Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47014 * 2 1 4 4 C 1.53001 * 109.47307 * 120.00058 * 2 1 3 5 5 H 1.08999 * 110.54041 * 47.54318 * 4 2 1 6 6 C 1.55128 * 110.52577 * 284.76022 * 4 2 1 7 7 C 1.54999 * 102.09281 * 220.39937 * 6 4 2 8 8 O 1.44375 * 103.49002 * 37.10482 * 7 6 4 9 9 C 1.43742 * 106.97817 * 319.93777 * 8 7 6 10 10 H 1.09002 * 109.88231 * 266.94111 * 9 8 7 11 11 C 1.50703 * 109.88035 * 145.93871 * 9 8 7 12 12 O 1.21285 * 119.99764 * 350.02887 * 11 9 8 13 13 N 1.34773 * 119.99819 * 170.02967 * 11 9 8 14 14 C 1.47506 * 118.75996 * 354.49377 * 13 11 9 15 15 C 1.53561 * 111.03153 * 221.63243 * 14 13 11 16 16 C 1.51538 * 109.58285 * 39.97835 * 15 14 13 17 17 O 1.42073 * 108.76193 * 268.59248 * 16 15 14 18 18 C 1.38009 * 119.44268 * 87.23995 * 17 16 15 19 19 H 1.09009 * 109.46895 * 56.56044 * 18 17 16 20 20 C 1.53001 * 109.47014 * 176.55244 * 18 17 16 21 21 N 1.46504 * 109.47432 * 300.01165 * 20 18 17 22 22 C 1.36931 * 119.99924 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00436 * 0.02562 * 22 21 20 24 24 C 1.38818 * 120.00048 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00169 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99695 * 359.72529 * 24 22 21 27 27 H 1.48495 * 109.47200 * 89.99745 * 26 24 22 28 28 H 1.48500 * 109.47036 * 210.00291 * 26 24 22 29 29 H 1.48508 * 109.46985 * 329.99950 * 26 24 22 30 30 C 1.45125 * 118.75149 * 174.52090 * 13 11 9 31 31 H 1.09006 * 109.47548 * 66.21022 * 1 2 3 32 32 H 1.09006 * 109.47034 * 186.20776 * 1 2 3 33 33 H 1.09001 * 109.47492 * 306.20554 * 1 2 3 34 34 H 1.09004 * 109.47123 * 240.00500 * 2 1 3 35 35 H 1.09002 * 109.47502 * 167.31942 * 3 2 1 36 36 H 1.09001 * 109.47415 * 287.31707 * 3 2 1 37 37 H 1.08994 * 109.47239 * 47.31667 * 3 2 1 38 38 H 1.09001 * 110.83926 * 102.22830 * 6 4 2 39 39 H 1.09008 * 111.00919 * 338.64038 * 6 4 2 40 40 H 1.08997 * 110.61332 * 278.60130 * 7 6 4 41 41 H 1.09000 * 110.61898 * 155.60434 * 7 6 4 42 42 H 1.09000 * 109.16664 * 342.03402 * 14 13 11 43 43 H 1.09003 * 109.16237 * 101.29001 * 14 13 11 44 44 H 1.09004 * 109.45767 * 160.01070 * 15 14 13 45 45 H 1.09001 * 109.45518 * 279.96854 * 15 14 13 46 46 H 1.09003 * 109.58437 * 28.37970 * 16 15 14 47 47 H 1.08998 * 109.59129 * 148.66655 * 16 15 14 48 48 H 1.09003 * 109.47144 * 180.02562 * 20 18 17 49 49 H 1.09001 * 109.47360 * 60.01495 * 20 18 17 50 50 H 0.96998 * 119.99414 * 0.02562 * 21 20 18 51 51 H 0.97000 * 119.99826 * 179.97438 * 25 24 22 52 52 H 1.09003 * 109.46345 * 330.69132 * 30 13 11 53 53 H 1.09005 * 109.45913 * 210.73458 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5179 -1.6685 1.3839 6 6 1.8723 0.1773 2.5026 7 6 3.1903 -0.0909 3.2730 8 8 4.1749 -0.2123 2.2240 9 6 3.5607 -0.9522 1.1556 10 1 3.7819 -2.0139 1.2650 11 6 4.0735 -0.4564 -0.1720 12 8 4.7422 0.5541 -0.2247 13 7 3.7891 -1.1359 -1.3006 14 6 3.0799 -2.4248 -1.1933 15 6 3.6744 -3.4628 -2.1563 16 6 5.1843 -3.3349 -2.1720 17 8 5.5558 -2.4348 -3.2066 18 6 5.6079 -1.0814 -2.9420 19 1 6.2865 -0.8999 -2.1084 20 6 6.1122 -0.3386 -4.1809 21 7 7.4515 -0.8204 -4.5279 22 6 8.1084 -0.2974 -5.6095 23 1 7.6394 0.4706 -6.2067 24 6 9.3772 -0.7544 -5.9386 25 7 10.0084 -0.2520 -6.9786 26 14 10.1916 -2.0773 -4.9012 27 1 9.8405 -3.4155 -5.4407 28 1 11.6654 -1.8991 -4.9396 29 1 9.7163 -1.9688 -3.4984 30 6 4.1928 -0.5721 -2.5754 31 1 -0.3634 0.4146 -0.9404 32 1 -0.3633 -1.0217 0.1111 33 1 -0.3634 0.6070 0.8292 34 1 1.8933 -0.5138 -0.8901 35 1 3.1063 1.4509 0.2256 36 1 1.8726 1.8870 -0.9811 37 1 1.5042 2.0172 0.7554 38 1 1.0083 -0.1337 3.0899 39 1 1.7923 1.2277 2.2226 40 1 3.1201 -1.0175 3.8427 41 1 3.4291 0.7467 3.9284 42 1 3.1635 -2.7954 -0.1716 43 1 2.0275 -2.2753 -1.4347 44 1 3.3984 -4.4643 -1.8261 45 1 3.2855 -3.2914 -3.1600 46 1 5.5284 -2.9503 -1.2119 47 1 5.6319 -4.3115 -2.3561 48 1 6.1537 0.7304 -3.9718 49 1 5.4336 -0.5198 -5.0145 50 1 7.8725 -1.5105 -3.9917 51 1 10.8952 -0.5711 -7.2083 52 1 4.2054 0.5155 -2.5038 53 1 3.4860 -0.8768 -3.3473 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200520121.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -108.971016 kcal Electronic energy + Delta-G solvation = -32893.230135 eV Core-core repulsion = 28765.542538 eV Total energy + Delta-G solvation = -4127.687597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.52835 -40.66407 -39.11464 -37.24863 -36.72734 -36.15512 -34.37934 -33.02083 -31.58731 -31.45291 -29.98553 -28.13065 -27.79451 -26.73343 -24.92786 -23.81172 -23.49699 -22.81613 -22.37579 -20.90267 -19.83211 -19.63967 -18.54363 -17.95463 -17.75969 -17.60006 -16.92857 -16.84044 -16.39597 -16.35400 -15.79047 -15.44031 -15.38315 -15.13392 -14.96180 -14.83925 -14.48236 -14.32782 -14.04239 -13.80069 -13.75052 -13.53809 -13.33389 -13.22398 -12.94210 -12.86602 -12.70625 -12.65812 -12.52712 -12.35114 -12.15567 -12.12298 -12.00364 -11.85002 -11.67249 -11.52296 -11.42749 -11.20197 -11.06343 -11.03594 -10.60216 -10.39545 -9.62567 -9.34193 -8.05974 -5.38890 1.33834 1.37303 1.44750 1.46708 1.74115 2.45461 2.66183 2.92147 3.25435 3.26245 3.43401 3.45972 3.62436 3.82230 3.90421 3.93500 4.01887 4.05813 4.08162 4.20085 4.22437 4.26333 4.31499 4.34744 4.42141 4.44971 4.47479 4.66416 4.70798 4.73323 4.74965 4.80045 4.83176 4.83924 4.84835 4.88268 5.04002 5.07773 5.10751 5.11752 5.18654 5.21645 5.29549 5.43760 5.46539 5.51473 5.70258 5.80982 6.17688 6.23676 6.68747 7.03394 7.10443 7.79332 7.99752 9.15608 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.003026 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.367218 B = 9251.657003 C = 9352.172367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C -0.173 4.173 4 C -0.096 4.096 5 H 0.131 0.869 6 C -0.151 4.151 7 C 0.037 3.963 8 O -0.389 6.389 9 C 0.059 3.941 10 H 0.114 0.886 11 C 0.512 3.488 12 O -0.564 6.564 13 N -0.603 5.603 14 C 0.094 3.906 15 C -0.157 4.157 16 C 0.060 3.940 17 O -0.396 6.396 18 C 0.102 3.898 19 H 0.023 0.977 20 C 0.166 3.834 21 N -0.754 5.754 22 C -0.236 4.236 23 H 0.060 0.940 24 C -0.061 4.061 25 N -0.982 5.982 26 Si 0.957 3.043 27 H -0.273 1.273 28 H -0.291 1.291 29 H -0.265 1.265 30 C 0.098 3.902 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.123 0.877 45 H 0.078 0.922 46 H 0.040 0.960 47 H 0.100 0.900 48 H 0.036 0.964 49 H 0.040 0.960 50 H 0.365 0.635 51 H 0.259 0.741 52 H 0.076 0.924 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.962 -9.108 24.179 38.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.128 4.128 3 C -0.230 4.230 4 C -0.115 4.115 5 H 0.149 0.851 6 C -0.188 4.188 7 C -0.039 4.039 8 O -0.308 6.308 9 C -0.002 4.002 10 H 0.132 0.868 11 C 0.301 3.699 12 O -0.443 6.443 13 N -0.336 5.336 14 C -0.026 4.026 15 C -0.195 4.195 16 C -0.015 4.015 17 O -0.315 6.315 18 C 0.041 3.959 19 H 0.040 0.960 20 C 0.039 3.961 21 N -0.399 5.399 22 C -0.367 4.367 23 H 0.078 0.922 24 C -0.253 4.253 25 N -0.632 5.632 26 Si 0.785 3.215 27 H -0.199 1.199 28 H -0.217 1.217 29 H -0.191 1.191 30 C -0.027 4.027 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.142 0.858 45 H 0.097 0.903 46 H 0.058 0.942 47 H 0.118 0.882 48 H 0.054 0.946 49 H 0.058 0.942 50 H 0.198 0.802 51 H 0.068 0.932 52 H 0.094 0.906 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -27.369 -8.425 23.812 37.243 hybrid contribution 1.199 0.024 0.211 1.218 sum -26.170 -8.400 24.023 36.504 Atomic orbital electron populations 1.21778 0.92844 1.02981 1.01802 1.21549 0.97684 0.95476 0.98086 1.22358 1.02528 0.97353 1.00804 1.22723 0.90977 1.01741 0.96055 0.85107 1.23436 0.98829 1.01087 0.95498 1.23868 0.87043 1.02818 0.90168 1.88995 1.38079 1.76325 1.27398 1.23006 0.94870 0.97063 0.85222 0.86830 1.21012 0.78732 0.83422 0.86701 1.90699 1.39316 1.27272 1.86980 1.48026 1.57958 1.22664 1.04984 1.22499 0.97083 0.80859 1.02179 1.22448 0.94580 1.01146 1.01276 1.22455 0.96209 0.93003 0.89870 1.86322 1.89130 1.15790 1.40307 1.21901 0.95794 0.82244 0.95938 0.95955 1.20736 0.85670 0.95353 0.94349 1.42565 1.16736 1.47230 1.33361 1.19075 0.98207 1.16131 1.03288 0.92205 1.25465 0.97831 1.02592 0.99417 1.69874 1.15040 1.47814 1.30498 0.85375 0.77317 0.79718 0.79131 1.19858 1.21701 1.19080 1.22061 0.95428 0.99371 0.85835 0.93210 0.90477 0.92386 0.89322 0.92438 0.94326 0.92003 0.86960 0.90765 0.89585 0.88716 0.87523 0.88043 0.85846 0.90323 0.94162 0.88227 0.94646 0.94202 0.80171 0.93178 0.90579 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.04 71.98 0.65 -0.51 16 2 C -0.11 -1.43 2.14 -10.80 -0.02 -1.45 16 3 C -0.17 -3.55 7.71 71.98 0.55 -3.00 16 4 C -0.10 -0.98 2.30 -9.69 -0.02 -1.00 16 5 H 0.13 0.37 8.08 -2.39 -0.02 0.36 16 6 C -0.15 -1.51 6.17 32.01 0.20 -1.31 16 7 C 0.04 0.49 7.72 72.67 0.56 1.05 16 8 O -0.39 -9.21 10.75 -130.45 -1.40 -10.61 16 9 C 0.06 1.04 2.73 30.22 0.08 1.13 16 10 H 0.11 1.38 6.57 -2.39 -0.02 1.36 16 11 C 0.51 13.00 4.36 87.66 0.38 13.38 16 12 O -0.56 -20.75 13.95 15.49 0.22 -20.53 16 13 N -0.60 -12.42 0.97 -817.97 -0.80 -13.21 16 14 C 0.09 1.00 4.75 86.38 0.41 1.41 16 15 C -0.16 -1.95 5.79 30.30 0.18 -1.77 16 16 C 0.06 1.32 6.37 71.50 0.46 1.77 16 17 O -0.40 -12.92 9.18 -117.78 -1.08 -14.00 16 18 C 0.10 3.54 2.73 31.21 0.09 3.62 16 19 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 20 C 0.17 7.11 5.95 86.38 0.51 7.63 16 21 N -0.75 -39.57 5.29 -343.44 -1.82 -41.39 16 22 C -0.24 -14.55 10.47 84.04 0.88 -13.67 16 23 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 24 C -0.06 -3.85 5.50 84.86 0.47 -3.39 16 25 N -0.98 -65.67 13.97 21.65 0.30 -65.36 16 26 Si 0.96 49.10 27.73 68.60 1.90 51.00 16 27 H -0.27 -13.43 7.11 99.48 0.71 -12.73 16 28 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 29 H -0.27 -12.91 6.53 99.48 0.65 -12.26 16 30 C 0.10 2.59 4.82 87.25 0.42 3.02 16 31 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.08 0.33 8.10 -2.38 -0.02 0.31 16 33 H 0.06 0.47 7.90 -2.39 -0.02 0.45 16 34 H 0.09 1.25 3.62 -2.38 -0.01 1.24 16 35 H 0.06 1.62 4.29 -2.39 -0.01 1.61 16 36 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 1.10 6.36 -2.39 -0.02 1.09 16 38 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.07 1.01 5.30 -2.38 -0.01 0.99 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.11 0.62 5.54 -2.39 -0.01 0.61 16 43 H 0.10 0.61 7.05 -2.39 -0.02 0.59 16 44 H 0.12 0.69 8.14 -2.38 -0.02 0.68 16 45 H 0.08 1.16 8.01 -2.39 -0.02 1.14 16 46 H 0.04 0.93 7.40 -2.39 -0.02 0.91 16 47 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.37 18.85 5.40 -92.71 -0.50 18.35 16 51 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 52 H 0.08 2.31 7.36 -2.39 -0.02 2.30 16 53 H 0.11 2.38 8.11 -2.38 -0.02 2.36 16 Total: -1.00 -86.15 388.01 3.46 -82.68 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.35 Total: 24.53 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 5.79 Total: 6.90 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -2.31 Total: -119.97 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -2.27 Total: -45.15 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 1.90 Total: 51.00 kcal Total: -86.15 3.46 -82.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200520121.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.289 kcal (2) G-P(sol) polarization free energy of solvation -86.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds