Wall clock time and date at job start Sat Apr 11 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46992 * 2 1 4 4 C 1.52996 * 109.47365 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47368 * 304.99965 * 4 3 2 6 6 O 1.42903 * 109.47126 * 64.99620 * 4 3 2 7 7 C 1.52993 * 109.47473 * 184.99753 * 4 3 2 8 8 N 1.46906 * 109.47378 * 179.97438 * 7 4 3 9 9 C 1.47908 * 111.00090 * 290.80494 * 8 7 4 10 10 C 1.55025 * 104.86889 * 213.78226 * 9 8 7 11 11 C 1.54452 * 101.59816 * 36.39344 * 10 9 8 12 12 C 1.47614 * 111.00056 * 169.99885 * 8 7 4 13 13 C 1.52191 * 110.32244 * 206.33103 * 11 10 9 14 14 N 1.46239 * 109.96262 * 284.84961 * 13 11 10 15 15 C 1.46500 * 118.80136 * 162.72310 * 14 13 11 16 16 C 1.52995 * 109.47231 * 270.02288 * 15 14 13 17 17 C 1.50695 * 109.47524 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99524 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00223 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99792 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00149 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47248 * 90.00225 * 21 19 17 23 23 H 1.48504 * 109.47213 * 210.00253 * 21 19 17 24 24 H 1.48503 * 109.47019 * 330.00419 * 21 19 17 25 25 C 1.33844 * 122.40170 * 342.74420 * 14 13 11 26 26 O 1.21284 * 118.64777 * 182.61838 * 25 14 13 27 27 C 1.50280 * 122.70184 * 2.59515 * 25 14 13 28 28 O 1.42293 * 110.30589 * 83.80868 * 11 10 9 29 29 H 1.09006 * 109.46758 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47460 * 300.00210 * 1 2 3 31 31 H 1.09003 * 109.47204 * 60.00767 * 1 2 3 32 32 H 1.09000 * 109.47315 * 240.00114 * 2 1 3 33 33 H 1.08998 * 109.47295 * 119.99971 * 2 1 3 34 34 H 1.08993 * 109.47190 * 59.99624 * 3 2 1 35 35 H 1.09007 * 109.46967 * 299.99846 * 3 2 1 36 36 H 0.96698 * 113.99903 * 60.00531 * 6 4 3 37 37 H 1.09004 * 109.46862 * 59.99962 * 7 4 3 38 38 H 1.09000 * 109.47250 * 299.99985 * 7 4 3 39 39 H 1.09003 * 110.35874 * 332.63040 * 9 8 7 40 40 H 1.09001 * 110.35747 * 94.93086 * 9 8 7 41 41 H 1.08999 * 110.99813 * 278.31964 * 10 9 8 42 42 H 1.08990 * 111.03264 * 154.48554 * 10 9 8 43 43 H 1.08997 * 109.91859 * 243.06167 * 12 8 7 44 44 H 1.09005 * 109.91647 * 4.16162 * 12 8 7 45 45 H 1.09001 * 109.39312 * 45.00201 * 13 11 10 46 46 H 1.09004 * 109.38646 * 164.70178 * 13 11 10 47 47 H 1.09001 * 109.46637 * 30.02272 * 15 14 13 48 48 H 1.08992 * 109.47270 * 150.01913 * 15 14 13 49 49 H 1.09003 * 109.46946 * 299.99987 * 16 15 14 50 50 H 1.09008 * 109.47019 * 59.99438 * 16 15 14 51 51 H 0.96998 * 119.99711 * 179.97438 * 20 19 17 52 52 H 1.08999 * 109.39980 * 223.24006 * 27 25 14 53 53 H 1.08994 * 109.32255 * 103.46517 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 8 4.0468 0.8730 -1.2201 7 6 4.0798 2.8796 0.1263 8 7 5.5489 2.8796 0.1275 9 6 6.0779 2.2789 1.3713 10 6 7.3829 3.0617 1.6674 11 6 6.9993 4.4875 1.2140 12 6 6.0780 4.2524 0.0074 13 6 8.2421 5.2635 0.8021 14 7 8.9916 5.6726 1.9893 15 6 10.3887 6.0852 1.8345 16 6 11.3001 4.8652 1.9815 17 6 12.7372 5.2894 1.8217 18 1 12.9766 6.3257 1.6335 19 6 13.7464 4.3547 1.9145 20 7 15.0007 4.7251 1.7755 21 14 13.3325 2.5624 2.2392 22 1 13.1367 1.8575 0.9469 23 1 14.4458 1.9248 2.9871 24 1 12.0857 2.4799 3.0418 25 6 8.4479 5.6834 3.2123 26 8 9.1169 6.0809 4.1426 27 6 7.0424 5.2237 3.4801 28 8 6.3062 5.1669 2.2546 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8901 36 1 3.7618 1.3473 -2.0131 37 1 3.7160 3.3140 1.0575 38 1 3.7168 3.4689 -0.7158 39 1 5.3659 2.4065 2.1867 40 1 6.2959 1.2219 1.2190 41 1 8.2132 2.6743 1.0770 42 1 7.6190 3.0404 2.7312 43 1 6.6452 4.3521 -0.9180 44 1 5.2568 4.9691 0.0184 45 1 8.8723 4.6317 0.1762 46 1 7.9459 6.1482 0.2384 47 1 10.5297 6.5273 0.8482 48 1 10.6378 6.8192 2.6007 49 1 11.1590 4.4230 2.9678 50 1 11.0509 4.1310 1.2152 51 1 15.7107 4.0675 1.8412 52 1 6.5568 5.9219 4.1618 53 1 7.0672 4.2330 3.9337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274637900.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:25 Heat of formation + Delta-G solvation = -126.491880 kcal Electronic energy + Delta-G solvation = -31220.964604 eV Core-core repulsion = 27092.517246 eV Total energy + Delta-G solvation = -4128.447358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.23915 -39.32254 -38.18150 -36.51837 -35.61387 -34.45690 -33.10688 -32.21298 -30.61309 -30.10569 -29.52193 -27.66431 -26.56657 -24.97272 -24.63628 -22.70296 -21.81541 -21.45933 -21.03929 -20.41090 -18.55163 -17.80375 -17.10134 -16.83805 -16.48767 -16.28492 -16.03775 -15.72292 -15.42038 -15.06078 -14.68575 -14.58051 -14.25100 -14.15522 -13.80572 -13.69388 -13.55754 -13.18090 -13.03888 -12.93351 -12.84057 -12.66872 -12.38708 -12.23541 -12.00699 -11.89714 -11.67948 -11.62023 -11.44453 -11.39838 -11.16226 -11.08568 -11.02208 -10.94697 -10.57204 -10.24639 -10.10834 -10.05128 -9.86324 -9.36178 -9.13677 -8.60823 -8.56720 -8.29828 -6.07323 -4.06181 2.73727 3.07308 3.28349 3.34282 3.36622 3.40943 3.52081 4.12605 4.15856 4.28938 4.38772 4.42938 4.43344 4.57932 4.61321 4.68129 4.77907 4.88507 4.98816 5.02402 5.04259 5.10134 5.15490 5.19443 5.26618 5.30119 5.33680 5.37593 5.43751 5.44206 5.48881 5.54029 5.60538 5.65405 5.68618 5.77909 5.84800 5.87653 5.91995 5.94844 6.31244 6.51028 6.54620 6.61189 6.70063 6.78667 7.16958 7.31111 7.44980 7.68245 7.75560 8.34218 8.47839 8.95822 9.54399 11.05794 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015702 B = 0.002534 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.775539 B =11045.167963 C =12020.396264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.152 4.152 4 C 0.112 3.888 5 H 0.095 0.905 6 O -0.546 6.546 7 C 0.017 3.983 8 N -0.513 5.513 9 C 0.048 3.952 10 C -0.158 4.158 11 C 0.080 3.920 12 C 0.062 3.938 13 C 0.099 3.901 14 N -0.599 5.599 15 C 0.120 3.880 16 C -0.020 4.020 17 C -0.520 4.520 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.900 5.900 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.267 1.267 25 C 0.480 3.520 26 O -0.538 6.538 27 C 0.049 3.951 28 O -0.361 6.361 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.370 0.630 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.020 0.980 50 H 0.010 0.990 51 H 0.264 0.736 52 H 0.127 0.873 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.224 -6.134 -5.454 31.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.190 4.190 4 C 0.053 3.947 5 H 0.113 0.887 6 O -0.351 6.351 7 C -0.112 4.112 8 N -0.236 5.236 9 C -0.079 4.079 10 C -0.196 4.196 11 C 0.039 3.961 12 C -0.066 4.066 13 C -0.025 4.025 14 N -0.331 5.331 15 C 0.000 4.000 16 C -0.058 4.058 17 C -0.558 4.558 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.539 5.539 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.192 1.192 25 C 0.267 3.733 26 O -0.416 6.416 27 C -0.031 4.031 28 O -0.279 6.279 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.090 0.910 45 H 0.111 0.889 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.101 0.899 49 H 0.038 0.962 50 H 0.029 0.971 51 H 0.074 0.926 52 H 0.145 0.855 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -29.451 -6.624 -5.015 30.600 hybrid contribution -0.347 -0.129 0.591 0.697 sum -29.797 -6.753 -4.425 30.872 Atomic orbital electron populations 1.21790 0.95999 1.01641 1.01645 1.21445 0.95449 0.96250 1.02670 1.22320 0.96032 0.97921 1.02745 1.21900 0.91609 0.92771 0.88464 0.88711 1.86618 1.77080 1.56269 1.15091 1.23097 0.88556 0.97974 1.01547 1.63724 1.06950 1.16758 1.36189 1.23065 0.95022 0.99728 0.90132 1.23341 0.98943 0.94305 1.03049 1.22495 0.92360 0.91760 0.89443 1.22713 0.97957 0.89948 0.95982 1.21881 0.92203 0.99669 0.88725 1.47743 1.14082 1.65125 1.06189 1.21747 0.76896 0.99482 1.01901 1.19829 0.95512 0.93749 0.96715 1.20945 0.88447 0.96880 1.49550 0.90816 1.24977 0.94876 0.98888 0.94482 1.69908 0.99112 1.34553 1.50307 0.86775 0.78359 0.85409 0.78739 1.20217 1.21262 1.19176 1.20712 0.89750 0.79482 0.83395 1.90764 1.62239 1.46777 1.41800 1.22856 0.89296 1.03186 0.87717 1.87981 1.42838 1.76951 1.20175 0.92748 0.92891 0.92840 0.91239 0.92113 0.91205 0.91551 0.78303 0.93509 0.90472 0.93319 0.89647 0.88716 0.90020 0.88231 0.91028 0.88898 0.90829 0.91044 0.89886 0.96209 0.97148 0.92649 0.85479 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.71 5.83 -26.73 -0.16 -0.87 16 3 C -0.15 -0.82 4.89 -26.73 -0.13 -0.95 16 4 C 0.11 0.78 2.96 -26.74 -0.08 0.70 16 5 H 0.10 0.76 7.49 -51.93 -0.39 0.37 16 6 O -0.55 -4.53 12.74 -35.23 -0.45 -4.98 16 7 C 0.02 0.12 4.23 -3.82 -0.02 0.11 16 8 N -0.51 -4.74 5.04 -231.42 -1.17 -5.90 16 9 C 0.05 0.47 5.79 -2.20 -0.01 0.46 16 10 C -0.16 -1.83 5.80 -24.90 -0.14 -1.97 16 11 C 0.08 0.90 0.83 -89.94 -0.07 0.83 16 12 C 0.06 0.57 6.22 -3.11 -0.02 0.55 16 13 C 0.10 1.28 5.21 -4.60 -0.02 1.26 16 14 N -0.60 -10.20 2.81 -174.84 -0.49 -10.69 16 15 C 0.12 2.46 5.27 -4.04 -0.02 2.44 16 16 C -0.02 -0.48 4.36 -27.89 -0.12 -0.60 16 17 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 18 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 21 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 25 C 0.48 8.39 7.39 -11.60 -0.09 8.30 16 26 O -0.54 -11.71 16.33 5.55 0.09 -11.61 16 27 C 0.05 0.62 6.36 35.80 0.23 0.85 16 28 O -0.36 -4.34 10.38 -35.23 -0.37 -4.70 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.46 7.82 -51.93 -0.41 0.05 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.37 1.93 9.05 45.56 0.41 2.34 16 37 H 0.05 0.35 7.85 -51.93 -0.41 -0.05 16 38 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 39 H 0.05 0.46 7.62 -51.93 -0.40 0.06 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.18 7.83 -51.93 -0.41 0.77 16 42 H 0.08 1.00 5.83 -51.93 -0.30 0.70 16 43 H 0.10 0.84 7.81 -51.93 -0.41 0.43 16 44 H 0.07 0.61 7.48 -51.93 -0.39 0.23 16 45 H 0.09 1.19 7.85 -51.93 -0.41 0.78 16 46 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16 47 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 48 H 0.08 1.86 7.22 -51.93 -0.37 1.49 16 49 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 50 H 0.01 0.24 7.57 -51.92 -0.39 -0.15 16 51 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 52 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 53 H 0.09 1.00 6.53 -51.93 -0.34 0.66 16 LS Contribution 410.44 15.07 6.19 6.19 Total: -1.00 -34.62 410.44 -9.61 -44.23 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.80 Total: -0.19 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.72 Total: -2.63 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.88 Total: -43.73 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.72 Total: -21.30 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.62 -9.61 -44.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274637900.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.261 kcal (2) G-P(sol) polarization free energy of solvation -34.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds