Wall clock time and date at job start Sat Apr 11 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00160 * 2 1 4 4 C 1.53005 * 109.47009 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47163 * 300.00232 * 4 3 2 6 6 C 1.52994 * 109.47136 * 59.99915 * 4 3 2 7 7 C 1.52994 * 109.46958 * 180.02562 * 4 3 2 8 8 C 1.50708 * 109.47043 * 180.02562 * 7 4 3 9 9 O 1.21285 * 119.99787 * 359.97438 * 8 7 4 10 10 N 1.34781 * 119.99896 * 179.97438 * 8 7 4 11 11 C 1.46840 * 120.41125 * 359.72106 * 10 8 7 12 12 C 1.52906 * 109.49825 * 232.19321 * 11 10 8 13 13 C 1.52792 * 108.89354 * 306.41883 * 12 11 10 14 14 H 1.09001 * 109.34148 * 302.69955 * 13 12 11 15 15 O 1.42605 * 111.11130 * 182.39169 * 13 12 11 16 16 C 1.43144 * 113.63249 * 176.38418 * 15 13 12 17 17 C 1.53199 * 109.74292 * 61.68661 * 16 15 13 18 18 N 1.47352 * 108.79795 * 308.79121 * 17 16 15 19 19 C 1.36935 * 121.30749 * 230.25600 * 18 17 16 20 20 H 1.08000 * 120.00187 * 152.51581 * 19 18 17 21 21 C 1.38818 * 119.99897 * 332.51711 * 19 18 17 22 22 N 1.31612 * 119.99765 * 344.72623 * 21 19 18 23 23 Si 1.86799 * 119.99796 * 164.72455 * 21 19 18 24 24 H 1.48498 * 109.47369 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46886 * 120.00273 * 23 21 19 26 26 H 1.48503 * 109.47121 * 239.99885 * 23 21 19 27 27 C 1.46882 * 117.38890 * 50.23602 * 18 17 16 28 28 H 1.08997 * 110.20424 * 67.97277 * 27 18 17 29 29 C 1.47133 * 120.40742 * 180.02562 * 10 8 7 30 30 H 1.08994 * 109.46731 * 299.99985 * 1 2 3 31 31 H 1.09002 * 109.47109 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46876 * 59.99618 * 1 2 3 33 33 H 1.08994 * 109.47030 * 300.00013 * 3 2 1 34 34 H 1.09002 * 109.47196 * 60.00375 * 3 2 1 35 35 H 1.08999 * 109.47159 * 59.99788 * 5 4 3 36 36 H 1.08998 * 109.46733 * 180.02562 * 5 4 3 37 37 H 1.09000 * 109.46821 * 300.00133 * 5 4 3 38 38 H 1.09001 * 109.47032 * 60.00262 * 6 4 3 39 39 H 1.08998 * 109.47351 * 179.97438 * 6 4 3 40 40 H 1.09003 * 109.47656 * 300.00111 * 6 4 3 41 41 H 1.09001 * 109.47078 * 299.99657 * 7 4 3 42 42 H 1.09002 * 109.47537 * 60.00178 * 7 4 3 43 43 H 1.09002 * 109.50977 * 352.18820 * 11 10 8 44 44 H 1.08996 * 109.50374 * 112.32105 * 11 10 8 45 45 H 1.08997 * 109.65452 * 186.52666 * 12 11 10 46 46 H 1.08999 * 109.53840 * 66.23407 * 12 11 10 47 47 H 1.09002 * 109.43016 * 181.76997 * 16 15 13 48 48 H 1.09002 * 109.42962 * 301.66099 * 16 15 13 49 49 H 1.08996 * 109.58034 * 68.57944 * 17 16 15 50 50 H 1.08994 * 109.58345 * 189.00031 * 17 16 15 51 51 H 0.97002 * 120.00378 * 180.02562 * 22 21 19 52 52 H 1.09002 * 109.72381 * 246.42867 * 29 10 8 53 53 H 1.08993 * 109.72971 * 7.05441 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 3.9875 0.4249 1.2483 6 6 3.9865 0.4255 -1.2501 7 6 4.1579 2.5822 0.0000 8 6 5.6602 2.4631 -0.0013 9 8 6.1818 1.3681 -0.0021 10 7 6.4242 3.5735 -0.0015 11 6 5.8023 4.9037 -0.0067 12 6 6.3902 5.7375 -1.1456 13 6 7.9131 5.7393 -1.0225 14 1 8.1957 6.1272 -0.0438 15 8 8.5091 6.5509 -2.0323 16 6 9.9320 6.6570 -1.9175 17 6 10.5679 5.2710 -2.0642 18 7 9.8966 4.3403 -1.1398 19 6 10.6133 3.5428 -0.2881 20 1 10.1755 3.2179 0.6442 21 6 11.9026 3.1520 -0.6230 22 7 12.3293 3.2835 -1.8610 23 14 13.0316 2.4397 0.6836 24 1 12.3178 2.3972 1.9851 25 1 13.4328 1.0639 0.2945 26 1 14.2418 3.2911 0.8098 27 6 8.4286 4.3019 -1.1675 28 1 8.0807 3.8810 -2.1108 29 6 7.8918 3.4677 -0.0033 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8463 -0.8899 34 1 1.6887 1.8463 0.8900 35 1 3.5441 -0.5708 1.2483 36 1 5.0741 0.3393 1.2480 37 1 3.6662 0.9657 2.1385 38 1 3.6645 0.9666 -2.1399 39 1 5.0731 0.3397 -1.2509 40 1 3.5431 -0.5703 -1.2502 41 1 3.8360 3.1237 -0.8896 42 1 3.8367 3.1226 0.8904 43 1 4.7265 4.8020 -0.1495 44 1 5.9986 5.4009 0.9432 45 1 6.0173 6.7598 -1.0818 46 1 6.1016 5.3024 -2.1024 47 1 10.3109 7.3144 -2.7001 48 1 10.1872 7.0705 -0.9418 49 1 10.4458 4.9197 -3.0888 50 1 11.6284 5.3278 -1.8192 51 1 13.2301 3.0101 -2.0952 52 1 8.2893 3.8500 0.9369 53 1 8.1854 2.4258 -0.1303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177055864.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:45 Heat of formation + Delta-G solvation = -118.314841 kcal Electronic energy + Delta-G solvation = -32115.505888 eV Core-core repulsion = 27987.413113 eV Total energy + Delta-G solvation = -4128.092775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = -0.59 seconds Orbital eigenvalues (eV) -41.67063 -40.42843 -39.09685 -37.56525 -36.55201 -36.18977 -33.55546 -32.99638 -31.53021 -29.74602 -28.55974 -28.17262 -28.10826 -26.62547 -26.00190 -25.43869 -23.65498 -22.83331 -21.47688 -20.63923 -19.48325 -18.67336 -18.38415 -17.30175 -17.16246 -17.05458 -16.71009 -16.58702 -16.47232 -16.17987 -16.00773 -15.58400 -15.45031 -14.98007 -14.77453 -14.69918 -14.59988 -14.46049 -14.08934 -13.99063 -13.52497 -13.31436 -13.05802 -12.97546 -12.86258 -12.66133 -12.62336 -12.45282 -12.38505 -12.34122 -12.23195 -12.04774 -11.91944 -11.83751 -11.65387 -11.63243 -11.54680 -11.23237 -10.76501 -10.53793 -10.48870 -10.39720 -9.59443 -8.75699 -7.93546 -5.42097 1.41585 1.43947 1.53837 1.69963 1.94683 2.44929 2.83129 2.94037 3.21908 3.45137 3.57150 3.81509 3.88099 3.94649 4.02125 4.09687 4.15763 4.20140 4.30922 4.40226 4.44447 4.50537 4.51183 4.52840 4.56466 4.58366 4.63506 4.66103 4.68494 4.73255 4.85340 4.85490 4.88277 4.92200 4.98976 5.02647 5.12460 5.12719 5.13579 5.14369 5.30707 5.32923 5.45627 5.52688 5.52946 5.59457 5.67955 6.24649 6.33568 6.35746 6.51790 7.02934 7.30160 7.70883 8.25983 9.12854 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.003086 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.169423 B = 9070.062309 C =10440.564846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.075 3.925 4 C -0.043 4.043 5 C -0.144 4.144 6 C -0.145 4.145 7 C -0.121 4.121 8 C 0.506 3.494 9 O -0.571 6.571 10 N -0.613 5.613 11 C 0.109 3.891 12 C -0.117 4.117 13 C 0.079 3.921 14 H 0.055 0.945 15 O -0.393 6.393 16 C 0.053 3.947 17 C 0.146 3.854 18 N -0.606 5.606 19 C -0.258 4.258 20 H 0.074 0.926 21 C -0.049 4.049 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.265 1.265 25 H -0.296 1.296 26 H -0.284 1.284 27 C 0.135 3.865 28 H 0.002 0.998 29 C 0.140 3.860 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.066 0.934 47 H 0.108 0.892 48 H 0.050 0.950 49 H -0.005 1.005 50 H 0.069 0.931 51 H 0.251 0.749 52 H 0.067 0.933 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.611 5.672 5.338 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.002 4.002 4 C -0.044 4.044 5 C -0.201 4.201 6 C -0.202 4.202 7 C -0.161 4.161 8 C 0.297 3.703 9 O -0.451 6.451 10 N -0.347 5.347 11 C -0.013 4.013 12 C -0.156 4.156 13 C 0.020 3.980 14 H 0.073 0.927 15 O -0.312 6.312 16 C -0.025 4.025 17 C 0.020 3.980 18 N -0.331 5.331 19 C -0.387 4.387 20 H 0.092 0.908 21 C -0.245 4.245 22 N -0.582 5.582 23 Si 0.794 3.206 24 H -0.190 1.190 25 H -0.224 1.224 26 H -0.211 1.211 27 C 0.027 3.973 28 H 0.020 0.980 29 C 0.017 3.983 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.141 0.859 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.108 0.892 45 H 0.133 0.867 46 H 0.085 0.915 47 H 0.126 0.874 48 H 0.068 0.932 49 H 0.013 0.987 50 H 0.087 0.913 51 H 0.060 0.940 52 H 0.086 0.914 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.194 4.977 5.162 25.234 hybrid contribution 1.679 -0.895 0.120 1.906 sum -22.515 4.083 5.281 23.483 Atomic orbital electron populations 1.22879 0.79813 1.03385 1.00876 1.87871 1.21005 1.28781 1.95577 1.22582 0.91410 0.84547 1.01636 1.20243 0.93604 0.94161 0.96357 1.21928 1.01795 0.99977 0.96381 1.21938 1.01674 1.00063 0.96568 1.21773 0.88556 0.98579 1.07170 1.21373 0.91057 0.83057 0.74845 1.90619 1.75955 1.27676 1.50854 1.48402 1.05553 1.07703 1.73028 1.21989 0.99644 0.80541 0.99077 1.21826 0.90854 1.02908 0.99972 1.22557 0.94879 0.89617 0.90938 0.92671 1.87745 1.20652 1.69624 1.53148 1.23158 0.80496 0.97187 1.01653 1.21300 0.97504 0.88067 0.91079 1.44342 1.00009 1.44294 1.44446 1.19464 0.96777 1.24607 0.97894 0.90823 1.25839 1.01014 1.00081 0.97544 1.70176 1.17838 1.52535 1.17665 0.85229 0.78945 0.77159 0.79293 1.18954 1.22375 1.21051 1.21428 0.84884 0.95557 0.95400 0.98008 1.21184 0.79551 1.00087 0.97519 0.92970 0.89374 0.93180 0.91664 0.91240 0.93406 0.92878 0.92150 0.92701 0.93113 0.93298 0.85892 0.85192 0.84845 0.89169 0.86745 0.91507 0.87365 0.93180 0.98726 0.91251 0.94001 0.91441 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.88 9.35 -148.98 -1.39 -9.28 16 3 C 0.07 1.12 4.81 71.98 0.35 1.47 16 4 C -0.04 -0.89 0.60 -52.18 -0.03 -0.92 16 5 C -0.14 -3.53 8.03 71.98 0.58 -2.95 16 6 C -0.15 -3.80 8.03 71.98 0.58 -3.22 16 7 C -0.12 -2.04 3.11 29.85 0.09 -1.95 16 8 C 0.51 14.45 7.11 87.66 0.62 15.07 16 9 O -0.57 -22.05 10.75 -3.05 -0.03 -22.08 16 10 N -0.61 -17.37 2.99 -819.61 -2.45 -19.82 16 11 C 0.11 1.90 6.29 86.28 0.54 2.45 16 12 C -0.12 -2.60 5.81 30.49 0.18 -2.42 16 13 C 0.08 2.67 2.48 30.65 0.08 2.75 16 14 H 0.06 1.85 8.13 -2.39 -0.02 1.83 16 15 O -0.39 -14.58 10.49 -148.98 -1.56 -16.14 16 16 C 0.05 2.02 6.95 72.05 0.50 2.52 16 17 C 0.15 7.23 5.42 86.28 0.47 7.70 16 18 N -0.61 -31.11 3.04 -673.98 -2.05 -33.15 16 19 C -0.26 -14.26 8.87 84.04 0.75 -13.51 16 20 H 0.07 3.97 6.27 -2.91 -0.02 3.95 16 21 C -0.05 -2.80 4.99 84.86 0.42 -2.38 16 22 N -0.94 -56.39 11.16 21.65 0.24 -56.15 16 23 Si 0.97 45.81 29.58 68.60 2.03 47.84 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 27 C 0.13 5.78 3.02 45.03 0.14 5.92 16 28 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 29 C 0.14 5.51 4.49 86.24 0.39 5.90 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 1.24 7.68 -2.39 -0.02 1.22 16 36 H 0.05 1.68 5.51 -2.39 -0.01 1.67 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.71 5.51 -2.39 -0.01 1.70 16 40 H 0.05 1.33 7.68 -2.39 -0.02 1.31 16 41 H 0.12 1.41 7.65 -2.39 -0.02 1.39 16 42 H 0.13 1.28 7.97 -2.39 -0.02 1.27 16 43 H 0.13 1.15 5.91 -2.39 -0.01 1.14 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 47 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 48 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 49 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 50 H 0.07 3.76 6.23 -2.39 -0.01 3.75 16 51 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 52 H 0.07 2.65 7.37 -2.39 -0.02 2.63 16 53 H 0.06 2.77 6.80 -2.39 -0.02 2.75 16 Total: -1.00 -76.74 394.69 2.55 -74.19 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.88 Total: 16.61 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 6.89 Total: 17.97 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -4.26 Total: -109.12 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -2.99 Total: -47.49 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -76.74 2.55 -74.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177055864.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.123 kcal (2) G-P(sol) polarization free energy of solvation -76.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.59 seconds