Wall clock time and date at job start Sat Apr 11 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47428 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47469 * 54.99329 * 4 3 2 6 6 O 1.42903 * 109.46802 * 294.99535 * 4 3 2 7 7 C 1.52997 * 109.47567 * 174.99750 * 4 3 2 8 8 N 1.46903 * 109.47410 * 184.99733 * 7 4 3 9 9 C 1.48574 * 110.99904 * 52.58785 * 8 7 4 10 10 C 1.55042 * 103.28696 * 159.44550 * 9 8 7 11 11 C 1.54116 * 102.80729 * 322.97891 * 10 9 8 12 12 C 1.48031 * 110.99818 * 169.99977 * 8 7 4 13 13 C 1.52443 * 110.10450 * 262.43092 * 11 10 9 14 14 N 1.46200 * 109.94632 * 286.17566 * 13 11 10 15 15 C 1.46496 * 118.77198 * 162.47399 * 14 13 11 16 16 C 1.53003 * 109.47218 * 270.01873 * 15 14 13 17 17 C 1.50695 * 109.47362 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00221 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99918 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00108 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47201 * 89.99668 * 21 19 17 23 23 H 1.48500 * 109.47242 * 209.99685 * 21 19 17 24 24 H 1.48497 * 109.46881 * 329.99705 * 21 19 17 25 25 C 1.33848 * 122.45219 * 342.49198 * 14 13 11 26 26 O 1.21283 * 118.69613 * 182.37976 * 25 14 13 27 27 C 1.50302 * 122.60667 * 2.35601 * 25 14 13 28 28 O 1.42569 * 110.05215 * 140.87088 * 11 10 9 29 29 H 1.09002 * 109.46983 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46934 * 299.99780 * 1 2 3 31 31 H 1.08994 * 109.47145 * 60.00267 * 1 2 3 32 32 H 1.08997 * 109.47350 * 239.99987 * 2 1 3 33 33 H 1.09003 * 109.47317 * 119.99518 * 2 1 3 34 34 H 1.09001 * 109.47527 * 59.99682 * 3 2 1 35 35 H 1.09008 * 109.47121 * 300.00007 * 3 2 1 36 36 H 0.96697 * 114.00482 * 300.00041 * 6 4 3 37 37 H 1.09000 * 109.46977 * 65.00056 * 7 4 3 38 38 H 1.09002 * 109.47165 * 305.00115 * 7 4 3 39 39 H 1.09004 * 110.65753 * 40.99452 * 9 8 7 40 40 H 1.09003 * 110.79766 * 277.95960 * 9 8 7 41 41 H 1.09004 * 110.74515 * 204.64896 * 10 9 8 42 42 H 1.09001 * 110.74442 * 81.30863 * 10 9 8 43 43 H 1.09003 * 109.98188 * 94.89132 * 12 8 7 44 44 H 1.08999 * 109.98305 * 333.60226 * 12 8 7 45 45 H 1.08995 * 109.39454 * 46.33978 * 13 11 10 46 46 H 1.09003 * 109.39416 * 166.05062 * 13 11 10 47 47 H 1.09001 * 109.47366 * 30.01909 * 15 14 13 48 48 H 1.09001 * 109.47253 * 150.02457 * 15 14 13 49 49 H 1.09001 * 109.46981 * 300.00271 * 16 15 14 50 50 H 1.09007 * 109.46906 * 59.99904 * 16 15 14 51 51 H 0.96994 * 120.00456 * 180.02562 * 20 19 17 52 52 H 1.08998 * 109.39728 * 223.46228 * 27 25 14 53 53 H 1.08995 * 109.39999 * 103.71923 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9331 0.8532 -0.8426 6 8 4.0468 0.8731 1.2202 7 6 4.0799 2.8796 -0.1264 8 7 5.5439 2.8709 -0.2474 9 6 5.9826 1.9628 -1.3384 10 6 7.4098 2.4690 -1.6711 11 6 7.2762 3.9961 -1.5126 12 6 6.0543 4.2126 -0.6089 13 6 7.0542 4.6467 -2.8733 14 7 8.3013 4.6451 -3.6363 15 6 8.2421 4.8563 -5.0847 16 6 8.0954 3.5071 -5.7913 17 6 8.0350 3.7243 -7.2813 18 1 8.0948 4.7245 -7.6841 19 6 7.9024 2.6460 -8.1302 20 7 7.8291 1.4279 -7.6397 21 14 7.8269 2.9152 -9.9772 22 1 9.2004 2.8731 -10.5402 23 1 7.0038 1.8474 -10.5998 24 1 7.2164 4.2390 -10.2599 25 6 9.4952 4.4576 -3.0608 26 8 10.4901 4.5130 -3.7522 27 6 9.6517 4.1817 -1.5916 28 8 8.4485 4.5284 -0.9001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.7618 1.3474 2.0132 37 1 3.7919 3.4461 0.7591 38 1 3.6449 3.3433 -1.0118 39 1 5.3287 2.0590 -2.2052 40 1 6.0120 0.9292 -0.9934 41 1 7.6829 2.2093 -2.6939 42 1 8.1360 2.0694 -0.9632 43 1 6.3476 4.7543 0.2904 44 1 5.2876 4.7703 -1.1466 45 1 6.2939 4.0899 -3.4209 46 1 6.7176 5.6739 -2.7327 47 1 7.3864 5.4873 -5.3252 48 1 9.1581 5.3436 -5.4187 49 1 8.9511 2.8762 -5.5507 50 1 7.1793 3.0198 -5.4573 51 1 7.7362 0.6693 -8.2369 52 1 10.4785 4.7731 -1.1983 53 1 9.8626 3.1228 -1.4426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274637899.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:20 Heat of formation + Delta-G solvation = -156.401491 kcal Electronic energy + Delta-G solvation = -31328.507864 eV Core-core repulsion = 27198.763527 eV Total energy + Delta-G solvation = -4129.744336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.27026 -40.33391 -39.03912 -37.47834 -37.02445 -35.15031 -34.95264 -33.13623 -31.96229 -30.90454 -30.17665 -28.68058 -27.42662 -26.37965 -25.82032 -23.64898 -23.48533 -22.15654 -21.71064 -21.69055 -19.44307 -18.94776 -18.70988 -17.78147 -17.35936 -17.20335 -17.02128 -16.86213 -16.46846 -16.07798 -15.82218 -15.57632 -15.42197 -15.23432 -14.84672 -14.70970 -14.57110 -14.31190 -14.25952 -14.17222 -13.80992 -13.46298 -13.31882 -13.12145 -12.89572 -12.89298 -12.63348 -12.61737 -12.52586 -12.36180 -12.31885 -12.14437 -12.08093 -11.94335 -11.86603 -11.58594 -11.50709 -11.46537 -11.30078 -10.66455 -10.62478 -10.43298 -9.74071 -9.41050 -8.26061 -6.38463 1.36843 1.39363 1.42575 1.50261 1.83334 2.37030 2.42722 2.82526 3.07568 3.20930 3.41953 3.49231 3.59640 3.67196 3.76293 4.06055 4.10226 4.10793 4.13606 4.16752 4.27149 4.31968 4.34483 4.37261 4.40916 4.50534 4.54554 4.64262 4.65164 4.66872 4.73733 4.76994 4.79337 4.85529 4.92184 4.95216 4.97009 5.01242 5.11513 5.13428 5.27264 5.39596 5.40920 5.48227 5.50941 5.72577 5.76376 5.80886 6.00591 6.12620 6.37095 6.75745 7.00817 7.01167 7.31104 8.85875 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.003089 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.538141 B = 9063.453216 C =11538.137461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.144 4.144 4 C 0.109 3.891 5 H 0.080 0.920 6 O -0.566 6.566 7 C 0.013 3.987 8 N -0.506 5.506 9 C 0.045 3.955 10 C -0.152 4.152 11 C 0.097 3.903 12 C 0.061 3.939 13 C 0.094 3.906 14 N -0.599 5.599 15 C 0.126 3.874 16 C 0.031 3.969 17 C -0.545 4.545 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.930 5.930 21 Si 0.968 3.032 22 H -0.277 1.277 23 H -0.279 1.279 24 H -0.258 1.258 25 C 0.472 3.528 26 O -0.591 6.591 27 C 0.061 3.939 28 O -0.353 6.353 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.385 0.615 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.057 0.943 49 H -0.026 1.026 50 H 0.000 1.000 51 H 0.264 0.736 52 H 0.151 0.849 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.245 3.500 21.410 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.182 4.182 4 C 0.050 3.950 5 H 0.098 0.902 6 O -0.373 6.373 7 C -0.115 4.115 8 N -0.230 5.230 9 C -0.082 4.082 10 C -0.190 4.190 11 C 0.057 3.943 12 C -0.067 4.067 13 C -0.029 4.029 14 N -0.330 5.330 15 C 0.004 3.996 16 C -0.007 4.007 17 C -0.583 4.583 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.792 3.208 22 H -0.203 1.203 23 H -0.204 1.204 24 H -0.182 1.182 25 C 0.261 3.739 26 O -0.473 6.473 27 C -0.018 4.018 28 O -0.271 6.271 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.234 0.766 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.075 0.925 49 H -0.008 1.008 50 H 0.018 0.982 51 H 0.073 0.927 52 H 0.169 0.831 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.328 2.901 21.304 25.297 hybrid contribution -0.229 0.045 -2.095 2.108 sum -13.557 2.946 19.209 23.695 Atomic orbital electron populations 1.21774 0.95226 1.01810 1.02079 1.21441 0.96147 0.96632 1.01767 1.22243 0.94581 0.97620 1.03731 1.21943 0.92910 0.92366 0.87802 0.90233 1.86586 1.77486 1.57236 1.16004 1.23173 0.86931 0.98327 1.03025 1.64921 1.11451 1.05482 1.41195 1.23092 0.93766 0.98539 0.92847 1.23089 0.99414 0.94975 1.01517 1.22308 0.87965 0.92586 0.91472 1.22736 0.92751 0.91993 0.99252 1.22296 0.86096 1.03065 0.91446 1.47740 1.06791 1.69643 1.08831 1.21529 1.01718 0.98498 0.77901 1.19110 0.94339 0.92452 0.94765 1.21519 1.50683 0.93720 0.92384 0.91768 1.25981 0.94423 0.94727 1.04443 1.70102 1.50724 0.99154 1.37019 0.85403 0.78232 0.78530 0.78623 1.20301 1.20390 1.18177 1.21673 0.82956 0.76469 0.92787 1.90716 1.38108 1.53141 1.65311 1.22806 0.89731 1.04211 0.85031 1.88062 1.13303 1.74963 1.50772 0.92817 0.92001 0.92760 0.93321 0.91917 0.89847 0.90773 0.76608 0.88090 0.92863 0.93536 0.89565 0.92797 0.89239 0.87456 0.90238 0.89842 0.88426 0.89379 0.92454 1.00789 0.98187 0.92695 0.83125 0.88286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.01 16 2 C -0.12 -1.65 5.83 30.59 0.18 -1.47 16 3 C -0.14 -1.60 4.89 30.59 0.15 -1.45 16 4 C 0.11 1.60 2.69 30.59 0.08 1.68 16 5 H 0.08 1.50 6.52 -2.38 -0.02 1.48 16 6 O -0.57 -9.31 12.82 -148.98 -1.91 -11.22 16 7 C 0.01 0.18 4.66 86.30 0.40 0.58 16 8 N -0.51 -9.34 5.35 -883.29 -4.73 -14.07 16 9 C 0.05 1.03 5.09 86.68 0.44 1.47 16 10 C -0.15 -3.99 4.98 31.67 0.16 -3.83 16 11 C 0.10 2.30 0.98 -10.43 -0.01 2.29 16 12 C 0.06 1.07 6.17 86.26 0.53 1.60 16 13 C 0.09 2.53 4.97 86.25 0.43 2.96 16 14 N -0.60 -21.97 2.69 -825.55 -2.22 -24.19 16 15 C 0.13 5.48 5.26 86.38 0.45 5.94 16 16 C 0.03 1.70 5.29 29.85 0.16 1.86 16 17 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 18 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 19 C 0.00 0.15 5.46 84.65 0.46 0.61 16 20 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 21 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 C 0.47 17.94 7.41 87.68 0.65 18.59 16 26 O -0.59 -28.13 16.34 -3.04 -0.05 -28.18 16 27 C 0.06 1.67 6.43 71.11 0.46 2.12 16 28 O -0.35 -8.81 10.28 -148.98 -1.53 -10.34 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.92 7.82 -2.39 -0.02 0.90 16 34 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.39 3.53 9.05 -74.06 -0.67 2.86 16 37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 0.68 7.82 -2.39 -0.02 0.66 16 39 H 0.05 1.08 8.00 -2.39 -0.02 1.06 16 40 H 0.09 2.04 7.58 -2.39 -0.02 2.02 16 41 H 0.05 1.79 7.73 -2.38 -0.02 1.77 16 42 H 0.09 2.29 7.28 -2.39 -0.02 2.27 16 43 H 0.11 1.78 7.96 -2.39 -0.02 1.76 16 44 H 0.08 1.12 7.10 -2.39 -0.02 1.11 16 45 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 46 H 0.10 2.16 8.10 -2.39 -0.02 2.14 16 47 H 0.09 3.38 8.04 -2.39 -0.02 3.36 16 48 H 0.06 2.73 7.22 -2.39 -0.02 2.72 16 49 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 50 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 51 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 52 H 0.15 3.40 8.14 -2.39 -0.02 3.38 16 53 H 0.10 2.53 6.99 -2.39 -0.02 2.52 16 Total: -1.00 -75.70 413.50 -2.43 -78.13 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.21 Total: 19.41 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.49 Total: 0.73 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -6.66 Total: -95.15 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -3.49 Total: -49.74 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -75.70 -2.43 -78.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274637899.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.275 kcal (2) G-P(sol) polarization free energy of solvation -75.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds