Wall clock time and date at job start Sat Apr 11 2020 06:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 C 1.53003 * 109.46936 * 119.99738 * 2 1 3 5 5 H 1.08999 * 109.49270 * 300.02777 * 4 2 1 6 6 O 1.42898 * 109.47959 * 60.05943 * 4 2 1 7 7 C 1.42906 * 114.09809 * 181.13780 * 6 4 2 8 8 C 1.53088 * 109.41487 * 298.84424 * 7 6 4 9 9 C 1.53173 * 109.16617 * 57.60519 * 8 7 6 10 10 C 1.53093 * 109.47991 * 180.02562 * 4 2 1 11 11 H 1.09003 * 109.52554 * 62.43587 * 10 4 2 12 12 C 1.53011 * 109.52137 * 302.31276 * 10 4 2 13 13 N 1.46498 * 109.47025 * 174.99838 * 12 10 4 14 14 C 1.34775 * 119.99689 * 179.97438 * 13 12 10 15 15 O 1.21343 * 120.00459 * 0.02562 * 14 13 12 16 16 C 1.49453 * 119.99799 * 180.02562 * 14 13 12 17 17 O 1.21353 * 120.00208 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99937 * 179.72511 * 16 14 13 19 19 C 1.46504 * 119.99858 * 180.27545 * 18 16 14 20 20 C 1.53004 * 109.46932 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.46992 * 179.97438 * 20 19 18 22 22 C 1.50701 * 109.46983 * 180.02562 * 21 20 19 23 23 H 1.07998 * 120.00145 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00161 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99703 * 0.02562 * 24 22 21 26 26 Si 1.86789 * 120.00258 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47213 * 90.00051 * 26 24 22 28 28 H 1.48501 * 109.47499 * 210.00173 * 26 24 22 29 29 H 1.48502 * 109.47351 * 330.00064 * 26 24 22 30 30 H 1.09000 * 109.47184 * 300.00420 * 1 2 3 31 31 H 1.08997 * 109.46883 * 60.00358 * 1 2 3 32 32 H 1.08998 * 109.47064 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47184 * 239.99580 * 2 1 3 34 34 H 1.09002 * 109.47484 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.47206 * 299.99660 * 3 2 1 36 36 H 1.09000 * 109.47408 * 59.99717 * 3 2 1 37 37 H 1.09008 * 109.47737 * 58.82354 * 7 6 4 38 38 H 1.08994 * 109.48287 * 178.84285 * 7 6 4 39 39 H 1.09003 * 109.52209 * 177.51054 * 8 7 6 40 40 H 1.08998 * 109.52321 * 297.63173 * 8 7 6 41 41 H 1.09000 * 109.54307 * 183.15265 * 9 8 7 42 42 H 1.09003 * 109.54334 * 62.88844 * 9 8 7 43 43 H 1.09004 * 109.46654 * 54.99796 * 12 10 4 44 44 H 1.08994 * 109.46991 * 295.00243 * 12 10 4 45 45 H 0.97000 * 120.00381 * 0.02562 * 13 12 10 46 46 H 0.97000 * 120.00317 * 0.28450 * 18 16 14 47 47 H 1.08992 * 109.47142 * 300.00148 * 19 18 16 48 48 H 1.08997 * 109.46860 * 60.00391 * 19 18 16 49 49 H 1.08998 * 109.47524 * 300.00356 * 20 19 18 50 50 H 1.09005 * 109.46510 * 60.00408 * 20 19 18 51 51 H 1.08998 * 109.47307 * 300.00526 * 21 20 19 52 52 H 1.08997 * 109.46799 * 60.00313 * 21 20 19 53 53 H 0.97003 * 120.00173 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6764 -0.2079 2.1395 6 8 1.5649 -2.0689 1.2488 7 6 1.9642 -2.8288 2.3914 8 6 3.4920 -2.9135 2.4375 9 6 4.0735 -1.4968 2.4711 10 6 3.5709 -0.7208 1.2499 11 1 3.9349 0.3057 1.2938 12 6 4.0829 -1.3906 -0.0270 13 7 5.5429 -1.2838 -0.0828 14 6 6.2174 -1.8071 -1.1257 15 8 5.6155 -2.3664 -2.0186 16 6 7.7069 -1.6987 -1.1823 17 8 8.3091 -1.1398 -0.2892 18 7 8.3820 -2.2269 -2.2224 19 6 9.8426 -2.1259 -2.2749 20 6 10.3549 -2.8004 -3.5491 21 6 11.8802 -2.6943 -3.6043 22 6 12.3848 -3.3581 -4.8596 23 1 11.6873 -3.8100 -5.5493 24 6 13.7369 -3.3885 -5.1277 25 7 14.5863 -2.8386 -4.2876 26 14 14.3623 -4.2107 -6.6840 27 1 14.4194 -3.2128 -7.7823 28 1 15.7210 -4.7592 -6.4424 29 1 13.4438 -5.3137 -7.0646 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9564 0.8899 37 1 1.5996 -2.3429 3.2965 38 1 1.5461 -3.8331 2.3243 39 1 3.8000 -3.4549 3.3320 40 1 3.8547 -3.4362 1.5525 41 1 5.1620 -1.5488 2.4476 42 1 3.7509 -0.9918 3.3817 43 1 3.6488 -0.8958 -0.8959 44 1 3.7952 -2.4419 -0.0262 45 1 6.0242 -0.8371 0.6311 46 1 7.9008 -2.6738 -2.9363 47 1 10.1342 -1.0757 -2.2778 48 1 10.2725 -2.6201 -1.4038 49 1 10.0632 -3.8506 -3.5468 50 1 9.9249 -2.3057 -4.4201 51 1 12.1716 -1.6440 -3.6068 52 1 12.3105 -3.1886 -2.7334 53 1 15.5377 -2.8603 -4.4760 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261149944.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:38 Heat of formation + Delta-G solvation = -173.847136 kcal Electronic energy + Delta-G solvation = -29828.624080 eV Core-core repulsion = 25698.123244 eV Total energy + Delta-G solvation = -4130.500836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.89392 -41.04064 -39.58354 -37.26575 -36.64095 -36.26825 -35.23821 -34.10060 -33.04392 -31.47288 -29.10822 -28.09293 -27.76116 -26.02362 -25.60668 -24.26040 -23.75610 -22.37613 -21.40737 -21.20112 -20.43082 -19.29372 -18.50123 -18.04520 -17.47318 -17.40084 -17.08477 -16.68688 -16.45907 -16.37572 -16.08772 -15.84262 -15.49772 -15.06739 -14.94110 -14.80771 -14.50503 -14.27832 -13.99774 -13.91167 -13.78375 -13.57058 -13.48937 -13.21486 -12.95696 -12.91310 -12.76274 -12.57467 -12.53832 -12.40754 -12.22638 -12.03088 -11.89973 -11.72359 -11.70626 -11.56481 -11.33119 -11.24089 -10.96637 -10.76653 -10.54903 -10.41140 -10.31794 -10.20442 -8.19643 -6.30465 0.28796 1.26390 1.42082 1.42787 1.53940 2.08660 2.41408 2.59357 2.82562 3.14220 3.37992 3.54664 3.64576 3.77160 3.99170 4.07369 4.07877 4.11941 4.16796 4.17456 4.34101 4.39629 4.49288 4.51842 4.54411 4.63488 4.74664 4.81092 4.83501 4.85536 4.88436 4.90913 4.94643 5.02614 5.05167 5.09481 5.12628 5.14393 5.20995 5.22138 5.29522 5.31742 5.45273 5.48162 5.51287 5.70385 5.84162 5.86651 6.22644 6.30698 6.34603 6.68067 6.86261 6.88871 7.38798 8.92150 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023920 B = 0.001646 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.274333 B =17011.699279 C =17301.956692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 C -0.147 4.147 4 C 0.108 3.892 5 H 0.078 0.922 6 O -0.393 6.393 7 C 0.059 3.941 8 C -0.160 4.160 9 C -0.121 4.121 10 C -0.127 4.127 11 H 0.106 0.894 12 C 0.125 3.875 13 N -0.684 5.684 14 C 0.512 3.488 15 O -0.542 6.542 16 C 0.502 3.498 17 O -0.547 6.547 18 N -0.687 5.687 19 C 0.127 3.873 20 C -0.106 4.106 21 C 0.025 3.975 22 C -0.543 4.543 23 H 0.064 0.936 24 C -0.002 4.002 25 N -0.932 5.932 26 Si 0.965 3.035 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.263 1.263 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.418 0.582 46 H 0.419 0.581 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.067 0.933 51 H -0.003 1.003 52 H -0.003 1.003 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.375 6.220 16.364 35.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C -0.204 4.204 4 C 0.050 3.950 5 H 0.095 0.905 6 O -0.312 6.312 7 C -0.017 4.017 8 C -0.197 4.197 9 C -0.158 4.158 10 C -0.146 4.146 11 H 0.125 0.875 12 C 0.002 3.998 13 N -0.338 5.338 14 C 0.292 3.708 15 O -0.419 6.419 16 C 0.282 3.718 17 O -0.425 6.425 18 N -0.339 5.339 19 C 0.004 3.996 20 C -0.144 4.144 21 C -0.013 4.013 22 C -0.581 4.581 23 H 0.082 0.918 24 C -0.199 4.199 25 N -0.572 5.572 26 Si 0.790 3.210 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.187 1.187 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.256 0.744 46 H 0.256 0.744 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.015 0.985 52 H 0.015 0.985 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -31.325 6.171 16.247 35.823 hybrid contribution 1.119 -0.403 -0.566 1.317 sum -30.206 5.768 15.681 34.520 Atomic orbital electron populations 1.21723 0.94207 1.01809 1.02009 1.21214 0.96953 0.96327 0.96946 1.21874 1.01337 0.94289 1.02947 1.22121 0.90648 0.83214 0.99056 0.90451 1.87935 1.74719 1.23807 1.44773 1.22674 0.93775 0.96655 0.88635 1.22221 0.96853 0.97745 1.02915 1.21686 1.00952 0.95411 0.97750 1.22106 0.97258 1.01426 0.93771 0.87549 1.21639 0.77147 1.01925 0.99049 1.45766 1.08613 1.56306 1.23070 1.19964 0.87698 0.79911 0.83210 1.90764 1.69978 1.42970 1.38201 1.20322 0.88669 0.79898 0.82860 1.90745 1.70389 1.43368 1.38008 1.45895 1.08348 1.55915 1.23731 1.21482 0.77492 1.01246 0.99342 1.21645 0.96974 1.00331 0.95471 1.18936 0.90997 0.95597 0.95779 1.21677 0.92571 1.36581 1.07245 0.91819 1.25978 0.97451 0.96210 1.00297 1.70097 1.02806 1.46102 1.38230 0.85441 0.77560 0.78876 0.79122 1.19862 1.20916 1.18710 0.92095 0.92413 0.93008 0.91497 0.92202 0.91906 0.91300 0.91799 0.88476 0.89638 0.92631 0.91373 0.89565 0.90915 0.91387 0.74371 0.74393 0.91652 0.91688 0.91520 0.91476 0.98475 0.98477 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.05 71.98 0.65 -0.88 16 2 C -0.10 -1.08 2.32 -10.79 -0.02 -1.11 16 3 C -0.15 -1.28 8.84 71.98 0.64 -0.64 16 4 C 0.11 1.17 1.91 30.63 0.06 1.22 16 5 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 6 O -0.39 -5.67 9.25 -148.98 -1.38 -7.04 16 7 C 0.06 0.62 6.84 72.01 0.49 1.11 16 8 C -0.16 -1.74 5.78 30.68 0.18 -1.57 16 9 C -0.12 -1.15 5.43 30.71 0.17 -0.99 16 10 C -0.13 -1.34 1.85 -10.70 -0.02 -1.36 16 11 H 0.11 0.86 6.57 -2.39 -0.02 0.85 16 12 C 0.12 2.04 4.45 86.38 0.38 2.43 16 13 N -0.68 -12.99 5.25 -464.40 -2.44 -15.43 16 14 C 0.51 13.15 7.89 87.27 0.69 13.84 16 15 O -0.54 -16.24 16.48 -3.22 -0.05 -16.29 16 16 C 0.50 14.65 7.89 87.27 0.69 15.34 16 17 O -0.55 -18.03 16.48 -3.26 -0.05 -18.08 16 18 N -0.69 -20.23 5.55 -464.40 -2.58 -22.80 16 19 C 0.13 4.35 5.67 86.38 0.49 4.84 16 20 C -0.11 -4.10 5.27 30.60 0.16 -3.94 16 21 C 0.02 1.26 4.97 29.85 0.15 1.41 16 22 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 23 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 24 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 25 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 26 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 28 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 29 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.69 7.68 -2.39 -0.02 0.67 16 33 H 0.07 0.98 6.28 -2.39 -0.01 0.96 16 34 H 0.06 0.53 6.48 -2.39 -0.02 0.51 16 35 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.84 6.52 -2.39 -0.02 0.82 16 41 H 0.07 0.72 7.15 -2.39 -0.02 0.71 16 42 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 1.30 6.12 -2.38 -0.01 1.28 16 44 H 0.07 1.35 6.04 -2.39 -0.01 1.34 16 45 H 0.42 6.85 7.15 -92.71 -0.66 6.19 16 46 H 0.42 11.19 7.94 -92.71 -0.74 10.45 16 47 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 50 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 51 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 52 H 0.00 -0.18 8.14 -2.39 -0.02 -0.19 16 53 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -68.73 416.01 0.72 -68.01 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -0.49 Total: 21.77 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 5.39 Total: 0.01 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -4.73 Total: -94.36 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -1.49 Total: -41.41 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -68.73 0.72 -68.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261149944.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.835 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds