Wall clock time and date at job start Sat Apr 11 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00135 * 2 1 4 4 C 1.52998 * 109.47018 * 119.99967 * 3 2 1 5 5 C 1.53001 * 109.47472 * 239.99962 * 3 2 1 6 6 C 1.53001 * 109.46909 * 300.00308 * 5 3 2 7 7 O 1.42903 * 109.46710 * 179.97438 * 6 5 3 8 8 C 1.42899 * 113.99733 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47122 * 0.02562 * 3 2 1 10 10 O 1.21284 * 120.00460 * 232.80790 * 9 3 2 11 11 N 1.34777 * 120.00048 * 52.81071 * 9 3 2 12 12 C 1.47502 * 118.75855 * 3.69737 * 11 9 3 13 13 C 1.53947 * 110.82361 * 138.25183 * 12 11 9 14 14 C 1.51541 * 109.72528 * 320.31349 * 13 12 11 15 15 O 1.42146 * 108.76770 * 91.29277 * 14 13 12 16 16 C 1.38014 * 119.43738 * 272.78148 * 15 14 13 17 17 H 1.09005 * 109.46663 * 303.42523 * 16 15 14 18 18 C 1.53001 * 109.47227 * 183.43453 * 16 15 14 19 19 N 1.46493 * 109.47386 * 64.98332 * 18 16 15 20 20 C 1.36938 * 120.00026 * 180.02562 * 19 18 16 21 21 H 1.07996 * 119.99815 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99692 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99490 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00457 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47025 * 90.00107 * 24 22 20 26 26 H 1.48503 * 109.47111 * 210.00523 * 24 22 20 27 27 H 1.48506 * 109.46852 * 330.00451 * 24 22 20 28 28 C 1.45129 * 118.75837 * 183.96808 * 11 9 3 29 29 H 1.07995 * 119.99826 * 0.02562 * 1 2 3 30 30 H 1.07992 * 119.99937 * 179.71896 * 1 2 3 31 31 H 1.07997 * 119.99766 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47068 * 37.26912 * 4 3 2 33 33 H 1.09004 * 109.47314 * 157.26710 * 4 3 2 34 34 H 1.09003 * 109.47460 * 277.26867 * 4 3 2 35 35 H 1.09006 * 109.47197 * 60.00116 * 5 3 2 36 36 H 1.08998 * 109.47448 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.46853 * 299.99366 * 6 5 3 38 38 H 1.09000 * 109.47593 * 60.00017 * 6 5 3 39 39 H 1.09008 * 109.47175 * 60.00476 * 8 7 6 40 40 H 1.08999 * 109.47237 * 179.97438 * 8 7 6 41 41 H 1.08997 * 109.47363 * 299.99817 * 8 7 6 42 42 H 1.08999 * 109.17123 * 258.77415 * 12 11 9 43 43 H 1.09004 * 109.16245 * 17.97493 * 12 11 9 44 44 H 1.08994 * 109.46341 * 200.17864 * 13 12 11 45 45 H 1.09002 * 109.27924 * 80.32099 * 13 12 11 46 46 H 1.08993 * 109.58642 * 331.50154 * 14 13 12 47 47 H 1.08999 * 109.70196 * 211.14325 * 14 13 12 48 48 H 1.08996 * 109.47002 * 184.98774 * 18 16 15 49 49 H 1.09007 * 109.46698 * 304.98475 * 18 16 15 50 50 H 0.97005 * 119.99780 * 0.02562 * 19 18 16 51 51 H 0.97002 * 119.99560 * 179.97438 * 23 22 20 52 52 H 1.09003 * 109.46038 * 29.30918 * 28 11 9 53 53 H 1.08999 * 109.46394 * 149.27323 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 6 2.9432 1.3862 -1.2492 6 6 3.9374 0.2232 -1.2492 7 8 4.7586 0.2986 -2.4163 8 6 5.7275 -0.7472 -2.5138 9 6 1.0843 2.4505 0.0006 10 8 1.1725 3.3242 -0.8359 11 7 0.1105 2.5041 0.9309 12 6 0.0782 1.4725 1.9846 13 6 -0.2471 2.0981 3.3531 14 6 0.4712 3.4251 3.4926 15 8 -0.3833 4.4593 3.0225 16 6 -0.3801 4.7846 1.6813 17 1 0.6318 5.0488 1.3739 18 6 -1.3123 5.9742 1.4427 19 7 -0.7828 7.1549 2.1295 20 6 -1.4536 8.3466 2.0582 21 1 -2.3727 8.4161 1.4954 22 6 -0.9516 9.4655 2.7086 23 7 -1.5966 10.6108 2.6405 24 14 0.6385 9.3455 3.6815 25 1 1.7873 9.6539 2.7924 26 1 0.6065 10.3170 4.8041 27 1 0.7858 7.9699 4.2214 28 6 -0.8702 3.5711 0.8544 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9352 -0.0046 31 1 1.8500 -0.9353 -0.0004 32 1 3.3512 0.3999 1.4708 33 1 3.7599 2.0862 1.0738 34 1 2.3450 1.7298 2.0932 35 1 2.3166 1.3285 -2.1393 36 1 3.4879 2.3303 -1.2494 37 1 4.5640 0.2810 -0.3593 38 1 3.3924 -0.7208 -1.2493 39 1 5.2199 -1.7115 -2.5395 40 1 6.3098 -0.6192 -3.4263 41 1 6.3915 -0.7090 -1.6503 42 1 -0.6812 0.7309 1.7365 43 1 1.0511 0.9835 2.0367 44 1 0.0770 1.4247 4.1466 45 1 -1.3226 2.2578 3.4293 46 1 1.3860 3.4094 2.9003 47 1 0.7168 3.6018 4.5397 48 1 -1.3787 6.1750 0.3735 49 1 -2.3040 5.7421 1.8312 50 1 0.0429 7.0925 2.6347 51 1 -1.2460 11.3926 3.0952 52 1 -1.0018 3.8696 -0.1857 53 1 -1.8213 3.2196 1.2542 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201080021.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:24 Heat of formation + Delta-G solvation = -75.011792 kcal Electronic energy + Delta-G solvation = -32091.131990 eV Core-core repulsion = 27964.916976 eV Total energy + Delta-G solvation = -4126.215014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.57314 -40.19969 -38.92890 -37.74181 -36.82193 -36.34906 -34.34964 -33.02541 -32.72006 -30.72182 -30.10318 -27.92250 -27.28824 -26.93667 -25.65138 -24.25410 -23.20129 -22.69260 -22.30268 -21.58806 -19.84135 -19.34808 -18.22420 -17.98968 -17.70838 -17.35965 -17.00524 -16.71288 -16.56912 -16.39792 -16.11911 -15.61647 -15.39983 -15.18256 -14.92644 -14.81043 -14.65595 -14.41980 -14.30250 -14.01160 -13.85768 -13.48076 -13.41455 -13.36568 -12.96457 -12.88920 -12.84244 -12.62745 -12.61109 -12.42989 -12.28242 -12.09009 -11.96202 -11.86752 -11.75274 -11.59568 -11.52208 -11.06037 -10.73344 -10.63254 -10.56305 -10.03796 -9.67697 -9.34791 -8.05972 -5.39248 1.26283 1.33709 1.36952 1.45203 1.46926 1.80193 2.45398 2.65449 2.82302 3.23303 3.25643 3.43697 3.64550 3.80143 3.85044 3.93322 3.96966 4.00969 4.09024 4.16950 4.22614 4.24868 4.28781 4.37200 4.41517 4.46661 4.52605 4.54976 4.56439 4.64560 4.67402 4.71607 4.78488 4.82667 4.83909 4.87578 4.95858 5.02373 5.03654 5.08938 5.13310 5.18162 5.24578 5.49133 5.61323 5.70099 5.76097 6.17003 6.19272 6.27305 6.67546 7.02276 7.03481 7.78511 7.98767 9.15416 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.002865 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.229916 B = 9771.155326 C =10510.208033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C -0.038 4.038 4 C -0.155 4.155 5 C -0.088 4.088 6 C 0.066 3.934 7 O -0.426 6.426 8 C 0.026 3.974 9 C 0.510 3.490 10 O -0.578 6.578 11 N -0.601 5.601 12 C 0.078 3.922 13 C -0.161 4.161 14 C 0.060 3.940 15 O -0.396 6.396 16 C 0.103 3.897 17 H 0.026 0.974 18 C 0.165 3.835 19 N -0.754 5.754 20 C -0.236 4.236 21 H 0.060 0.940 22 C -0.063 4.063 23 N -0.981 5.981 24 Si 0.955 3.045 25 H -0.281 1.281 26 H -0.288 1.288 27 H -0.256 1.256 28 C 0.091 3.909 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.153 0.847 32 H 0.109 0.891 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.100 0.900 48 H 0.039 0.961 49 H 0.038 0.962 50 H 0.365 0.635 51 H 0.259 0.741 52 H 0.077 0.923 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.908 -36.369 -1.044 38.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.179 4.179 3 C -0.041 4.041 4 C -0.212 4.212 5 C -0.126 4.126 6 C -0.009 4.009 7 O -0.346 6.346 8 C -0.070 4.070 9 C 0.300 3.700 10 O -0.457 6.457 11 N -0.333 5.333 12 C -0.041 4.041 13 C -0.199 4.199 14 C -0.015 4.015 15 O -0.315 6.315 16 C 0.042 3.958 17 H 0.044 0.956 18 C 0.039 3.961 19 N -0.399 5.399 20 C -0.366 4.366 21 H 0.078 0.922 22 C -0.254 4.254 23 N -0.632 5.632 24 Si 0.782 3.218 25 H -0.207 1.207 26 H -0.215 1.215 27 H -0.181 1.181 28 C -0.034 4.034 29 H 0.114 0.886 30 H 0.147 0.853 31 H 0.171 0.829 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.118 0.882 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.198 0.802 51 H 0.068 0.932 52 H 0.096 0.904 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.622 -35.565 -1.547 37.448 hybrid contribution 0.749 0.873 0.161 1.162 sum 12.371 -34.692 -1.386 36.857 Atomic orbital electron populations 1.24677 0.96694 1.03839 0.97955 1.22772 0.95747 0.96116 1.03240 1.19802 0.94326 0.91925 0.98055 1.22284 0.99108 1.05227 0.94580 1.21210 0.96470 0.98781 0.96173 1.22640 0.92269 0.98035 0.88005 1.87857 1.50323 1.51730 1.44686 1.22921 0.91260 0.89973 1.02851 1.21240 0.81593 0.86997 0.80179 1.90732 1.73057 1.41660 1.40253 1.48103 1.27963 1.28426 1.28770 1.23408 1.05992 0.89571 0.85165 1.22583 1.02463 0.96907 0.97933 1.22493 0.92173 0.86994 0.99856 1.86350 1.64664 1.56447 1.24077 1.21886 0.97473 0.93746 0.82663 0.95626 1.20730 0.95760 0.84288 0.95362 1.42583 1.28128 1.06987 1.62204 1.19059 1.04803 0.87046 1.25727 0.92236 1.25484 1.02575 0.95097 1.02275 1.69879 1.42364 1.01143 1.49788 0.85400 0.79901 0.77975 0.78517 1.20717 1.21471 1.18086 1.22136 0.92775 0.87188 1.01288 0.88618 0.85279 0.82928 0.87274 0.92313 0.90528 0.92792 0.92873 0.91207 0.90824 0.92627 0.89221 0.92864 0.87894 0.86026 0.86036 0.90609 0.93732 0.88243 0.94356 0.94374 0.80221 0.93208 0.90444 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 10.47 67.78 0.71 -1.37 16 2 C -0.16 -1.60 6.79 25.64 0.17 -1.43 16 3 C -0.04 -0.62 0.51 -53.68 -0.03 -0.65 16 4 C -0.16 -1.77 6.97 71.98 0.50 -1.27 16 5 C -0.09 -1.78 3.84 30.59 0.12 -1.67 16 6 C 0.07 0.92 5.41 71.98 0.39 1.31 16 7 O -0.43 -8.02 10.70 -148.98 -1.59 -9.62 16 8 C 0.03 0.27 11.01 113.37 1.25 1.52 16 9 C 0.51 12.90 5.49 87.66 0.48 13.38 16 10 O -0.58 -20.91 15.45 -3.04 -0.05 -20.96 16 11 N -0.60 -12.82 0.93 -817.23 -0.76 -13.58 16 12 C 0.08 0.97 3.52 86.51 0.30 1.27 16 13 C -0.16 -2.16 5.79 30.44 0.18 -1.99 16 14 C 0.06 1.31 6.37 71.50 0.46 1.77 16 15 O -0.40 -12.85 9.38 -117.86 -1.11 -13.95 16 16 C 0.10 3.54 2.68 31.21 0.08 3.63 16 17 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 18 C 0.17 7.04 5.92 86.38 0.51 7.56 16 19 N -0.75 -39.24 5.34 -343.46 -1.83 -41.07 16 20 C -0.24 -14.44 10.47 84.03 0.88 -13.56 16 21 H 0.06 3.93 8.06 -2.91 -0.02 3.90 16 22 C -0.06 -3.92 5.50 84.86 0.47 -3.45 16 23 N -0.98 -65.46 13.97 21.65 0.30 -65.16 16 24 Si 0.95 48.62 27.74 68.60 1.90 50.52 16 25 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 26 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 27 H -0.26 -12.11 6.52 99.48 0.65 -11.46 16 28 C 0.09 2.45 4.83 87.25 0.42 2.87 16 29 H 0.10 1.51 4.38 -2.91 -0.01 1.50 16 30 H 0.13 0.77 8.06 -2.91 -0.02 0.75 16 31 H 0.15 0.62 7.00 -2.91 -0.02 0.60 16 32 H 0.11 0.48 7.54 -2.39 -0.02 0.47 16 33 H 0.06 0.84 7.93 -2.38 -0.02 0.82 16 34 H 0.08 0.86 4.33 -2.39 -0.01 0.85 16 35 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.05 1.37 8.00 -2.39 -0.02 1.35 16 37 H 0.07 0.70 6.99 -2.39 -0.02 0.69 16 38 H 0.07 0.67 6.62 -2.39 -0.02 0.66 16 39 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.10 0.93 5.64 -2.39 -0.01 0.91 16 43 H 0.12 1.05 3.19 -2.38 -0.01 1.04 16 44 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 1.20 8.01 -2.39 -0.02 1.18 16 46 H 0.04 0.98 6.32 -2.39 -0.02 0.97 16 47 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 50 H 0.36 18.59 5.52 -92.70 -0.51 18.08 16 51 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 52 H 0.08 2.37 7.33 -2.39 -0.02 2.35 16 53 H 0.11 2.42 8.11 -2.39 -0.02 2.40 16 Total: -1.00 -84.58 394.42 4.09 -80.49 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.33 Total: 25.40 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 6.89 Total: 7.93 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -2.29 Total: -119.81 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -2.75 Total: -44.53 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 1.90 Total: 50.52 kcal Total: -84.58 4.09 -80.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201080021.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.478 kcal (2) G-P(sol) polarization free energy of solvation -84.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds