Wall clock time and date at job start Sat Apr 11 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00459 * 2 1 4 4 C 1.52992 * 109.47424 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47542 * 59.99524 * 4 3 2 6 6 C 1.53000 * 109.47005 * 299.99628 * 4 3 2 7 7 C 1.53003 * 109.47347 * 179.97438 * 4 3 2 8 8 C 1.50693 * 109.47464 * 179.97438 * 7 4 3 9 9 O 1.21290 * 119.99800 * 0.02562 * 8 7 4 10 10 N 1.34773 * 120.00393 * 179.97438 * 8 7 4 11 11 C 1.46988 * 120.72123 * 0.02562 * 10 8 7 12 12 C 1.53159 * 108.43777 * 125.42289 * 11 10 8 13 13 C 1.52505 * 109.79796 * 54.53489 * 12 11 10 14 14 H 1.09003 * 108.93109 * 180.33887 * 13 12 11 15 15 O 1.42686 * 110.62391 * 61.30541 * 13 12 11 16 16 C 1.43076 * 113.88020 * 174.65524 * 15 13 12 17 17 C 1.53233 * 109.44263 * 61.64679 * 16 15 13 18 18 N 1.47169 * 108.69417 * 308.40967 * 17 16 15 19 19 C 1.36932 * 121.22327 * 230.97314 * 18 17 16 20 20 H 1.08003 * 120.00426 * 153.52126 * 19 18 17 21 21 C 1.38820 * 120.00132 * 333.52247 * 19 18 17 22 22 N 1.31617 * 119.99830 * 343.46225 * 21 19 18 23 23 Si 1.86796 * 120.00199 * 163.46343 * 21 19 18 24 24 H 1.48507 * 109.47067 * 89.99831 * 23 21 19 25 25 H 1.48490 * 109.47413 * 210.00085 * 23 21 19 26 26 H 1.48506 * 109.47198 * 330.00110 * 23 21 19 27 27 C 1.47596 * 117.55730 * 50.95211 * 18 17 16 28 28 H 1.08992 * 111.16695 * 187.20297 * 27 18 17 29 29 C 1.46795 * 120.72464 * 179.97438 * 10 8 7 30 30 H 1.08999 * 109.46610 * 300.00499 * 1 2 3 31 31 H 1.08996 * 109.46864 * 59.99708 * 1 2 3 32 32 H 1.08990 * 109.47079 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47219 * 59.99624 * 3 2 1 34 34 H 1.09006 * 109.46531 * 300.00012 * 3 2 1 35 35 H 1.08992 * 109.47571 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.46691 * 300.00504 * 5 4 3 37 37 H 1.09000 * 109.46590 * 59.99971 * 5 4 3 38 38 H 1.09007 * 109.47146 * 300.00046 * 6 4 3 39 39 H 1.08996 * 109.47225 * 60.00023 * 6 4 3 40 40 H 1.09005 * 109.47569 * 180.02562 * 6 4 3 41 41 H 1.08998 * 109.47119 * 59.99525 * 7 4 3 42 42 H 1.09006 * 109.46708 * 299.99866 * 7 4 3 43 43 H 1.09005 * 109.63756 * 5.74664 * 11 10 8 44 44 H 1.08990 * 109.81753 * 245.20950 * 11 10 8 45 45 H 1.09000 * 109.41632 * 294.43684 * 12 11 10 46 46 H 1.09001 * 109.35916 * 174.60169 * 12 11 10 47 47 H 1.09000 * 109.47277 * 301.65472 * 16 15 13 48 48 H 1.08999 * 109.47969 * 181.64578 * 16 15 13 49 49 H 1.09003 * 109.59295 * 188.64687 * 17 16 15 50 50 H 1.08996 * 109.73237 * 68.25396 * 17 16 15 51 51 H 0.96990 * 119.99815 * 179.97438 * 22 21 19 52 52 H 1.09000 * 109.51688 * 354.22724 * 29 10 8 53 53 H 1.08997 * 109.51955 * 114.41074 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9865 0.4254 -1.2501 6 6 3.9874 0.4251 1.2483 7 6 4.1579 2.5823 -0.0013 8 6 5.6601 2.4633 -0.0013 9 8 6.1817 1.3682 -0.0013 10 7 6.4241 3.5735 -0.0023 11 6 5.8089 4.9084 -0.0029 12 6 6.3714 5.7016 1.1804 13 6 7.8951 5.7141 1.1162 14 1 8.2803 6.2764 1.9669 15 8 8.3425 6.3474 -0.0816 16 6 9.7624 6.5057 -0.1574 17 6 10.4313 5.1273 -0.1349 18 7 9.9125 4.3700 1.0154 19 6 10.7580 3.7655 1.9069 20 1 10.4379 3.5946 2.9242 21 6 12.0267 3.3723 1.5033 22 7 12.3084 3.2740 0.2214 23 14 13.3339 2.9826 2.7794 24 1 13.2694 1.5410 3.1299 25 1 14.6754 3.2980 2.2262 26 1 13.0962 3.7991 3.9969 27 6 8.4474 4.2863 1.1731 28 1 8.1796 3.8147 2.1185 29 6 7.8888 3.4760 -0.0018 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 5.0731 0.3397 -1.2508 36 1 3.5431 -0.5703 -1.2500 37 1 3.6645 0.9665 -2.1399 38 1 3.6661 0.9660 2.1386 39 1 3.5441 -0.5706 1.2484 40 1 5.0741 0.3394 1.2482 41 1 3.8366 3.1235 0.8886 42 1 3.8359 3.1229 -0.8914 43 1 4.7279 4.8136 0.1004 44 1 6.0442 5.4234 -0.9342 45 1 6.0518 5.2367 2.1130 46 1 5.9986 6.7251 1.1392 47 1 10.1087 7.0917 0.6939 48 1 10.0219 7.0206 -1.0825 49 1 11.5105 5.2462 -0.0378 50 1 10.2039 4.5928 -1.0572 51 1 13.1949 2.9996 -0.0606 52 1 8.1843 2.4320 0.1028 53 1 8.2807 3.8744 -0.9376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177055865.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:50 Heat of formation + Delta-G solvation = -117.038683 kcal Electronic energy + Delta-G solvation = -32228.809155 eV Core-core repulsion = 28100.771718 eV Total energy + Delta-G solvation = -4128.037437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.66181 -40.45372 -39.05346 -37.27443 -36.47519 -36.14573 -33.54136 -33.04240 -31.21634 -29.82994 -28.72174 -28.17397 -28.11075 -26.41557 -25.72444 -25.55802 -24.34934 -22.89363 -21.25392 -20.03090 -19.40834 -18.88802 -18.23335 -17.28244 -17.10733 -16.96875 -16.71073 -16.64370 -16.53231 -16.25866 -15.95720 -15.66380 -15.40712 -14.88898 -14.80460 -14.70843 -14.47291 -14.32416 -14.03939 -13.91015 -13.42799 -13.36361 -13.07428 -13.04521 -12.84101 -12.68671 -12.60267 -12.47113 -12.42867 -12.22905 -12.19165 -12.13106 -11.89056 -11.82175 -11.64979 -11.56888 -11.52936 -11.16651 -10.77569 -10.52904 -10.48862 -10.36245 -9.58631 -8.70493 -7.94068 -5.41169 1.42563 1.43361 1.53199 1.73905 2.02644 2.45320 2.89556 2.95600 3.20796 3.46507 3.58773 3.85010 3.87928 3.98536 4.04655 4.12460 4.18902 4.23899 4.32810 4.41944 4.47851 4.52246 4.52850 4.54855 4.58958 4.63521 4.65625 4.67554 4.68592 4.84250 4.85055 4.88534 4.92293 4.94771 4.98662 5.01788 5.07737 5.13442 5.13864 5.24813 5.30524 5.33709 5.48782 5.52808 5.56499 5.58968 5.69277 6.25627 6.35865 6.36149 6.60504 7.03273 7.34437 7.70706 8.24845 9.10892 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015920 B = 0.002953 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.366422 B = 9479.701121 C =10547.157054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.075 3.925 4 C -0.043 4.043 5 C -0.145 4.145 6 C -0.144 4.144 7 C -0.120 4.120 8 C 0.504 3.496 9 O -0.577 6.577 10 N -0.608 5.608 11 C 0.108 3.892 12 C -0.116 4.116 13 C 0.084 3.916 14 H 0.047 0.953 15 O -0.382 6.382 16 C 0.053 3.947 17 C 0.145 3.855 18 N -0.603 5.603 19 C -0.265 4.265 20 H 0.066 0.934 21 C -0.047 4.047 22 N -0.932 5.932 23 Si 0.969 3.031 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.267 1.267 27 C 0.132 3.868 28 H 0.061 0.939 29 C 0.127 3.873 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.112 0.888 47 H 0.046 0.954 48 H 0.108 0.892 49 H 0.066 0.934 50 H 0.000 1.000 51 H 0.252 0.748 52 H 0.039 0.961 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.528 5.880 -0.493 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.001 4.001 4 C -0.044 4.044 5 C -0.202 4.202 6 C -0.201 4.201 7 C -0.159 4.159 8 C 0.294 3.706 9 O -0.457 6.457 10 N -0.341 5.341 11 C -0.013 4.013 12 C -0.154 4.154 13 C 0.025 3.975 14 H 0.065 0.935 15 O -0.301 6.301 16 C -0.025 4.025 17 C 0.020 3.980 18 N -0.326 5.326 19 C -0.395 4.395 20 H 0.083 0.917 21 C -0.243 4.243 22 N -0.578 5.578 23 Si 0.796 3.204 24 H -0.216 1.216 25 H -0.215 1.215 26 H -0.192 1.192 27 C 0.025 3.975 28 H 0.079 0.921 29 C 0.001 3.999 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.130 0.870 47 H 0.064 0.936 48 H 0.126 0.874 49 H 0.084 0.916 50 H 0.018 0.982 51 H 0.061 0.939 52 H 0.058 0.942 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -24.098 5.172 -0.696 24.657 hybrid contribution 1.783 -0.799 0.486 2.014 sum -22.315 4.373 -0.209 22.741 Atomic orbital electron populations 1.22879 0.79797 1.03397 1.00884 1.87870 1.21024 1.28764 1.95577 1.22573 0.91365 0.84546 1.01630 1.20242 0.93619 0.94140 0.96363 1.21933 1.01696 1.00040 0.96501 1.21929 1.01686 1.00012 0.96493 1.21749 0.88646 0.98529 1.07019 1.21372 0.91044 0.83085 0.75070 1.90610 1.76024 1.27757 1.51338 1.48370 1.05680 1.07555 1.72515 1.21977 0.99342 0.80717 0.99259 1.21860 0.90688 1.03094 0.99769 1.22306 0.96195 0.91719 0.87327 0.93514 1.87725 1.21937 1.79505 1.40943 1.23140 0.80818 0.96677 1.01849 1.21284 0.98595 0.89950 0.88191 1.44513 0.99966 1.59002 1.29130 1.19441 0.95567 1.33362 0.91152 0.91661 1.25808 1.01457 0.99436 0.97577 1.70171 1.21061 1.51509 1.15016 0.85266 0.78453 0.77739 0.78913 1.21603 1.21450 1.19218 1.21711 0.84272 0.95404 0.96152 0.92089 1.21617 0.79751 0.99392 0.99102 0.93062 0.93077 0.89349 0.91407 0.91505 0.93084 0.93283 0.92444 0.92352 0.93328 0.93103 0.85571 0.85849 0.85418 0.90805 0.88957 0.86998 0.93607 0.87417 0.91606 0.98215 0.93927 0.94220 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -8.04 9.35 -148.98 -1.39 -9.43 16 3 C 0.08 1.17 4.81 71.98 0.35 1.52 16 4 C -0.04 -0.92 0.60 -52.18 -0.03 -0.95 16 5 C -0.14 -3.77 8.03 71.98 0.58 -3.20 16 6 C -0.14 -3.77 8.03 71.98 0.58 -3.19 16 7 C -0.12 -2.17 3.12 29.85 0.09 -2.07 16 8 C 0.50 15.21 7.11 87.66 0.62 15.83 16 9 O -0.58 -23.28 10.76 -3.06 -0.03 -23.31 16 10 N -0.61 -18.52 2.96 -819.01 -2.43 -20.95 16 11 C 0.11 2.18 6.18 86.34 0.53 2.71 16 12 C -0.12 -2.43 5.82 30.48 0.18 -2.25 16 13 C 0.08 2.73 2.73 30.49 0.08 2.81 16 14 H 0.05 1.58 8.11 -2.39 -0.02 1.56 16 15 O -0.38 -13.14 9.59 -148.98 -1.43 -14.57 16 16 C 0.05 1.96 6.97 72.06 0.50 2.46 16 17 C 0.15 7.00 4.93 86.33 0.43 7.43 16 18 N -0.60 -30.50 2.71 -672.45 -1.82 -32.32 16 19 C -0.27 -14.83 9.71 84.04 0.82 -14.02 16 20 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 21 C -0.05 -2.66 4.96 84.86 0.42 -2.24 16 22 N -0.93 -55.77 11.14 21.65 0.24 -55.53 16 23 Si 0.97 45.58 29.58 68.60 2.03 47.61 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 C 0.13 5.53 3.00 44.93 0.13 5.67 16 28 H 0.06 2.65 8.03 -2.39 -0.02 2.63 16 29 C 0.13 5.33 5.62 86.41 0.49 5.81 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.05 1.71 5.51 -2.39 -0.01 1.70 16 36 H 0.05 1.32 7.68 -2.39 -0.02 1.31 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.05 1.32 7.68 -2.39 -0.02 1.30 16 40 H 0.05 1.72 5.51 -2.38 -0.01 1.70 16 41 H 0.13 1.48 7.71 -2.39 -0.02 1.46 16 42 H 0.12 1.51 7.93 -2.38 -0.02 1.49 16 43 H 0.13 1.36 5.95 -2.38 -0.01 1.35 16 44 H 0.07 1.58 7.95 -2.39 -0.02 1.56 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.05 1.66 8.13 -2.39 -0.02 1.65 16 48 H 0.11 3.39 8.14 -2.39 -0.02 3.38 16 49 H 0.07 3.54 6.14 -2.39 -0.01 3.53 16 50 H 0.00 -0.01 7.17 -2.39 -0.02 -0.03 16 51 H 0.25 14.57 8.31 -92.72 -0.77 13.80 16 52 H 0.04 2.03 7.00 -2.39 -0.02 2.01 16 53 H 0.04 2.03 6.56 -2.39 -0.02 2.01 16 Total: -1.00 -75.31 394.74 3.06 -72.26 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.88 Total: 18.35 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 7.01 Total: 17.89 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -4.01 Total: -108.79 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -2.86 Total: -47.31 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.31 3.06 -72.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177055865.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.783 kcal (2) G-P(sol) polarization free energy of solvation -75.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds