Wall clock time and date at job start Sat Apr 11 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47250 * 2 1 4 4 O 1.42901 * 109.47415 * 239.99593 * 2 1 3 5 5 C 1.53001 * 109.46896 * 119.99711 * 2 1 3 6 6 C 1.50701 * 109.47250 * 62.77487 * 5 2 1 7 7 O 1.21282 * 120.00017 * 6.16519 * 6 5 2 8 8 N 1.34773 * 120.00089 * 186.16132 * 6 5 2 9 9 C 1.48187 * 127.80033 * 0.03240 * 8 6 5 10 10 C 1.54514 * 104.64044 * 140.71795 * 9 8 6 11 11 H 1.08997 * 110.37702 * 264.84600 * 10 9 8 12 12 C 1.53002 * 110.37783 * 142.60498 * 10 9 8 13 13 N 1.46502 * 109.46973 * 67.96587 * 12 10 9 14 14 C 1.36936 * 119.99609 * 179.97438 * 13 12 10 15 15 H 1.07993 * 120.00326 * 0.27830 * 14 13 12 16 16 C 1.38809 * 119.99836 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99950 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00233 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47449 * 90.00153 * 18 16 14 20 20 H 1.48505 * 109.47226 * 210.00076 * 18 16 14 21 21 H 1.48496 * 109.47070 * 329.99538 * 18 16 14 22 22 C 1.53779 * 104.87542 * 23.72511 * 10 9 8 23 23 C 1.48262 * 127.79916 * 180.02562 * 8 6 5 24 24 C 1.52586 * 110.26882 * 241.00639 * 22 10 9 25 25 C 1.53208 * 109.20323 * 182.29792 * 24 22 10 26 26 O 1.42902 * 109.34115 * 56.66981 * 25 24 22 27 27 C 1.42919 * 114.22431 * 298.39192 * 26 25 24 28 28 C 1.52588 * 110.27969 * 118.84563 * 22 10 9 29 29 H 1.08998 * 109.47364 * 300.00347 * 1 2 3 30 30 H 1.09004 * 109.47037 * 60.00613 * 1 2 3 31 31 H 1.08998 * 109.46976 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47180 * 180.38989 * 3 2 1 33 33 H 1.09008 * 109.46686 * 300.38217 * 3 2 1 34 34 H 1.08992 * 109.47065 * 60.38151 * 3 2 1 35 35 H 0.96702 * 114.00159 * 59.99965 * 4 2 1 36 36 H 1.08997 * 109.47089 * 302.77672 * 5 2 1 37 37 H 1.09004 * 109.46826 * 182.77536 * 5 2 1 38 38 H 1.08995 * 110.40740 * 21.92653 * 9 8 6 39 39 H 1.09005 * 110.40581 * 259.50679 * 9 8 6 40 40 H 1.09000 * 109.47562 * 307.96416 * 12 10 9 41 41 H 1.09000 * 109.47220 * 187.96448 * 12 10 9 42 42 H 0.96995 * 119.99812 * 359.97438 * 13 12 10 43 43 H 0.97005 * 120.00516 * 179.97438 * 17 16 14 44 44 H 1.08995 * 110.43157 * 337.88685 * 23 8 6 45 45 H 1.09006 * 110.42529 * 100.25513 * 23 8 6 46 46 H 1.08996 * 109.51786 * 302.21299 * 24 22 10 47 47 H 1.08997 * 109.51951 * 62.38033 * 24 22 10 48 48 H 1.09004 * 109.48964 * 296.71450 * 25 24 22 49 49 H 1.08998 * 109.51525 * 176.64951 * 25 24 22 50 50 H 1.08999 * 109.48609 * 301.65834 * 27 26 25 51 51 H 1.08990 * 109.52042 * 181.58693 * 27 26 25 52 52 H 1.08996 * 109.52042 * 297.61514 * 28 22 10 53 53 H 1.09000 * 109.51771 * 57.73230 * 28 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 1.5946 -2.1605 1.2155 7 8 1.0316 -2.5982 0.2344 8 7 1.8219 -2.9613 2.2754 9 6 2.4881 -2.6113 3.5519 10 6 1.6714 -3.3518 4.6345 11 1 0.9178 -2.6895 5.0607 12 6 2.5973 -3.8797 5.7322 13 7 3.1621 -2.7527 6.4786 14 6 4.0251 -2.9826 7.5165 15 1 4.2930 -3.9945 7.7821 16 6 4.5607 -1.9147 8.2233 17 7 4.2385 -0.6812 7.8962 18 14 5.7386 -2.2282 9.6388 19 1 7.1314 -2.2648 9.1250 20 1 5.6092 -1.1399 10.6409 21 1 5.4117 -3.5291 10.2760 22 6 1.0001 -4.5196 3.8928 23 6 1.4617 -4.3915 2.4275 24 6 -0.5184 -4.3986 3.9807 25 6 -1.1611 -5.6026 3.2845 26 8 -0.6760 -6.8079 3.8796 27 6 0.7358 -6.9946 3.7589 28 6 1.4617 -5.8519 4.4761 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0070 33 1 1.6711 1.9583 -0.8866 34 1 1.6823 1.9543 0.8933 35 1 1.7211 -0.2703 -1.9980 36 1 1.6365 -0.2369 2.1385 37 1 3.1289 -0.6783 1.2745 38 1 2.4503 -1.5346 3.7175 39 1 3.5207 -2.9603 3.5499 40 1 3.4039 -4.4572 5.2806 41 1 2.0300 -4.5170 6.4106 42 1 2.9246 -1.8437 6.2375 43 1 4.6125 0.0651 8.3904 44 1 0.6495 -4.6535 1.7494 45 1 2.3298 -5.0242 2.2424 46 1 -0.8221 -4.3785 5.0273 47 1 -0.8396 -3.4800 3.4898 48 1 -0.9033 -5.5906 2.2254 49 1 -2.2442 -5.5522 3.3958 50 1 1.0134 -6.9971 2.7048 51 1 1.0174 -7.9453 4.2114 52 1 2.5372 -5.9583 4.3345 53 1 1.2296 -5.8834 5.5406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186393842.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:07 Heat of formation + Delta-G solvation = -143.931699 kcal Electronic energy + Delta-G solvation = -32112.921379 eV Core-core repulsion = 27983.717773 eV Total energy + Delta-G solvation = -4129.203605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.03263 -40.52212 -38.80113 -38.07482 -36.33151 -34.61754 -33.64966 -33.33867 -32.13825 -30.77547 -29.92843 -28.19195 -27.38914 -27.02261 -25.54904 -24.95840 -23.67623 -22.10361 -21.56325 -20.15382 -19.69268 -18.95530 -18.21762 -17.48522 -17.16503 -16.99729 -16.93027 -16.59054 -16.45799 -15.94306 -15.87378 -15.57915 -15.24507 -15.17577 -14.98495 -14.74589 -14.37505 -14.15633 -13.87331 -13.62861 -13.41597 -13.25198 -13.19039 -12.96076 -12.94208 -12.85281 -12.76305 -12.65084 -12.52775 -12.39239 -12.31177 -12.19410 -12.10486 -11.88214 -11.76113 -11.65341 -11.23789 -11.11903 -11.00651 -10.81992 -10.58620 -10.36450 -9.72150 -8.93661 -7.91608 -5.18853 1.50784 1.50937 1.59117 1.65790 1.92999 2.58706 2.98139 3.22492 3.35114 3.41281 3.46411 3.56906 3.68962 3.76453 3.99817 4.04615 4.07228 4.10568 4.17729 4.18840 4.21673 4.29781 4.40371 4.47223 4.52197 4.58425 4.62237 4.63952 4.69461 4.71395 4.73912 4.80596 4.84213 4.88233 4.90983 4.92948 4.99196 5.05529 5.12158 5.14253 5.17069 5.19689 5.25062 5.40940 5.42669 5.44839 5.55240 6.28099 6.31181 6.54088 6.96492 7.19826 7.38704 8.13759 8.37177 9.31693 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007915 B = 0.003970 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3536.634261 B = 7051.254165 C = 9997.168878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.141 3.859 3 C -0.173 4.173 4 O -0.569 6.569 5 C -0.130 4.130 6 C 0.533 3.467 7 O -0.556 6.556 8 N -0.624 5.624 9 C 0.116 3.884 10 C -0.088 4.088 11 H 0.076 0.924 12 C 0.166 3.834 13 N -0.743 5.743 14 C -0.241 4.241 15 H 0.074 0.926 16 C -0.070 4.070 17 N -0.966 5.966 18 Si 0.965 3.035 19 H -0.288 1.288 20 H -0.298 1.298 21 H -0.272 1.272 22 C -0.055 4.055 23 C 0.114 3.886 24 C -0.134 4.134 25 C 0.061 3.939 26 O -0.398 6.398 27 C 0.059 3.941 28 C -0.142 4.142 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.385 0.615 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.053 0.947 49 H 0.106 0.894 50 H 0.057 0.943 51 H 0.108 0.892 52 H 0.085 0.915 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 -2.871 -15.700 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.100 3.900 3 C -0.230 4.230 4 O -0.376 6.376 5 C -0.170 4.170 6 C 0.324 3.676 7 O -0.434 6.434 8 N -0.358 5.358 9 C -0.007 4.007 10 C -0.107 4.107 11 H 0.095 0.905 12 C 0.040 3.960 13 N -0.386 5.386 14 C -0.373 4.373 15 H 0.092 0.908 16 C -0.262 4.262 17 N -0.617 5.617 18 Si 0.795 3.205 19 H -0.216 1.216 20 H -0.224 1.224 21 H -0.197 1.197 22 C -0.056 4.056 23 C -0.008 4.008 24 C -0.171 4.171 25 C -0.015 4.015 26 O -0.317 6.317 27 C -0.017 4.017 28 C -0.180 4.180 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.233 0.767 36 H 0.135 0.865 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.207 0.793 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.071 0.929 49 H 0.124 0.876 50 H 0.076 0.924 51 H 0.126 0.874 52 H 0.103 0.897 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.151 -3.660 -15.675 18.516 hybrid contribution 0.714 1.051 0.498 1.365 sum -8.437 -2.609 -15.177 17.559 Atomic orbital electron populations 1.22544 0.95327 1.02698 1.03081 1.20903 0.93128 0.91146 0.84788 1.22454 1.02034 0.94606 1.03949 1.86630 1.76897 1.57885 1.16189 1.21862 1.03752 0.91429 0.99925 1.20530 0.78201 0.88236 0.80649 1.90654 1.43587 1.76606 1.32538 1.49157 1.58819 1.11832 1.16025 1.22427 0.96109 1.00836 0.81340 1.22128 0.97322 0.96677 0.94599 0.90511 1.20932 0.93776 0.89949 0.91344 1.42561 1.54190 1.04647 1.37206 1.19576 1.17826 0.92753 1.07105 0.90778 1.25428 1.03014 0.95183 1.02605 1.69782 1.49593 0.97949 1.44376 0.85260 0.79011 0.76926 0.79299 1.21575 1.22437 1.19657 1.21032 0.95632 0.95138 0.93819 1.22499 1.00436 0.82075 0.95796 1.22083 0.93679 0.99261 1.02115 1.22696 0.99556 0.83377 0.95874 1.87891 1.23215 1.41024 1.79592 1.22764 0.80180 0.98804 0.99974 1.22268 1.01380 0.93265 1.01115 0.91283 0.90967 0.92810 0.92031 0.90447 0.90588 0.76654 0.86460 0.88147 0.89926 0.91208 0.95373 0.95500 0.79302 0.94093 0.90362 0.90693 0.91035 0.91107 0.92897 0.87629 0.92425 0.87385 0.89676 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 8.53 71.98 0.61 -2.91 16 2 C 0.14 2.89 0.98 -10.79 -0.01 2.88 16 3 C -0.17 -2.63 8.82 71.98 0.63 -2.00 16 4 O -0.57 -13.52 11.54 -129.22 -1.49 -15.01 16 5 C -0.13 -3.02 4.07 29.85 0.12 -2.90 16 6 C 0.53 15.32 7.40 87.66 0.65 15.97 16 7 O -0.56 -18.93 13.47 16.73 0.23 -18.71 16 8 N -0.62 -16.85 3.32 -807.75 -2.68 -19.53 16 9 C 0.12 3.24 6.22 86.57 0.54 3.78 16 10 C -0.09 -2.51 2.75 -10.02 -0.03 -2.54 16 11 H 0.08 2.34 7.70 -2.39 -0.02 2.32 16 12 C 0.17 5.91 4.39 86.38 0.38 6.29 16 13 N -0.74 -34.75 5.46 -343.45 -1.87 -36.62 16 14 C -0.24 -12.74 9.99 84.03 0.84 -11.90 16 15 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 16 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 17 N -0.97 -56.48 13.06 21.65 0.28 -56.20 16 18 Si 0.97 44.64 29.55 68.60 2.03 46.67 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C -0.05 -1.30 0.69 -51.80 -0.04 -1.34 16 23 C 0.11 2.82 5.13 86.43 0.44 3.26 16 24 C -0.13 -3.01 4.68 30.53 0.14 -2.86 16 25 C 0.06 1.26 6.64 72.05 0.48 1.74 16 26 O -0.40 -9.29 10.75 -148.98 -1.60 -10.89 16 27 C 0.06 1.17 6.65 72.05 0.48 1.65 16 28 C -0.14 -3.20 3.63 30.53 0.11 -3.08 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.39 5.98 -2.39 -0.01 1.37 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.38 5.96 9.05 -74.06 -0.67 5.29 16 36 H 0.12 2.36 7.67 -2.39 -0.02 2.34 16 37 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 38 H 0.08 2.29 7.13 -2.39 -0.02 2.27 16 39 H 0.07 2.11 7.78 -2.38 -0.02 2.10 16 40 H 0.03 1.00 6.94 -2.39 -0.02 0.98 16 41 H 0.03 0.99 6.51 -2.39 -0.02 0.97 16 42 H 0.37 18.52 7.56 -92.71 -0.70 17.81 16 43 H 0.25 14.29 8.31 -92.70 -0.77 13.51 16 44 H 0.08 1.99 5.94 -2.39 -0.01 1.98 16 45 H 0.07 1.77 7.79 -2.38 -0.02 1.75 16 46 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.05 1.07 6.53 -2.38 -0.02 1.05 16 49 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.06 1.04 7.55 -2.39 -0.02 1.02 16 51 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.08 1.86 6.93 -2.39 -0.02 1.84 16 53 H 0.07 1.87 6.55 -2.39 -0.02 1.86 16 Total: -1.00 -68.17 399.69 0.25 -67.92 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -0.46 Total: 39.70 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 5.82 Total: 2.67 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -4.27 Total: -112.35 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -2.87 Total: -44.61 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -68.17 0.25 -67.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186393842.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.014 kcal (2) G-P(sol) polarization free energy of solvation -68.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds