -0.02 -0.14 16 52 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 53 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -67.02 401.86 4.36 -62.66 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.51 Total: 26.41 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 6.89 Total: 16.38 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -4.00 Total: -110.74 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -1.07 Total: -41.73 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -67.02 4.36 -62.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162176214.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.004 kcal (2) G-P(sol) polarization free energy of solvation -67.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds