Wall clock time and date at job start Sat Apr 11 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47192 * 305.00392 * 4 3 2 6 6 O 1.42899 * 109.46767 * 65.00094 * 4 3 2 7 7 C 1.53001 * 109.47049 * 185.00237 * 4 3 2 8 8 N 1.46898 * 109.46911 * 180.02562 * 7 4 3 9 9 C 1.48585 * 111.00315 * 52.58684 * 8 7 4 10 10 C 1.55038 * 103.28738 * 159.44009 * 9 8 7 11 11 C 1.54110 * 102.81618 * 322.99448 * 10 9 8 12 12 C 1.48032 * 110.99960 * 169.99817 * 8 7 4 13 13 C 1.52435 * 110.13348 * 140.90798 * 11 10 9 14 14 N 1.46207 * 109.93395 * 169.32493 * 13 11 10 15 15 C 1.46500 * 118.77821 * 162.42124 * 14 13 11 16 16 C 1.53005 * 109.47197 * 89.99827 * 15 14 13 17 17 C 1.50699 * 109.47150 * 180.02562 * 16 15 14 18 18 H 1.08009 * 119.99617 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00356 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99540 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00464 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46933 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46972 * 119.99728 * 21 19 17 24 24 H 1.48499 * 109.46946 * 239.99886 * 21 19 17 25 25 C 1.33845 * 122.44443 * 342.39288 * 14 13 11 26 26 O 1.21277 * 118.69167 * 182.42167 * 25 14 13 27 27 C 1.50296 * 122.61202 * 2.41032 * 25 14 13 28 28 O 1.42574 * 110.07332 * 262.49274 * 11 10 9 29 29 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 31 31 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 33 33 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 34 34 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 35 35 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 36 36 H 0.96706 * 113.99899 * 60.00514 * 6 4 3 37 37 H 1.08998 * 109.47250 * 300.00119 * 7 4 3 38 38 H 1.08998 * 109.47252 * 60.00195 * 7 4 3 39 39 H 1.08998 * 110.65301 * 277.89582 * 9 8 7 40 40 H 1.09002 * 110.65009 * 40.99379 * 9 8 7 41 41 H 1.09007 * 110.74175 * 204.66485 * 10 9 8 42 42 H 1.08999 * 110.74349 * 81.33019 * 10 9 8 43 43 H 1.08998 * 109.97699 * 333.59390 * 12 8 7 44 44 H 1.09007 * 109.97479 * 94.83711 * 12 8 7 45 45 H 1.09005 * 109.39471 * 289.46448 * 13 11 10 46 46 H 1.09005 * 109.39547 * 49.27620 * 13 11 10 47 47 H 1.08992 * 109.47281 * 209.99822 * 15 14 13 48 48 H 1.09003 * 109.47251 * 329.99661 * 15 14 13 49 49 H 1.09003 * 109.46812 * 299.99729 * 16 15 14 50 50 H 1.08997 * 109.46865 * 60.00126 * 16 15 14 51 51 H 0.97006 * 119.99612 * 180.02562 * 20 19 17 52 52 H 1.08998 * 109.40484 * 103.74177 * 27 25 14 53 53 H 1.09003 * 109.40078 * 223.56766 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8529 0.8409 6 8 4.0457 0.8734 -1.2220 7 6 4.0800 2.8796 0.1251 8 7 5.5490 2.8796 0.1239 9 6 6.0806 2.1365 -1.0478 10 6 7.5271 2.6770 -1.1863 11 6 7.3723 4.1657 -0.8193 12 6 6.0794 4.2564 0.0034 13 6 8.5645 4.6283 0.0103 14 7 8.5456 6.0844 0.1415 15 6 9.3482 6.7079 1.1966 16 6 10.7452 7.0212 0.6569 17 6 11.5710 7.6621 1.7424 18 1 11.1424 7.8288 2.7197 19 6 12.8736 8.0356 1.4880 20 7 13.3955 7.8320 0.2981 21 14 13.8975 8.8293 2.8338 22 1 13.0843 8.9458 4.0709 23 1 15.0939 7.9923 3.1042 24 1 14.3280 10.1814 2.3958 25 6 7.8226 6.8688 -0.6668 26 8 7.8916 8.0714 -0.5256 27 6 6.9289 6.3186 -1.7427 28 8 7.2641 4.9528 -2.0031 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.7600 1.3480 -2.0147 37 1 3.7163 3.4692 -0.7164 38 1 3.7171 3.3137 1.0567 39 1 6.0877 1.0642 -0.8521 40 1 5.4989 2.3613 -1.9418 41 1 7.8840 2.5669 -2.2103 42 1 8.1955 2.1745 -0.4872 43 1 5.3558 4.8907 -0.5086 44 1 6.2943 4.6605 0.9927 45 1 8.5142 4.1750 1.0004 46 1 9.4881 4.3225 -0.4813 47 1 8.8683 7.6314 1.5204 48 1 9.4301 6.0252 2.0423 49 1 11.2251 6.0977 0.3331 50 1 10.6632 7.7040 -0.1888 51 1 14.3121 8.0945 0.1193 52 1 5.8904 6.3806 -1.4175 53 1 7.0583 6.9021 -2.6543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274637897.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:13 Heat of formation + Delta-G solvation = -151.596982 kcal Electronic energy + Delta-G solvation = -31089.156839 eV Core-core repulsion = 26959.620842 eV Total energy + Delta-G solvation = -4129.535997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.27303 -40.39951 -39.09822 -37.21130 -37.02159 -35.15992 -34.98623 -33.35353 -32.08849 -30.57709 -29.89811 -28.92295 -27.51779 -26.35155 -25.67217 -23.61514 -23.15690 -22.18956 -21.88711 -21.73834 -19.51079 -18.88276 -18.69860 -17.76353 -17.45680 -17.26239 -16.92615 -16.73474 -16.45793 -16.16488 -15.83444 -15.61176 -15.28937 -15.21748 -14.77306 -14.66765 -14.48520 -14.34323 -14.24785 -14.16765 -13.73576 -13.40905 -13.30144 -13.15615 -12.90366 -12.87144 -12.72429 -12.62138 -12.46828 -12.34813 -12.10634 -12.08985 -11.99072 -11.93645 -11.73230 -11.58230 -11.50472 -11.48098 -11.31348 -10.62157 -10.48598 -10.43269 -9.72835 -9.40588 -8.24889 -6.37871 1.37452 1.39385 1.42340 1.52836 1.82585 2.38509 2.49897 2.91204 3.08519 3.18740 3.40031 3.52802 3.56748 3.72901 3.82443 3.99789 4.10564 4.13218 4.19109 4.27105 4.29915 4.30882 4.36084 4.42895 4.45980 4.54885 4.59972 4.66989 4.67754 4.71489 4.75210 4.79269 4.88099 4.95934 4.96916 5.02080 5.12776 5.14831 5.17231 5.26924 5.28332 5.41041 5.43915 5.50272 5.52841 5.68357 5.77494 5.92532 6.04301 6.13460 6.39252 6.77260 6.86484 7.01461 7.31856 8.87627 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.002097 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.767597 B =13348.212534 C =13533.148332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.143 4.143 4 C 0.117 3.883 5 H 0.096 0.904 6 O -0.565 6.565 7 C 0.014 3.986 8 N -0.516 5.516 9 C 0.061 3.939 10 C -0.113 4.113 11 C 0.094 3.906 12 C 0.018 3.982 13 C 0.095 3.905 14 N -0.598 5.598 15 C 0.128 3.872 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.066 0.934 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.973 3.027 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.281 1.281 25 C 0.470 3.530 26 O -0.591 6.591 27 C 0.059 3.941 28 O -0.363 6.363 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.381 0.619 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.090 0.910 49 H -0.004 1.004 50 H -0.026 1.026 51 H 0.264 0.736 52 H 0.114 0.886 53 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.128 -18.449 -3.006 32.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.182 4.182 4 C 0.058 3.942 5 H 0.114 0.886 6 O -0.372 6.372 7 C -0.115 4.115 8 N -0.240 5.240 9 C -0.066 4.066 10 C -0.151 4.151 11 C 0.053 3.947 12 C -0.110 4.110 13 C -0.027 4.027 14 N -0.329 5.329 15 C 0.006 3.994 16 C -0.012 4.012 17 C -0.582 4.582 18 H 0.085 0.915 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.796 3.204 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.207 1.207 25 C 0.259 3.741 26 O -0.473 6.473 27 C -0.020 4.020 28 O -0.281 6.281 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.231 0.769 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.124 0.876 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.108 0.892 49 H 0.015 0.985 50 H -0.008 1.008 51 H 0.073 0.927 52 H 0.132 0.868 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.509 -18.586 -2.314 31.646 hybrid contribution 0.507 1.830 -0.427 1.946 sum -25.002 -16.756 -2.741 30.222 Atomic orbital electron populations 1.21785 0.95606 1.01786 1.01875 1.21417 0.95795 0.96307 1.02105 1.22220 0.94771 0.97802 1.03361 1.21837 0.92658 0.91935 0.87798 0.88649 1.86685 1.76256 1.58203 1.16087 1.23083 0.87584 0.98468 1.02317 1.64886 1.08270 1.09486 1.41394 1.23365 0.91956 0.99791 0.91515 1.22670 0.99682 0.88938 1.03777 1.22396 0.93299 0.93919 0.85043 1.23429 0.95228 0.92172 1.00211 1.22291 0.99350 0.78605 1.02480 1.47790 1.44764 1.07803 1.32591 1.21526 0.91008 0.97721 0.89111 1.19155 0.91974 0.94699 0.95364 1.21572 0.97770 1.40370 0.98472 0.91534 1.26051 0.99398 0.96255 0.98221 1.70138 1.15292 1.48644 1.23227 0.85289 0.78325 0.77834 0.78909 1.18217 1.19841 1.20707 1.21684 0.81639 0.86946 0.83850 1.90723 1.67595 1.16829 1.72116 1.22829 0.97989 0.83102 0.98043 1.88114 1.90889 1.18958 1.30134 0.92673 0.92625 0.92692 0.91959 0.92467 0.90986 0.90601 0.76934 0.93669 0.89604 0.87782 0.92636 0.89003 0.88347 0.92146 0.90322 0.87645 0.91606 0.92362 0.89223 0.98526 1.00806 0.92716 0.86821 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.53 16 2 C -0.12 -1.08 5.83 30.60 0.18 -0.90 16 3 C -0.14 -1.12 4.89 30.60 0.15 -0.97 16 4 C 0.12 1.19 3.06 30.59 0.09 1.28 16 5 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 6 O -0.56 -6.00 9.14 -148.98 -1.36 -7.36 16 7 C 0.01 0.17 4.88 86.30 0.42 0.59 16 8 N -0.52 -8.44 5.40 -883.28 -4.77 -13.21 16 9 C 0.06 0.91 4.66 86.67 0.40 1.31 16 10 C -0.11 -2.01 6.32 31.67 0.20 -1.81 16 11 C 0.09 2.12 0.96 -10.43 -0.01 2.11 16 12 C 0.02 0.35 5.39 86.26 0.46 0.82 16 13 C 0.10 2.73 5.03 86.25 0.43 3.16 16 14 N -0.60 -22.35 2.80 -825.55 -2.31 -24.66 16 15 C 0.13 5.70 5.22 86.38 0.45 6.15 16 16 C 0.03 1.47 5.29 29.85 0.16 1.63 16 17 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 18 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 19 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 20 N -0.93 -58.91 13.29 21.45 0.28 -58.62 16 21 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 22 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 C 0.47 17.82 7.42 87.68 0.65 18.48 16 26 O -0.59 -28.17 16.38 -3.02 -0.05 -28.22 16 27 C 0.06 1.56 6.42 71.11 0.46 2.02 16 28 O -0.36 -9.19 10.34 -148.98 -1.54 -10.73 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.65 7.82 -2.39 -0.02 0.63 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.38 2.14 8.33 -74.05 -0.62 1.52 16 37 H 0.05 0.50 7.81 -2.39 -0.02 0.48 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.59 6.85 -2.39 -0.02 1.58 16 40 H 0.06 0.75 6.78 -2.39 -0.02 0.73 16 41 H 0.09 1.62 8.06 -2.38 -0.02 1.60 16 42 H 0.10 1.66 7.85 -2.39 -0.02 1.64 16 43 H 0.06 1.11 5.62 -2.39 -0.01 1.10 16 44 H 0.08 1.75 7.62 -2.38 -0.02 1.73 16 45 H 0.11 2.64 7.86 -2.38 -0.02 2.62 16 46 H 0.07 2.05 8.12 -2.38 -0.02 2.03 16 47 H 0.06 2.77 7.30 -2.39 -0.02 2.76 16 48 H 0.09 3.50 7.94 -2.39 -0.02 3.48 16 49 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 50 H -0.03 -1.73 8.14 -2.39 -0.02 -1.75 16 51 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 52 H 0.11 2.31 6.53 -2.39 -0.02 2.29 16 53 H 0.14 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -76.94 408.19 -2.00 -78.94 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.27 Total: 14.57 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 5.46 Total: 1.85 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -6.80 Total: -96.50 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -2.95 Total: -46.32 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -76.94 -2.00 -78.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274637897.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.657 kcal (2) G-P(sol) polarization free energy of solvation -76.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds