Wall clock time and date at job start Sat Apr 11 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47076 * 2 1 4 4 C 1.52999 * 109.47132 * 119.99888 * 2 1 3 5 5 O 1.42903 * 109.46989 * 175.00156 * 4 2 1 6 6 C 1.42900 * 113.99671 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47150 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47464 * 179.97438 * 7 6 5 9 9 O 1.21290 * 119.99800 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00393 * 179.97438 * 8 7 6 11 11 C 1.46988 * 120.72123 * 0.02562 * 10 8 7 12 12 C 1.53159 * 108.43777 * 125.42289 * 11 10 8 13 13 C 1.52505 * 109.79796 * 54.53489 * 12 11 10 14 14 H 1.09003 * 108.93109 * 180.33887 * 13 12 11 15 15 O 1.42686 * 110.62391 * 61.30541 * 13 12 11 16 16 C 1.43076 * 113.88020 * 174.65524 * 15 13 12 17 17 C 1.53233 * 109.44263 * 61.64679 * 16 15 13 18 18 N 1.47169 * 108.69417 * 308.40967 * 17 16 15 19 19 C 1.36932 * 121.22327 * 230.97314 * 18 17 16 20 20 H 1.08003 * 120.00426 * 153.52126 * 19 18 17 21 21 C 1.38820 * 120.00132 * 333.52247 * 19 18 17 22 22 N 1.31617 * 119.99830 * 343.46225 * 21 19 18 23 23 Si 1.86796 * 120.00199 * 163.46343 * 21 19 18 24 24 H 1.48507 * 109.47067 * 89.99831 * 23 21 19 25 25 H 1.48490 * 109.47413 * 210.00085 * 23 21 19 26 26 H 1.48506 * 109.47198 * 330.00110 * 23 21 19 27 27 C 1.47596 * 117.55730 * 50.95211 * 18 17 16 28 28 H 1.08992 * 111.16695 * 187.20297 * 27 18 17 29 29 C 1.46795 * 120.72464 * 179.97438 * 10 8 7 30 30 H 1.08998 * 109.47031 * 299.99930 * 1 2 3 31 31 H 1.08997 * 109.47115 * 59.99899 * 1 2 3 32 32 H 1.09003 * 109.47237 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47031 * 240.00070 * 2 1 3 34 34 H 1.09006 * 109.46994 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47287 * 299.99513 * 3 2 1 36 36 H 1.08998 * 109.47134 * 60.00133 * 3 2 1 37 37 H 1.08996 * 109.47339 * 55.00150 * 4 2 1 38 38 H 1.08999 * 109.47022 * 295.00201 * 4 2 1 39 39 H 1.08998 * 109.47484 * 59.99733 * 6 5 4 40 40 H 1.09006 * 109.47218 * 299.99537 * 6 5 4 41 41 H 1.08998 * 109.47119 * 59.99540 * 7 6 5 42 42 H 1.09006 * 109.46708 * 299.99881 * 7 6 5 43 43 H 1.09005 * 109.63756 * 5.74664 * 11 10 8 44 44 H 1.08990 * 109.81753 * 245.20950 * 11 10 8 45 45 H 1.09000 * 109.41632 * 294.43684 * 12 11 10 46 46 H 1.09001 * 109.35916 * 174.60169 * 12 11 10 47 47 H 1.09000 * 109.47277 * 301.65472 * 16 15 13 48 48 H 1.08999 * 109.47969 * 181.64578 * 16 15 13 49 49 H 1.09003 * 109.59295 * 188.64687 * 17 16 15 50 50 H 1.08996 * 109.73237 * 68.25396 * 17 16 15 51 51 H 0.96990 * 119.99815 * 179.97438 * 22 21 19 52 52 H 1.09000 * 109.51688 * 354.22724 * 29 10 8 53 53 H 1.08998 * 109.51867 * 114.34668 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 3.4642 -0.8237 1.1920 6 6 4.0449 -1.4855 2.3175 7 6 5.5648 -1.5382 2.1499 8 6 6.1773 -2.2355 3.3371 9 8 5.4680 -2.6501 4.2293 10 7 7.5132 -2.3994 3.4070 11 6 8.3877 -1.9038 2.3345 12 6 9.4474 -0.9897 2.9571 13 6 10.1799 -1.7315 4.0702 14 1 10.9255 -1.0670 4.5068 15 8 10.8491 -2.8805 3.5526 16 6 11.6588 -3.5619 4.5155 17 6 10.7736 -4.0695 5.6586 18 7 9.9579 -2.9503 6.1564 19 6 9.9055 -2.6486 7.4910 20 1 9.6868 -1.6398 7.8085 21 6 10.1335 -3.6396 8.4361 22 7 10.0767 -4.9074 8.0871 23 14 10.5210 -3.1737 10.2030 24 1 9.2575 -3.0732 10.9769 25 1 11.3915 -4.2128 10.8094 26 1 11.2220 -1.8648 10.2275 27 6 9.1987 -2.1645 5.1641 28 1 8.7359 -1.2915 5.6241 29 6 8.1267 -3.0758 4.5563 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -1.7197 1.2952 38 1 1.7516 -0.1583 2.1369 39 1 3.6519 -2.4999 2.3852 40 1 3.7982 -0.9388 3.2277 41 1 5.9582 -0.5239 2.0819 42 1 5.8112 -2.0852 1.2398 43 1 7.7976 -1.3409 1.6113 44 1 8.8742 -2.7427 1.8370 45 1 8.9646 -0.1035 3.3689 46 1 10.1617 -0.6900 2.1902 47 1 12.4067 -2.8753 4.9124 48 1 12.1571 -4.4062 4.0392 49 1 11.4005 -4.4518 6.4643 50 1 10.1217 -4.8635 5.2945 51 1 10.2364 -5.5997 8.7473 52 1 7.3628 -3.2882 5.3042 53 1 8.5844 -4.0090 4.2280 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176930158.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:22 Heat of formation + Delta-G solvation = -130.506784 kcal Electronic energy + Delta-G solvation = -31070.465278 eV Core-core repulsion = 26941.843820 eV Total energy + Delta-G solvation = -4128.621457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.56892 -40.19304 -39.16924 -37.17425 -36.45759 -36.05682 -33.67882 -33.10826 -32.44947 -30.92984 -29.26602 -27.98352 -27.21364 -26.25056 -25.64300 -24.64424 -23.88093 -22.90168 -21.24290 -20.68707 -19.62264 -18.92684 -18.50792 -17.51936 -17.28786 -17.09034 -16.95789 -16.69915 -16.54080 -16.14703 -15.96115 -15.68629 -15.44672 -15.06991 -14.87011 -14.72269 -14.37304 -14.08731 -14.00120 -13.78297 -13.72135 -13.39195 -13.37760 -13.09205 -12.96951 -12.84555 -12.65172 -12.48103 -12.41482 -12.31870 -12.22414 -12.09587 -11.89634 -11.85635 -11.72800 -11.67349 -11.49116 -11.21270 -10.88144 -10.77033 -10.59335 -10.52017 -9.70657 -8.72241 -7.94573 -5.41867 1.42564 1.43324 1.53224 1.58275 1.84323 2.43974 2.70425 2.90508 3.20224 3.44801 3.58874 3.83760 3.90864 3.96181 4.00431 4.05440 4.10161 4.15975 4.20748 4.27184 4.32278 4.41403 4.48889 4.51869 4.53849 4.60129 4.62320 4.65162 4.73316 4.81361 4.82729 4.84276 4.85152 4.88579 4.91953 4.99453 5.03684 5.06289 5.08043 5.23523 5.24760 5.31271 5.41897 5.46732 5.47403 5.55906 5.58831 6.18365 6.24839 6.35327 6.46330 7.02441 7.14115 7.69647 8.23967 9.10367 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016670 B = 0.002348 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.299534 B =11924.524358 C =12929.543266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.143 4.143 4 C 0.060 3.940 5 O -0.392 6.392 6 C 0.082 3.918 7 C -0.122 4.122 8 C 0.508 3.492 9 O -0.598 6.598 10 N -0.604 5.604 11 C 0.107 3.893 12 C -0.116 4.116 13 C 0.084 3.916 14 H 0.049 0.951 15 O -0.382 6.382 16 C 0.053 3.947 17 C 0.145 3.855 18 N -0.602 5.602 19 C -0.266 4.266 20 H 0.066 0.934 21 C -0.047 4.047 22 N -0.932 5.932 23 Si 0.970 3.030 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.268 1.268 27 C 0.131 3.869 28 H 0.063 0.937 29 C 0.124 3.876 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.113 0.887 47 H 0.046 0.954 48 H 0.108 0.892 49 H 0.066 0.934 50 H 0.001 0.999 51 H 0.252 0.748 52 H 0.040 0.960 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.231 11.616 -20.371 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.200 4.200 4 C -0.017 4.017 5 O -0.312 6.312 6 C 0.005 3.995 7 C -0.161 4.161 8 C 0.298 3.702 9 O -0.480 6.480 10 N -0.336 5.336 11 C -0.014 4.014 12 C -0.154 4.154 13 C 0.024 3.976 14 H 0.067 0.933 15 O -0.301 6.301 16 C -0.025 4.025 17 C 0.019 3.981 18 N -0.325 5.325 19 C -0.396 4.396 20 H 0.084 0.916 21 C -0.243 4.243 22 N -0.577 5.577 23 Si 0.797 3.203 24 H -0.216 1.216 25 H -0.215 1.215 26 H -0.192 1.192 27 C 0.023 3.977 28 H 0.081 0.919 29 C -0.001 4.001 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.131 0.869 47 H 0.065 0.935 48 H 0.126 0.874 49 H 0.085 0.915 50 H 0.019 0.981 51 H 0.061 0.939 52 H 0.059 0.941 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.453 11.279 -20.130 24.936 hybrid contribution 0.016 -0.735 2.350 2.463 sum -9.436 10.544 -17.780 22.723 Atomic orbital electron populations 1.21782 0.93176 1.02400 1.02822 1.21119 0.96385 0.96816 0.96864 1.21779 1.01302 0.95016 1.01947 1.22754 0.80188 0.99697 0.99015 1.87753 1.21138 1.79053 1.43222 1.21982 0.92710 0.96390 0.88428 1.21436 0.94306 1.03933 0.96409 1.21194 0.81782 0.79024 0.88191 1.90700 1.61642 1.52882 1.42749 1.48314 1.06073 1.57137 1.22076 1.22026 0.92024 0.98725 0.88627 1.21861 0.98106 0.97675 0.97770 1.22306 0.93700 0.87156 0.94389 0.93276 1.87728 1.63565 1.42494 1.36358 1.23148 0.92424 0.96650 0.90283 1.21296 0.92890 0.88772 0.95107 1.44510 1.50345 1.35259 1.02410 1.19452 1.44208 0.93439 0.82492 0.91587 1.25824 1.01617 0.95044 1.01848 1.70170 1.53396 0.99350 1.34795 0.85251 0.77543 0.77589 0.79890 1.21569 1.21469 1.19226 1.21729 0.91491 0.93965 0.90476 0.91893 1.21709 0.95078 0.95922 0.87395 0.92350 0.90956 0.92272 0.90507 0.92793 0.91682 0.92931 0.93204 0.93287 0.93804 0.93751 0.85324 0.85588 0.85524 0.90457 0.88909 0.86868 0.93549 0.87378 0.91536 0.98131 0.93902 0.94095 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.19 71.98 0.66 -0.84 16 2 C -0.09 -1.27 3.16 -10.79 -0.03 -1.30 16 3 C -0.14 -1.87 9.09 71.98 0.65 -1.22 16 4 C 0.06 1.04 5.32 71.98 0.38 1.42 16 5 O -0.39 -8.10 9.88 -148.98 -1.47 -9.57 16 6 C 0.08 1.90 5.23 71.98 0.38 2.27 16 7 C -0.12 -2.48 4.42 29.85 0.13 -2.34 16 8 C 0.51 16.10 7.70 87.66 0.67 16.78 16 9 O -0.60 -25.36 15.40 -3.06 -0.05 -25.40 16 10 N -0.60 -18.95 2.96 -819.01 -2.43 -21.38 16 11 C 0.11 2.26 6.18 86.34 0.53 2.79 16 12 C -0.12 -2.50 5.82 30.48 0.18 -2.32 16 13 C 0.08 2.74 2.73 30.49 0.08 2.82 16 14 H 0.05 1.66 8.11 -2.39 -0.02 1.64 16 15 O -0.38 -13.19 9.60 -148.98 -1.43 -14.62 16 16 C 0.05 1.95 6.97 72.06 0.50 2.45 16 17 C 0.14 6.95 4.93 86.33 0.43 7.37 16 18 N -0.60 -30.36 2.71 -672.45 -1.82 -32.19 16 19 C -0.27 -14.81 9.71 84.04 0.82 -13.99 16 20 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 21 C -0.05 -2.67 4.96 84.86 0.42 -2.25 16 22 N -0.93 -55.46 11.14 21.65 0.24 -55.22 16 23 Si 0.97 45.36 29.58 68.60 2.03 47.39 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 C 0.13 5.50 3.00 44.93 0.13 5.63 16 28 H 0.06 2.73 8.03 -2.39 -0.02 2.71 16 29 C 0.12 5.26 5.62 86.41 0.49 5.74 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 0.81 7.82 -2.38 -0.02 0.80 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 40 H 0.04 1.13 8.10 -2.38 -0.02 1.11 16 41 H 0.13 1.95 7.71 -2.39 -0.02 1.93 16 42 H 0.13 1.97 7.93 -2.38 -0.02 1.95 16 43 H 0.13 1.58 5.95 -2.38 -0.01 1.57 16 44 H 0.08 1.70 7.95 -2.39 -0.02 1.68 16 45 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.05 1.68 8.13 -2.39 -0.02 1.66 16 48 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 49 H 0.07 3.56 6.14 -2.39 -0.01 3.55 16 50 H 0.00 0.03 7.18 -2.39 -0.02 0.02 16 51 H 0.25 14.51 8.31 -92.72 -0.77 13.74 16 52 H 0.04 2.09 7.00 -2.39 -0.02 2.08 16 53 H 0.05 2.23 6.57 -2.39 -0.02 2.21 16 Total: -1.00 -73.05 407.08 2.36 -70.68 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.86 Total: 17.29 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 6.43 Total: 23.01 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.01 Total: -108.79 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -2.95 Total: -49.59 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -73.05 2.36 -70.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176930158.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.822 kcal (2) G-P(sol) polarization free energy of solvation -73.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds