Wall clock time and date at job start Sat Apr 11 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99816 * 2 1 4 4 C 1.53000 * 109.47261 * 60.00158 * 3 2 1 5 5 C 1.53003 * 109.47443 * 300.00122 * 3 2 1 6 6 C 1.53002 * 109.46877 * 180.02562 * 3 2 1 7 7 N 1.46903 * 109.47085 * 65.00215 * 6 3 2 8 8 C 1.48579 * 110.99932 * 287.42165 * 7 6 3 9 9 C 1.55045 * 103.28625 * 200.56245 * 8 7 6 10 10 C 1.54118 * 102.80708 * 37.01847 * 9 8 7 11 11 C 1.48030 * 110.99994 * 170.00095 * 7 6 3 12 12 C 1.52438 * 110.11470 * 219.03114 * 10 9 8 13 13 N 1.46203 * 109.94477 * 286.17823 * 12 10 9 14 14 C 1.46499 * 118.77276 * 162.46315 * 13 12 10 15 15 C 1.52992 * 109.47267 * 90.00185 * 14 13 12 16 16 C 1.50700 * 109.47257 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99988 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00047 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99854 * 359.72512 * 18 16 15 21 21 H 1.48498 * 109.46909 * 90.00086 * 20 18 16 22 22 H 1.48497 * 109.46701 * 209.99996 * 20 18 16 23 23 H 1.48500 * 109.46867 * 330.00101 * 20 18 16 24 24 C 1.33848 * 122.45328 * 342.74333 * 13 12 10 25 25 O 1.21275 * 118.69746 * 182.12648 * 24 13 12 26 26 C 1.50288 * 122.61811 * 1.85881 * 24 13 12 27 27 O 1.42579 * 110.04257 * 97.46881 * 10 9 8 28 28 H 1.09000 * 109.47119 * 59.99264 * 1 2 3 29 29 H 1.08997 * 109.47361 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46530 * 300.00117 * 1 2 3 31 31 H 1.09007 * 109.46997 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.47311 * 299.99927 * 4 3 2 33 33 H 1.09006 * 109.46824 * 60.00142 * 4 3 2 34 34 H 1.08999 * 109.47038 * 300.00759 * 5 3 2 35 35 H 1.09004 * 109.46647 * 60.00112 * 5 3 2 36 36 H 1.09001 * 109.47101 * 180.02562 * 5 3 2 37 37 H 1.09000 * 109.47377 * 305.00218 * 6 3 2 38 38 H 1.08996 * 109.47241 * 185.00164 * 6 3 2 39 39 H 1.09010 * 110.65336 * 319.00629 * 8 7 6 40 40 H 1.08994 * 110.66179 * 82.10976 * 8 7 6 41 41 H 1.09003 * 110.74254 * 278.69058 * 9 8 7 42 42 H 1.09000 * 110.74523 * 155.35139 * 9 8 7 43 43 H 1.09000 * 109.97917 * 26.38113 * 11 7 6 44 44 H 1.09004 * 110.01199 * 265.11172 * 11 7 6 45 45 H 1.09009 * 109.39051 * 166.03919 * 12 10 9 46 46 H 1.08997 * 109.31832 * 46.27656 * 12 10 9 47 47 H 1.09004 * 109.47024 * 329.99901 * 14 13 12 48 48 H 1.09005 * 109.47136 * 210.00285 * 14 13 12 49 49 H 1.09004 * 109.47330 * 59.99904 * 15 14 13 50 50 H 1.08997 * 109.47279 * 300.00390 * 15 14 13 51 51 H 0.97001 * 119.99646 * 180.02562 * 19 18 16 52 52 H 1.08999 * 109.54278 * 223.77866 * 26 24 13 53 53 H 1.09000 * 109.12584 * 104.02623 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5588 2.0648 -1.2492 6 6 3.5355 1.1846 -0.0006 7 7 3.9769 0.5627 -1.2562 8 6 3.6474 -0.8859 -1.2775 9 6 4.6130 -1.4553 -2.3486 10 6 5.8970 -0.6334 -2.1225 11 6 5.4479 0.6447 -1.4003 12 6 6.5425 -0.2908 -3.4603 13 7 7.1775 -1.4798 -4.0266 14 6 7.5129 -1.4886 -5.4527 15 6 8.9285 -0.9418 -5.6471 16 6 9.2736 -0.9514 -7.1140 17 1 8.5553 -1.3119 -7.8354 18 6 10.5069 -0.5010 -7.5351 19 7 10.8080 -0.5089 -8.8153 20 14 11.7471 0.1283 -6.2878 21 1 12.5946 -0.9981 -5.8208 22 1 12.6037 1.1632 -6.9205 23 1 11.0286 0.7201 -5.1307 24 6 7.4590 -2.5626 -3.2919 25 8 8.0220 -3.4964 -3.8229 26 6 7.1103 -2.6652 -1.8337 27 8 6.8107 -1.3679 -1.3110 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 2.0026 3.0604 1.2494 32 1 0.4723 2.1508 1.2493 33 1 1.8806 1.5238 2.1392 34 1 1.8803 1.5239 -2.1392 35 1 0.4722 2.1508 -1.2491 36 1 2.0025 3.0604 -1.2494 37 1 3.8515 0.5682 0.8409 38 1 3.9786 2.1764 0.0889 39 1 3.8417 -1.3387 -0.3051 40 1 2.6100 -1.0400 -1.5742 41 1 4.2192 -1.2882 -3.3512 42 1 4.7980 -2.5157 -2.1771 43 1 5.9158 0.7011 -0.4175 44 1 5.7166 1.5203 -1.9913 45 1 7.2941 0.4846 -3.3115 46 1 5.7782 0.0729 -4.1469 47 1 6.8042 -0.8638 -5.9964 48 1 7.4624 -2.5094 -5.8315 49 1 9.6372 -1.5665 -5.1034 50 1 8.9789 0.0790 -5.2683 51 1 11.6757 -0.1924 -9.1114 52 1 7.9517 -3.0905 -1.2866 53 1 6.2401 -3.3115 -1.7191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273808171.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:18 Heat of formation + Delta-G solvation = -128.184560 kcal Electronic energy + Delta-G solvation = -31710.026169 eV Core-core repulsion = 27581.505410 eV Total energy + Delta-G solvation = -4128.520758 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.25296 -40.50747 -39.52817 -37.59006 -37.05910 -35.11196 -34.27779 -32.66052 -31.64542 -30.86103 -28.87686 -28.25940 -28.16588 -26.96785 -26.31045 -25.42826 -23.27014 -22.38020 -21.76344 -20.73445 -19.68258 -19.08989 -18.74286 -17.74632 -17.44116 -17.13002 -16.93772 -16.73581 -16.26774 -16.03439 -15.86332 -15.65683 -15.23871 -15.04730 -14.90749 -14.75888 -14.58483 -14.48029 -14.18384 -14.05749 -13.83048 -13.49466 -13.26997 -13.23391 -12.98370 -12.96375 -12.74659 -12.65230 -12.46693 -12.31155 -12.23749 -12.18610 -12.07978 -11.99474 -11.88220 -11.72524 -11.55886 -11.32675 -11.20455 -10.82346 -10.41808 -10.35844 -9.74704 -9.39358 -8.34566 -6.38954 1.30209 1.31973 1.42746 1.43976 1.82573 2.30821 2.42287 2.92965 3.00274 3.02444 3.20458 3.50737 3.54063 3.66747 3.88703 4.05807 4.10727 4.17159 4.19534 4.30280 4.33771 4.39726 4.45008 4.50341 4.52667 4.55273 4.58628 4.59884 4.64364 4.72323 4.78723 4.80081 4.80958 4.83781 4.96010 4.96604 5.01201 5.03189 5.06266 5.14717 5.23545 5.27531 5.29751 5.40476 5.54053 5.60060 5.69986 5.96145 6.04182 6.19491 6.38962 6.41725 6.66830 7.01405 7.25581 8.81730 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.002522 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.231031 B =11097.977311 C =11555.653651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.114 3.886 4 C -0.175 4.175 5 C -0.163 4.163 6 C 0.059 3.941 7 N -0.508 5.508 8 C 0.062 3.938 9 C -0.153 4.153 10 C 0.094 3.906 11 C 0.057 3.943 12 C 0.095 3.905 13 N -0.598 5.598 14 C 0.134 3.866 15 C -0.011 4.011 16 C -0.530 4.530 17 H 0.040 0.960 18 C 0.010 3.990 19 N -0.944 5.944 20 Si 0.948 3.052 21 H -0.277 1.277 22 H -0.275 1.275 23 H -0.249 1.249 24 C 0.472 3.528 25 O -0.589 6.589 26 C 0.060 3.940 27 O -0.365 6.365 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.102 0.898 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.076 0.924 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.055 0.945 49 H -0.003 1.003 50 H 0.026 0.974 51 H 0.268 0.732 52 H 0.142 0.858 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.252 6.917 25.609 35.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.075 3.925 4 C -0.233 4.233 5 C -0.220 4.220 6 C -0.069 4.069 7 N -0.232 5.232 8 C -0.065 4.065 9 C -0.191 4.191 10 C 0.053 3.947 11 C -0.071 4.071 12 C -0.028 4.028 13 N -0.329 5.329 14 C 0.011 3.989 15 C -0.049 4.049 16 C -0.569 4.569 17 H 0.058 0.942 18 C -0.187 4.187 19 N -0.585 5.585 20 Si 0.771 3.229 21 H -0.203 1.203 22 H -0.200 1.200 23 H -0.173 1.173 24 C 0.261 3.739 25 O -0.471 6.471 26 C -0.019 4.019 27 O -0.283 6.283 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.120 0.880 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.126 0.874 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.107 0.893 48 H 0.074 0.926 49 H 0.016 0.984 50 H 0.044 0.956 51 H 0.077 0.923 52 H 0.159 0.841 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.934 6.715 24.988 34.575 hybrid contribution 1.098 -0.384 0.122 1.170 sum -21.836 6.332 25.110 33.873 Atomic orbital electron populations 1.22858 0.80912 1.03041 1.00602 1.87976 1.20353 1.28007 1.95097 1.21539 0.92390 0.83368 0.95194 1.22364 1.02416 1.01244 0.97227 1.22212 1.00805 1.00810 0.98177 1.22364 0.93533 1.00776 0.90212 1.64929 1.10330 1.13768 1.34172 1.23094 0.99732 0.87009 0.96682 1.23216 0.94578 0.99866 1.01412 1.22339 0.89003 0.93900 0.89431 1.22716 0.88586 0.94970 1.00786 1.22323 0.98216 0.87007 0.95242 1.47760 1.59185 1.15812 1.10184 1.21330 0.96860 1.01249 0.79432 1.19676 0.94310 0.96007 0.94933 1.21266 1.00945 1.42373 0.92291 0.94185 1.25912 1.00267 0.95447 0.97120 1.70042 1.23321 1.48852 1.16252 0.85702 0.78847 0.78597 0.79718 1.20282 1.19992 1.17276 1.21663 0.78663 0.82122 0.91473 1.90739 1.43693 1.39166 1.73487 1.22852 1.04409 0.86929 0.87695 1.88081 1.64297 1.27667 1.48269 0.93493 0.89467 0.93205 0.90306 0.91401 0.92199 0.91785 0.92536 0.91229 0.94155 0.87954 0.93940 0.88890 0.89589 0.90278 0.91382 0.87391 0.90601 0.87567 0.89280 0.92629 0.98448 0.95559 0.92292 0.84065 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.21 113.37 1.16 1.38 16 2 O -0.39 -5.78 7.72 -148.98 -1.15 -6.93 16 3 C 0.11 1.37 0.88 -10.79 -0.01 1.36 16 4 C -0.17 -1.54 8.25 71.98 0.59 -0.94 16 5 C -0.16 -1.92 8.04 71.98 0.58 -1.34 16 6 C 0.06 0.76 4.06 86.30 0.35 1.11 16 7 N -0.51 -7.85 4.27 -883.27 -3.77 -11.62 16 8 C 0.06 1.06 5.32 86.68 0.46 1.52 16 9 C -0.15 -2.87 5.84 31.67 0.18 -2.68 16 10 C 0.09 1.92 0.98 -10.43 -0.01 1.91 16 11 C 0.06 0.93 6.14 86.26 0.53 1.46 16 12 C 0.09 2.36 5.12 86.25 0.44 2.80 16 13 N -0.60 -20.33 2.80 -825.58 -2.31 -22.64 16 14 C 0.13 5.58 5.23 86.38 0.45 6.04 16 15 C -0.01 -0.55 4.36 29.85 0.13 -0.42 16 16 C -0.53 -31.66 9.66 25.60 0.25 -31.41 16 17 H 0.04 2.58 7.99 -2.91 -0.02 2.56 16 18 C 0.01 0.61 5.47 84.66 0.46 1.08 16 19 N -0.94 -60.32 13.96 21.45 0.30 -60.02 16 20 Si 0.95 46.40 27.47 68.60 1.88 48.28 16 21 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 22 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 24 C 0.47 16.53 7.40 87.67 0.65 17.18 16 25 O -0.59 -26.44 16.37 -3.01 -0.05 -26.49 16 26 C 0.06 1.46 6.40 71.11 0.46 1.92 16 27 O -0.36 -8.50 10.31 -148.98 -1.54 -10.04 16 28 H 0.05 0.45 6.42 -2.39 -0.02 0.44 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.41 6.42 -2.39 -0.02 0.39 16 31 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.07 0.53 6.54 -2.39 -0.02 0.51 16 33 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.06 0.98 7.47 -2.39 -0.02 0.97 16 35 H 0.06 0.59 6.54 -2.39 -0.02 0.57 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 37 H 0.04 0.58 7.83 -2.39 -0.02 0.56 16 38 H 0.10 1.03 8.08 -2.39 -0.02 1.01 16 39 H 0.04 0.78 7.81 -2.38 -0.02 0.76 16 40 H 0.09 1.65 6.82 -2.39 -0.02 1.64 16 41 H 0.09 1.67 7.65 -2.39 -0.02 1.65 16 42 H 0.08 1.49 5.66 -2.39 -0.01 1.48 16 43 H 0.07 1.10 7.60 -2.39 -0.02 1.08 16 44 H 0.11 1.55 7.65 -2.38 -0.02 1.54 16 45 H 0.08 1.91 8.08 -2.38 -0.02 1.89 16 46 H 0.11 2.32 7.71 -2.39 -0.02 2.30 16 47 H 0.09 3.36 7.94 -2.38 -0.02 3.34 16 48 H 0.06 2.60 7.29 -2.38 -0.02 2.58 16 49 H 0.00 -0.16 7.58 -2.38 -0.02 -0.17 16 50 H 0.03 1.25 7.19 -2.39 -0.02 1.23 16 51 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 52 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 53 H 0.11 2.21 6.31 -2.39 -0.02 2.19 16 Total: -1.00 -75.74 398.59 0.87 -74.87 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.83 Total: 13.62 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 6.67 Total: 0.96 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -5.78 Total: -94.28 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -2.74 Total: -43.46 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.88 Total: 48.28 kcal Total: -75.74 0.87 -74.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273808171.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.310 kcal (2) G-P(sol) polarization free energy of solvation -75.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds