Wall clock time and date at job start Sat Apr 11 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99515 * 2 1 4 4 C 1.53003 * 109.47446 * 59.99627 * 3 2 1 5 5 C 1.53000 * 109.47165 * 299.99614 * 3 2 1 6 6 C 1.53003 * 109.47116 * 179.97438 * 3 2 1 7 7 N 1.46904 * 109.46953 * 294.65735 * 6 3 2 8 8 C 1.48587 * 110.99909 * 59.01970 * 7 6 3 9 9 C 1.55043 * 103.27846 * 159.44471 * 8 7 6 10 10 C 1.54107 * 102.81368 * 322.97397 * 9 8 7 11 11 C 1.48037 * 110.99971 * 176.43549 * 7 6 3 12 12 C 1.52433 * 110.13577 * 140.96401 * 10 9 8 13 13 N 1.46199 * 109.95279 * 169.22206 * 12 10 9 14 14 C 1.46499 * 118.77235 * 162.45348 * 13 12 10 15 15 C 1.53003 * 109.46733 * 270.01930 * 14 13 12 16 16 C 1.50698 * 109.46944 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99964 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99931 * 179.97438 * 16 15 14 19 19 N 1.31505 * 120.00074 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99730 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47097 * 60.00434 * 20 18 16 22 22 H 1.48508 * 109.47072 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47640 * 300.00136 * 20 18 16 24 24 C 1.33844 * 122.45243 * 342.46970 * 13 12 10 25 25 O 1.21283 * 118.69902 * 182.42426 * 24 13 12 26 26 C 1.50301 * 122.60529 * 2.41041 * 24 13 12 27 27 O 1.42586 * 110.04709 * 262.53934 * 10 9 8 28 28 H 1.08993 * 109.47552 * 300.00357 * 1 2 3 29 29 H 1.09002 * 109.46686 * 60.00665 * 1 2 3 30 30 H 1.09000 * 109.46746 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47308 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.46834 * 299.99768 * 4 3 2 33 33 H 1.09001 * 109.47005 * 59.99918 * 4 3 2 34 34 H 1.09004 * 109.47214 * 306.23167 * 5 3 2 35 35 H 1.09003 * 109.47514 * 66.23281 * 5 3 2 36 36 H 1.09004 * 109.47230 * 186.23751 * 5 3 2 37 37 H 1.08994 * 109.47602 * 174.65791 * 6 3 2 38 38 H 1.09001 * 109.46996 * 54.65492 * 6 3 2 39 39 H 1.08999 * 110.65658 * 40.99723 * 8 7 6 40 40 H 1.08995 * 110.65488 * 277.89450 * 8 7 6 41 41 H 1.09000 * 110.74045 * 204.63842 * 9 8 7 42 42 H 1.09003 * 110.74497 * 81.30406 * 9 8 7 43 43 H 1.08999 * 109.97752 * 94.89522 * 11 7 6 44 44 H 1.09000 * 109.97851 * 333.60886 * 11 7 6 45 45 H 1.08995 * 109.39055 * 289.37477 * 12 10 9 46 46 H 1.09007 * 109.38341 * 49.07836 * 12 10 9 47 47 H 1.08993 * 109.46997 * 30.02053 * 14 13 12 48 48 H 1.09003 * 109.46847 * 150.02443 * 14 13 12 49 49 H 1.09000 * 109.47211 * 300.00125 * 15 14 13 50 50 H 1.09003 * 109.46897 * 60.00091 * 15 14 13 51 51 H 0.97003 * 119.99959 * 180.02562 * 19 18 16 52 52 H 1.09008 * 109.39996 * 223.40779 * 26 24 13 53 53 H 1.08999 * 109.33204 * 103.62895 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5586 2.0649 1.2492 5 6 1.5587 2.0647 -1.2493 6 6 3.5354 1.1848 0.0006 7 7 3.9774 0.5704 1.2597 8 6 3.3736 -0.7757 1.4361 9 6 4.3171 -1.4579 2.4599 10 6 5.7060 -0.9328 2.0473 11 6 5.4427 0.3592 1.2612 12 6 6.5457 -0.6411 3.2856 13 7 7.9336 -0.3912 2.8997 14 6 8.8206 0.2801 3.8530 15 6 8.7468 1.7934 3.6396 16 6 9.6597 2.4840 4.6198 17 1 10.2353 1.9017 5.3242 18 6 9.7610 3.8590 4.6166 19 7 9.0606 4.5679 3.7585 20 14 10.8920 4.7150 5.8320 21 1 12.2871 4.2521 5.6206 22 1 10.8206 6.1838 5.6249 23 1 10.4672 4.3898 7.2173 24 6 8.4238 -0.7526 1.7079 25 8 9.5972 -0.5520 1.4757 26 6 7.5780 -1.3975 0.6460 27 8 6.3654 -1.8907 1.2223 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.0022 3.0605 1.2494 32 1 0.4720 2.1509 1.2491 33 1 1.8802 1.5240 2.1392 34 1 1.7820 1.4711 -2.1358 35 1 0.4855 2.2476 -1.1954 36 1 2.0871 3.0164 -1.3069 37 1 3.9784 2.1761 -0.0950 38 1 3.8511 0.5634 -0.8374 39 1 3.3700 -1.3221 0.4929 40 1 2.3639 -0.6944 1.8384 41 1 4.2704 -2.5427 2.3646 42 1 4.0733 -1.1477 3.4760 43 1 5.9394 1.1988 1.7475 44 1 5.8047 0.2534 0.2386 45 1 6.1477 0.2370 3.7941 46 1 6.5060 -1.4970 3.9596 47 1 8.5089 0.0409 4.8697 48 1 9.8447 -0.0593 3.6974 49 1 9.0584 2.0325 2.6228 50 1 7.7227 2.1327 3.7951 51 1 9.1321 5.5353 3.7561 52 1 8.1283 -2.2246 0.1974 53 1 7.3406 -0.6617 -0.1224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273808173.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:21 Heat of formation + Delta-G solvation = -131.279081 kcal Electronic energy + Delta-G solvation = -32182.729504 eV Core-core repulsion = 28054.074557 eV Total energy + Delta-G solvation = -4128.654947 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.27011 -40.59595 -39.52617 -37.52401 -37.03286 -35.14437 -34.38624 -32.43110 -31.86128 -30.03415 -29.12083 -28.29334 -28.18449 -27.09643 -26.29875 -25.45432 -23.47568 -22.50036 -21.81627 -20.76334 -19.50791 -18.87895 -18.68716 -17.71478 -17.57169 -17.19845 -16.81123 -16.68633 -16.39087 -16.13351 -15.81446 -15.65563 -15.27487 -15.19095 -14.89474 -14.61039 -14.47948 -14.30289 -14.14117 -14.03664 -13.61430 -13.41050 -13.33728 -13.19433 -13.01724 -12.84141 -12.82898 -12.71420 -12.62640 -12.44719 -12.28393 -12.16209 -12.05768 -11.99617 -11.90015 -11.79389 -11.48583 -11.40417 -11.20284 -10.59129 -10.43403 -10.37083 -9.69879 -9.42608 -8.23257 -6.35658 1.38210 1.42555 1.43205 1.50384 1.85351 2.39342 2.47962 2.84991 2.94209 3.10163 3.19319 3.42046 3.52892 3.70195 3.82058 4.01650 4.03283 4.10982 4.19049 4.28407 4.33581 4.41846 4.43233 4.50091 4.55693 4.58974 4.60369 4.61954 4.66014 4.70934 4.73818 4.74186 4.79956 4.89378 4.93202 4.96519 4.98776 5.10844 5.16305 5.17071 5.20407 5.21676 5.42787 5.48384 5.54161 5.67758 5.78572 5.92895 6.00858 6.15411 6.35860 6.40083 6.78283 7.02277 7.33602 8.88531 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.003170 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.086155 B = 8830.726710 C =10322.572326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.389 6.389 3 C 0.118 3.882 4 C -0.164 4.164 5 C -0.174 4.174 6 C 0.058 3.942 7 N -0.511 5.511 8 C 0.059 3.941 9 C -0.102 4.102 10 C 0.095 3.905 11 C 0.015 3.985 12 C 0.096 3.904 13 N -0.598 5.598 14 C 0.126 3.874 15 C 0.032 3.968 16 C -0.546 4.546 17 H 0.064 0.936 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.968 3.032 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.260 1.260 24 C 0.472 3.528 25 O -0.592 6.592 26 C 0.058 3.942 27 O -0.355 6.355 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.056 0.944 49 H -0.027 1.027 50 H 0.000 1.000 51 H 0.264 0.736 52 H 0.151 0.849 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.675 -11.858 -7.367 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.309 6.309 3 C 0.078 3.922 4 C -0.222 4.222 5 C -0.231 4.231 6 C -0.070 4.070 7 N -0.235 5.235 8 C -0.068 4.068 9 C -0.139 4.139 10 C 0.055 3.945 11 C -0.114 4.114 12 C -0.026 4.026 13 N -0.329 5.329 14 C 0.004 3.996 15 C -0.006 4.006 16 C -0.584 4.584 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.792 3.208 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.185 1.185 24 C 0.260 3.740 25 O -0.473 6.473 26 C -0.021 4.021 27 O -0.273 6.273 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.075 0.925 49 H -0.008 1.008 50 H 0.018 0.982 51 H 0.073 0.927 52 H 0.169 0.831 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.266 -11.591 -7.151 25.253 hybrid contribution 1.163 1.067 -0.394 1.627 sum -20.103 -10.524 -7.545 23.913 Atomic orbital electron populations 1.22901 0.80593 1.03397 1.00703 1.88025 1.20665 1.27159 1.95081 1.21410 0.91583 0.83776 0.95411 1.22241 1.01210 1.00562 0.98142 1.22353 1.02672 1.00911 0.97208 1.22342 0.94086 1.00134 0.90431 1.64878 1.03306 1.21919 1.33403 1.23247 0.98713 0.87035 0.97838 1.22600 0.88216 1.02127 1.00996 1.22350 0.94285 0.88685 0.89172 1.23386 0.91081 0.97398 0.99514 1.22280 0.79272 1.03221 0.97829 1.47778 1.12506 1.56986 1.15641 1.21523 0.93513 0.92875 0.91679 1.19102 0.95652 0.91136 0.94733 1.21497 1.26040 0.92402 1.18475 0.91783 1.25979 0.97406 0.98413 0.97770 1.70100 1.42486 1.06587 1.37792 0.85456 0.78955 0.77013 0.79350 1.19628 1.20725 1.18457 1.21603 0.88872 0.79082 0.84401 1.90713 1.19082 1.57852 1.79695 1.22818 0.84500 1.01846 0.92904 1.88098 1.35576 1.38396 1.65234 0.93243 0.93381 0.88830 0.92255 0.91531 0.91531 0.91946 0.90738 0.91146 0.89970 0.94289 0.93524 0.88010 0.87892 0.87657 0.91984 0.93024 0.89450 0.88411 0.89355 0.92514 1.00826 0.98161 0.92724 0.83115 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.21 113.37 1.16 1.39 16 2 O -0.39 -6.68 6.99 -148.98 -1.04 -7.72 16 3 C 0.12 2.05 0.74 -10.79 -0.01 2.04 16 4 C -0.16 -2.85 8.03 71.98 0.58 -2.27 16 5 C -0.17 -2.47 8.06 71.98 0.58 -1.89 16 6 C 0.06 1.26 4.18 86.30 0.36 1.62 16 7 N -0.51 -12.05 4.39 -883.25 -3.88 -15.93 16 8 C 0.06 1.15 4.63 86.68 0.40 1.55 16 9 C -0.10 -1.87 6.32 31.67 0.20 -1.67 16 10 C 0.10 2.37 0.96 -10.43 -0.01 2.36 16 11 C 0.01 0.41 5.39 86.26 0.47 0.87 16 12 C 0.10 2.74 4.99 86.25 0.43 3.17 16 13 N -0.60 -22.45 2.80 -825.58 -2.32 -24.77 16 14 C 0.13 5.61 5.26 86.38 0.45 6.07 16 15 C 0.03 1.75 5.29 29.85 0.16 1.91 16 16 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 17 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 18 C 0.00 0.15 5.46 84.66 0.46 0.62 16 19 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 20 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 24 C 0.47 18.21 7.43 87.68 0.65 18.86 16 25 O -0.59 -28.41 16.34 -3.04 -0.05 -28.46 16 26 C 0.06 1.62 6.42 71.11 0.46 2.08 16 27 O -0.35 -9.07 10.34 -148.98 -1.54 -10.61 16 28 H 0.05 0.52 6.42 -2.39 -0.02 0.51 16 29 H 0.05 0.48 6.56 -2.39 -0.02 0.47 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 0.93 6.54 -2.39 -0.02 0.91 16 33 H 0.07 1.33 6.94 -2.39 -0.02 1.31 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.86 6.89 -2.39 -0.02 0.85 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.04 0.87 7.99 -2.39 -0.02 0.85 16 39 H 0.05 0.99 7.62 -2.39 -0.02 0.97 16 40 H 0.10 1.86 6.57 -2.39 -0.02 1.85 16 41 H 0.10 1.63 8.06 -2.39 -0.02 1.61 16 42 H 0.11 1.69 7.85 -2.39 -0.02 1.68 16 43 H 0.06 2.17 7.61 -2.39 -0.02 2.15 16 44 H 0.05 1.43 5.73 -2.39 -0.01 1.42 16 45 H 0.09 2.62 7.98 -2.39 -0.02 2.60 16 46 H 0.10 2.30 8.11 -2.38 -0.02 2.28 16 47 H 0.09 3.47 8.04 -2.39 -0.02 3.45 16 48 H 0.06 2.74 7.22 -2.39 -0.02 2.73 16 49 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 50 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 51 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 52 H 0.15 3.48 8.14 -2.38 -0.02 3.46 16 53 H 0.10 2.50 6.53 -2.39 -0.02 2.49 16 Total: -1.00 -74.54 401.35 0.94 -73.60 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.88 Total: 19.26 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 6.57 Total: 5.01 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -5.91 Total: -98.16 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -2.63 Total: -46.79 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -74.54 0.94 -73.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273808173.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.676 kcal (2) G-P(sol) polarization free energy of solvation -74.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds