Wall clock time and date at job start Sat Apr 11 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47178 * 2 1 4 4 C 1.50699 * 109.47190 * 120.00109 * 2 1 3 5 5 O 1.21280 * 120.00370 * 119.99672 * 4 2 1 6 6 N 1.34777 * 119.99719 * 300.00437 * 4 2 1 7 7 C 1.46502 * 119.99668 * 180.02562 * 6 4 2 8 8 C 1.53007 * 109.46950 * 179.97438 * 7 6 4 9 9 H 1.08995 * 109.51132 * 304.89970 * 8 7 6 10 10 C 1.52877 * 109.57965 * 184.87742 * 8 7 6 11 11 N 1.47163 * 108.60343 * 187.92291 * 10 8 7 12 12 C 1.36932 * 120.97952 * 230.50092 * 11 10 8 13 13 H 1.08004 * 120.00434 * 26.43829 * 12 11 10 14 14 C 1.38809 * 119.99809 * 206.43981 * 12 11 10 15 15 N 1.31615 * 120.00076 * 16.42051 * 14 12 11 16 16 Si 1.86807 * 119.99880 * 196.42411 * 14 12 11 17 17 H 1.48497 * 109.46878 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47158 * 299.99723 * 16 14 12 19 19 H 1.48501 * 109.47205 * 59.99823 * 16 14 12 20 20 C 1.47147 * 118.03482 * 50.23087 * 11 10 8 21 21 C 1.53295 * 108.38705 * 309.71326 * 20 11 10 22 22 O 1.42960 * 109.51055 * 64.99765 * 8 7 6 23 23 C 1.52998 * 109.47293 * 239.99947 * 2 1 3 24 24 H 1.08997 * 109.48195 * 180.02562 * 23 2 1 25 25 C 1.53094 * 109.47857 * 59.99978 * 23 2 1 26 26 C 1.53182 * 109.16296 * 182.40858 * 25 23 2 27 27 C 1.53172 * 109.03544 * 56.97977 * 26 25 23 28 28 C 1.53090 * 109.16736 * 303.01878 * 27 26 25 29 29 O 1.42905 * 109.48161 * 300.06155 * 23 2 1 30 30 H 1.08999 * 109.47148 * 299.99991 * 1 2 3 31 31 H 1.09005 * 109.47092 * 60.00323 * 1 2 3 32 32 H 1.09005 * 109.47010 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47254 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47168 * 300.00097 * 3 2 1 35 35 H 1.08999 * 109.47074 * 59.99963 * 3 2 1 36 36 H 0.96998 * 120.00646 * 359.97438 * 6 4 2 37 37 H 1.09000 * 109.47486 * 59.99958 * 7 6 4 38 38 H 1.09001 * 109.47209 * 299.99485 * 7 6 4 39 39 H 1.09004 * 109.61577 * 68.10805 * 10 8 7 40 40 H 1.08991 * 109.52866 * 307.68505 * 10 8 7 41 41 H 0.97005 * 120.00075 * 179.97438 * 15 14 12 42 42 H 1.08999 * 109.68278 * 69.43628 * 20 11 10 43 43 H 1.09003 * 109.68227 * 189.99159 * 20 11 10 44 44 H 1.08999 * 109.51732 * 172.22741 * 21 20 11 45 45 H 1.08997 * 109.51208 * 292.33143 * 21 20 11 46 46 H 1.09002 * 109.52711 * 302.31300 * 25 23 2 47 47 H 1.09004 * 109.52400 * 62.50898 * 25 23 2 48 48 H 1.09004 * 109.54426 * 176.84909 * 26 25 23 49 49 H 1.08999 * 109.54367 * 297.02689 * 26 25 23 50 50 H 1.09003 * 109.52443 * 62.92948 * 27 26 25 51 51 H 1.09001 * 109.52335 * 183.04646 * 27 26 25 52 52 H 1.08996 * 109.48017 * 177.58823 * 28 27 26 53 53 H 1.08998 * 109.48196 * 297.62655 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7295 -1.6965 1.1192 6 7 1.7066 -0.2500 2.4545 7 6 2.1955 -0.9403 3.6507 8 6 1.6858 -0.2188 4.9000 9 1 1.9752 0.8312 4.8575 10 6 2.2920 -0.8630 6.1468 11 7 1.6462 -0.2839 7.3357 12 6 2.3918 0.2108 8.3722 13 1 3.3913 0.5782 8.1914 14 6 1.8631 0.2402 9.6553 15 7 0.8030 -0.4832 9.9470 16 14 2.6563 1.3065 10.9682 17 1 1.9072 1.1622 12.2422 18 1 4.0639 0.8783 11.1698 19 1 2.6280 2.7269 10.5359 20 6 0.1758 -0.2467 7.3749 21 6 -0.3274 0.3723 6.0658 22 8 0.2610 -0.3193 4.9615 23 6 2.0400 -0.7212 -1.2492 24 1 3.1300 -0.7217 -1.2491 25 6 1.5298 0.0003 -2.4993 26 6 1.9942 -0.7617 -3.7444 27 6 1.4927 -2.2066 -3.6618 28 6 2.0043 -2.8430 -2.3668 29 8 1.5626 -2.0682 -1.2502 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.1492 0.5388 2.5436 37 1 3.2855 -0.9398 3.6506 38 1 1.8325 -1.9681 3.6509 39 1 3.3633 -0.6640 6.1774 40 1 2.1184 -1.9387 6.1222 41 1 0.4338 -0.4630 10.8438 42 1 -0.2145 -1.2594 7.4759 43 1 -0.1538 0.3601 8.2183 44 1 -1.4125 0.2836 6.0145 45 1 -0.0460 1.4247 6.0289 46 1 0.4406 0.0369 -2.4799 47 1 1.9289 1.0144 -2.5231 48 1 1.5876 -0.2850 -4.6364 49 1 3.0831 -0.7545 -3.7913 50 1 0.4027 -2.2147 -3.6658 51 1 1.8641 -2.7706 -4.5174 52 1 1.6151 -3.8575 -2.2819 53 1 3.0938 -2.8714 -2.3815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270651033.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:06 Heat of formation + Delta-G solvation = -139.502541 kcal Electronic energy + Delta-G solvation = -31311.352677 eV Core-core repulsion = 27182.341134 eV Total energy + Delta-G solvation = -4129.011543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.60294 -40.31733 -39.61173 -36.50585 -36.36379 -35.71653 -34.45086 -33.36982 -32.34323 -30.78489 -29.20552 -28.29211 -27.23234 -25.93422 -25.27600 -24.94001 -23.71396 -22.74337 -21.62566 -21.05324 -20.04745 -18.90207 -18.01520 -17.51745 -17.37128 -17.10255 -16.91630 -16.58753 -16.16197 -15.93387 -15.65137 -15.51855 -15.36971 -15.35256 -15.00718 -14.65999 -14.59492 -14.47051 -14.00825 -13.77965 -13.51333 -13.28615 -13.24361 -13.18564 -12.99800 -12.94971 -12.67678 -12.54549 -12.53003 -12.20108 -12.11937 -12.09935 -11.98123 -11.88009 -11.81139 -11.43675 -11.33372 -11.14551 -10.81449 -10.67718 -10.53022 -10.22768 -10.05508 -8.76428 -7.91980 -5.40109 1.46882 1.48714 1.55982 1.72376 2.16424 2.47998 2.77168 2.84225 3.23059 3.47368 3.62431 3.63364 3.95394 3.97735 4.00023 4.04557 4.06113 4.10389 4.17327 4.24522 4.32054 4.37247 4.47594 4.51773 4.60948 4.63325 4.68209 4.70071 4.74375 4.76582 4.81923 4.88692 4.89843 4.95221 4.97578 5.01849 5.04986 5.10040 5.12571 5.20779 5.23085 5.30824 5.36020 5.44197 5.47603 5.54268 5.59950 6.25033 6.32282 6.41051 6.60910 7.05102 7.31384 7.72840 8.26970 9.14099 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.029836 B = 0.002101 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.227844 B =13320.826610 C =13353.834517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.141 4.141 4 C 0.517 3.483 5 O -0.575 6.575 6 N -0.712 5.712 7 C 0.142 3.858 8 C 0.082 3.918 9 H 0.071 0.929 10 C 0.116 3.884 11 N -0.612 5.612 12 C -0.268 4.268 13 H 0.073 0.927 14 C -0.051 4.051 15 N -0.936 5.936 16 Si 0.974 3.026 17 H -0.294 1.294 18 H -0.276 1.276 19 H -0.274 1.274 20 C 0.143 3.857 21 C 0.054 3.946 22 O -0.390 6.390 23 C 0.113 3.887 24 H 0.042 0.958 25 C -0.149 4.149 26 C -0.122 4.122 27 C -0.151 4.151 28 C 0.055 3.945 29 O -0.391 6.391 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.412 0.588 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.014 0.986 41 H 0.252 0.748 42 H -0.003 1.003 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.053 0.947 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.061 0.939 50 H 0.070 0.930 51 H 0.085 0.915 52 H 0.090 0.910 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 5.890 -28.669 29.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.073 4.073 3 C -0.198 4.198 4 C 0.304 3.696 5 O -0.453 6.453 6 N -0.365 5.365 7 C 0.017 3.983 8 C 0.023 3.977 9 H 0.089 0.911 10 C -0.010 4.010 11 N -0.337 5.337 12 C -0.397 4.397 13 H 0.090 0.910 14 C -0.246 4.246 15 N -0.582 5.582 16 Si 0.801 3.199 17 H -0.220 1.220 18 H -0.202 1.202 19 H -0.199 1.199 20 C 0.017 3.983 21 C -0.023 4.023 22 O -0.309 6.309 23 C 0.055 3.945 24 H 0.060 0.940 25 C -0.186 4.186 26 C -0.160 4.160 27 C -0.189 4.189 28 C -0.022 4.022 29 O -0.310 6.310 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.248 0.752 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.032 0.968 41 H 0.061 0.939 42 H 0.015 0.985 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.114 0.886 48 H 0.104 0.896 49 H 0.080 0.920 50 H 0.089 0.911 51 H 0.104 0.896 52 H 0.108 0.892 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.636 4.988 -28.554 28.993 hybrid contribution 0.441 0.174 1.531 1.603 sum -0.195 5.162 -27.022 27.512 Atomic orbital electron populations 1.21841 0.90855 1.02416 1.04040 1.20892 0.98821 0.97019 0.90522 1.21964 1.01606 0.91136 1.05098 1.21064 0.79359 0.83966 0.85191 1.90677 1.39717 1.27712 1.87222 1.45830 1.53622 1.32260 1.04740 1.21116 0.98892 0.95912 0.82337 1.22533 0.82032 0.99373 0.93802 0.91072 1.21516 0.97282 0.95149 0.87069 1.44322 1.01900 1.70132 1.17339 1.19517 0.99643 1.33700 0.86888 0.90956 1.25871 0.99416 1.00272 0.99086 1.70187 1.26523 1.41312 1.20171 0.85253 0.77788 0.79034 0.77823 1.22048 1.20180 1.19938 1.21316 0.83419 0.97297 0.96243 1.23163 0.98145 0.95100 0.85940 1.87816 1.19598 1.75574 1.47908 1.21837 0.96557 0.82342 0.93735 0.94000 1.22351 1.02658 1.00262 0.93313 1.21614 1.00980 0.95069 0.98325 1.22166 1.01811 0.97216 0.97675 1.22638 0.98222 0.95219 0.86075 1.87962 1.73684 1.23303 1.46084 0.91216 0.88889 0.93595 0.92294 0.88309 0.90386 0.75177 0.89751 0.92762 0.90995 0.96829 0.93905 0.98509 0.91352 0.87323 0.92853 0.89981 0.88625 0.89649 0.91997 0.91147 0.89619 0.89160 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 7.88 71.98 0.57 -1.67 16 2 C -0.07 -1.33 0.48 -52.93 -0.03 -1.35 16 3 C -0.14 -1.76 8.02 71.98 0.58 -1.18 16 4 C 0.52 14.41 6.33 87.66 0.56 14.96 16 5 O -0.57 -21.13 15.29 14.39 0.22 -20.91 16 6 N -0.71 -18.47 5.29 -463.05 -2.45 -20.92 16 7 C 0.14 4.36 5.34 86.38 0.46 4.83 16 8 C 0.08 2.79 2.80 30.56 0.09 2.87 16 9 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 10 C 0.12 4.90 6.00 86.21 0.52 5.42 16 11 N -0.61 -30.96 3.05 -698.34 -2.13 -33.10 16 12 C -0.27 -14.59 9.65 84.03 0.81 -13.78 16 13 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 14 C -0.05 -2.82 4.95 84.86 0.42 -2.40 16 15 N -0.94 -55.14 11.14 21.65 0.24 -54.90 16 16 Si 0.97 44.11 29.58 68.60 2.03 46.14 16 17 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 C 0.14 6.91 5.44 86.35 0.47 7.38 16 21 C 0.05 1.99 6.99 72.08 0.50 2.49 16 22 O -0.39 -14.07 10.33 -148.98 -1.54 -15.61 16 23 C 0.11 2.28 1.45 30.63 0.04 2.32 16 24 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 25 C -0.15 -1.84 4.70 30.69 0.14 -1.70 16 26 C -0.12 -1.38 6.03 30.71 0.19 -1.20 16 27 C -0.15 -1.99 6.14 30.68 0.19 -1.80 16 28 C 0.06 1.08 6.84 72.01 0.49 1.57 16 29 O -0.39 -9.98 8.63 -131.56 -1.14 -11.12 16 30 H 0.07 1.05 7.56 -2.39 -0.02 1.03 16 31 H 0.09 1.06 6.38 -2.38 -0.02 1.05 16 32 H 0.04 1.00 7.68 -2.38 -0.02 0.98 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.73 6.49 -2.39 -0.02 0.71 16 35 H 0.08 0.85 7.56 -2.39 -0.02 0.83 16 36 H 0.41 8.78 7.31 -92.71 -0.68 8.10 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 2.86 7.96 -2.39 -0.02 2.84 16 40 H 0.01 0.62 8.13 -2.39 -0.02 0.60 16 41 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 42 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.07 3.64 6.16 -2.39 -0.01 3.63 16 44 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.08 0.95 6.31 -2.39 -0.02 0.94 16 47 H 0.10 0.80 6.57 -2.39 -0.02 0.79 16 48 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 53 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -72.61 401.93 1.44 -71.17 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.21 Total: 22.47 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 6.00 Total: 16.77 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -4.34 Total: -108.92 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -2.45 Total: -47.64 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -72.61 1.44 -71.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270651033.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.330 kcal (2) G-P(sol) polarization free energy of solvation -72.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds