Wall clock time and date at job start Sat Apr 11 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.53003 * 109.47203 * 120.00269 * 2 1 3 5 5 H 1.08997 * 109.47679 * 300.02166 * 4 2 1 6 6 C 1.53094 * 109.47724 * 180.02562 * 4 2 1 7 7 C 1.53178 * 109.16041 * 182.39790 * 6 4 2 8 8 H 1.08998 * 109.54788 * 176.93556 * 7 6 4 9 9 C 1.53001 * 109.54206 * 297.11292 * 7 6 4 10 10 C 1.50702 * 109.47125 * 185.00129 * 9 7 6 11 11 O 1.21275 * 119.99952 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99914 * 179.97438 * 10 9 7 13 13 C 1.46496 * 120.00247 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47482 * 180.02562 * 13 12 10 15 15 O 1.42899 * 113.28012 * 51.94173 * 14 13 12 16 16 C 1.53500 * 114.20404 * 185.00304 * 14 13 12 17 17 N 1.47061 * 87.98486 * 87.71933 * 16 14 13 18 18 C 1.36943 * 136.05729 * 207.07634 * 17 16 14 19 19 H 1.08004 * 119.99922 * 6.79161 * 18 17 16 20 20 C 1.38808 * 119.99969 * 186.78396 * 18 17 16 21 21 N 1.31618 * 119.99632 * 172.28195 * 20 18 17 22 22 Si 1.86798 * 120.00152 * 352.28246 * 20 18 17 23 23 H 1.48497 * 109.47240 * 55.35716 * 22 20 18 24 24 H 1.48498 * 109.47102 * 295.35486 * 22 20 18 25 25 H 1.48504 * 109.46987 * 175.35538 * 22 20 18 26 26 C 1.47062 * 87.88530 * 27.33997 * 17 16 14 27 27 C 1.53182 * 109.03988 * 56.97777 * 7 6 4 28 28 C 1.53098 * 109.15982 * 303.02067 * 27 7 6 29 29 O 1.42899 * 109.48941 * 60.05473 * 4 2 1 30 30 H 1.09010 * 109.46956 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47541 * 299.99601 * 1 2 3 32 32 H 1.09000 * 109.47169 * 60.00084 * 1 2 3 33 33 H 1.09006 * 109.47181 * 239.99861 * 2 1 3 34 34 H 1.08996 * 109.47359 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47257 * 300.00492 * 3 2 1 36 36 H 1.08998 * 109.46522 * 59.99774 * 3 2 1 37 37 H 1.08990 * 109.52423 * 62.49152 * 6 4 2 38 38 H 1.09000 * 109.51960 * 302.29901 * 6 4 2 39 39 H 1.09003 * 109.47231 * 64.99860 * 9 7 6 40 40 H 1.08998 * 109.46984 * 304.99913 * 9 7 6 41 41 H 0.96999 * 120.00232 * 0.02562 * 12 10 9 42 42 H 1.09003 * 109.46850 * 60.00299 * 13 12 10 43 43 H 1.09006 * 109.47625 * 300.00837 * 13 12 10 44 44 H 0.96704 * 113.99708 * 313.06161 * 15 14 13 45 45 H 1.08998 * 113.46994 * 332.93300 * 16 14 13 46 46 H 1.09006 * 113.51688 * 202.51067 * 16 14 13 47 47 H 0.97003 * 120.00461 * 4.86280 * 21 20 18 48 48 H 1.09004 * 113.47112 * 87.44379 * 26 17 16 49 49 H 1.09001 * 113.46858 * 217.87714 * 26 17 16 50 50 H 1.08999 * 109.52277 * 62.92537 * 27 7 6 51 51 H 1.08998 * 109.52225 * 183.11724 * 27 7 6 52 52 H 1.08997 * 109.48007 * 297.62526 * 28 27 7 53 53 H 1.08998 * 109.47536 * 177.58771 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6764 -0.2078 2.1393 6 6 3.5709 -0.7208 1.2497 7 6 4.0736 -1.4962 2.4714 8 1 5.1622 -1.5464 2.4489 9 6 3.6202 -0.7875 3.7493 10 6 4.2172 -1.4807 4.9469 11 8 4.9342 -2.4466 4.7934 12 7 3.9543 -1.0271 6.1885 13 6 4.5341 -1.7012 7.3527 14 6 4.0809 -0.9924 8.6307 15 8 2.6642 -0.8238 8.7109 16 6 4.7236 -1.5368 9.9140 17 7 5.8324 -0.5957 9.6960 18 6 7.1616 -0.5456 10.0216 19 1 7.6371 -1.3986 10.4829 20 6 7.8978 0.6015 9.7587 21 7 9.1310 0.7088 10.2061 22 14 7.1384 1.9926 8.7700 23 1 5.8689 2.4198 9.4110 24 1 6.8621 1.5243 7.3882 25 1 8.0806 3.1396 8.7250 26 6 4.8841 0.2711 8.9804 27 6 3.4927 -2.9132 2.4377 28 6 1.9647 -2.8288 2.3913 29 8 1.5649 -2.0690 1.2489 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9562 0.8900 37 1 3.9349 0.3055 1.2946 38 1 3.9356 -1.1981 0.3401 39 1 2.5327 -0.8189 3.8160 40 1 3.9530 0.2502 3.7269 41 1 3.3805 -0.2547 6.3113 42 1 5.6217 -1.6704 7.2860 43 1 4.2008 -2.7387 7.3753 44 1 2.2625 -0.4808 7.9009 45 1 5.0211 -2.5828 9.8405 46 1 4.1452 -1.3255 10.8135 47 1 9.5499 -0.0402 10.6581 48 1 4.3476 0.9597 9.6332 49 1 5.3185 0.7654 8.1114 50 1 3.8557 -3.4347 1.5521 51 1 3.8006 -3.4544 3.3322 52 1 1.5999 -2.3432 3.2963 53 1 1.5472 -3.8334 2.3240 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278923173.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:31 Heat of formation + Delta-G solvation = -112.737681 kcal Electronic energy + Delta-G solvation = -31290.157997 eV Core-core repulsion = 27162.307066 eV Total energy + Delta-G solvation = -4127.850931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.69359 -41.04081 -39.91105 -36.91476 -36.32006 -35.54394 -35.25009 -34.45458 -31.04018 -30.78220 -29.57355 -27.98138 -27.32998 -27.17176 -25.29499 -24.51516 -23.66351 -21.91993 -21.13035 -21.01817 -20.09289 -19.55210 -18.74896 -17.89126 -17.47324 -17.36129 -17.07894 -16.76708 -16.50866 -15.97952 -15.80147 -15.50620 -15.20817 -15.13708 -15.00199 -14.82234 -14.58890 -14.48372 -14.06201 -13.83997 -13.69193 -13.59830 -13.43697 -13.26356 -12.93747 -12.76545 -12.61061 -12.53617 -12.34639 -12.23081 -12.12485 -12.04315 -11.88099 -11.81818 -11.66735 -11.40352 -11.33296 -11.06731 -10.98272 -10.82285 -10.62523 -10.26280 -10.11685 -9.28780 -8.71407 -5.54310 1.32279 1.44667 1.60941 1.63804 2.02630 2.50383 2.73853 2.86351 3.04662 3.20284 3.29271 3.56898 3.65682 3.73006 3.77402 3.94426 4.02436 4.18657 4.20498 4.22157 4.28516 4.36844 4.42711 4.44355 4.51418 4.58414 4.61738 4.62098 4.68136 4.69857 4.77571 4.78691 4.86271 4.88144 4.96354 5.05031 5.08590 5.09850 5.11150 5.15054 5.17895 5.26391 5.31117 5.34113 5.38315 5.50593 5.53300 5.88933 6.38579 6.44758 6.63220 6.71569 7.21929 7.25003 8.17029 8.84287 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.002628 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.495863 B =10651.823335 C =11141.048413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.147 4.147 4 C 0.091 3.909 5 H 0.071 0.929 6 C -0.139 4.139 7 C -0.073 4.073 8 H 0.061 0.939 9 C -0.134 4.134 10 C 0.510 3.490 11 O -0.576 6.576 12 N -0.719 5.719 13 C 0.134 3.866 14 C 0.106 3.894 15 O -0.539 6.539 16 C 0.133 3.867 17 N -0.651 5.651 18 C -0.291 4.291 19 H 0.052 0.948 20 C -0.086 4.086 21 N -0.968 5.968 22 Si 1.110 2.890 23 H -0.255 1.255 24 H -0.272 1.272 25 H -0.304 1.304 26 C 0.073 3.927 27 C -0.153 4.153 28 C 0.063 3.937 29 O -0.392 6.392 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.414 0.586 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.390 0.610 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.247 0.753 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.060 0.940 51 H 0.070 0.930 52 H 0.059 0.941 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.714 0.784 -22.161 31.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.204 4.204 4 C 0.033 3.967 5 H 0.089 0.911 6 C -0.177 4.177 7 C -0.093 4.093 8 H 0.080 0.920 9 C -0.174 4.174 10 C 0.298 3.702 11 O -0.455 6.455 12 N -0.374 5.374 13 C 0.010 3.990 14 C 0.063 3.937 15 O -0.346 6.346 16 C 0.006 3.994 17 N -0.382 5.382 18 C -0.418 4.418 19 H 0.070 0.930 20 C -0.277 4.277 21 N -0.613 5.613 22 Si 0.935 3.065 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.233 1.233 26 C -0.052 4.052 27 C -0.191 4.191 28 C -0.013 4.013 29 O -0.312 6.312 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.252 0.748 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.241 0.759 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.056 0.944 48 H 0.081 0.919 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.089 0.911 52 H 0.077 0.923 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.738 1.299 -22.298 31.168 hybrid contribution 0.670 -1.535 1.047 1.975 sum -21.068 -0.236 -21.251 29.925 Atomic orbital electron populations 1.21750 0.94529 1.01670 1.02010 1.21109 0.96586 0.96312 0.96662 1.21877 1.01568 0.94155 1.02837 1.22315 0.92573 0.82749 0.99017 0.91091 1.22283 0.96383 1.01713 0.97321 1.20894 1.00235 0.94706 0.93414 0.92001 1.21932 1.03411 1.01583 0.90427 1.21337 0.80146 0.83812 0.84875 1.90689 1.39163 1.29304 1.86374 1.45830 1.52039 1.34272 1.05246 1.21193 0.98286 0.96520 0.83039 1.22884 0.80641 0.95524 0.94649 1.86581 1.17933 1.87901 1.42137 1.22485 0.86799 0.94928 0.95138 1.45655 1.03289 1.22990 1.66223 1.19924 0.83117 1.01136 1.37608 0.93030 1.27168 0.96534 1.02344 1.01678 1.71025 1.15547 1.32240 1.42449 0.83269 0.74770 0.72986 0.75479 1.17936 1.19890 1.23253 1.23657 0.90414 0.95271 0.95814 1.22239 0.96751 0.97407 1.02700 1.22610 0.93433 0.96620 0.88656 1.87900 1.74741 1.24173 1.44344 0.93218 0.92319 0.92183 0.91512 0.91860 0.91706 0.91680 0.88798 0.91472 0.86217 0.86100 0.74814 0.92896 0.90331 0.75942 0.92495 0.92039 0.94422 0.91858 0.92869 0.92081 0.91138 0.92281 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.05 71.98 0.65 -0.92 16 2 C -0.09 -0.99 2.72 -10.79 -0.03 -1.02 16 3 C -0.15 -1.19 8.84 71.98 0.64 -0.56 16 4 C 0.09 1.15 1.95 30.63 0.06 1.21 16 5 H 0.07 0.73 6.72 -2.39 -0.02 0.71 16 6 C -0.14 -1.85 4.49 30.69 0.14 -1.71 16 7 C -0.07 -1.28 2.33 -10.67 -0.02 -1.31 16 8 H 0.06 1.37 7.95 -2.39 -0.02 1.35 16 9 C -0.13 -1.94 4.60 29.85 0.14 -1.80 16 10 C 0.51 11.97 7.53 87.66 0.66 12.63 16 11 O -0.58 -19.08 14.01 -3.01 -0.04 -19.12 16 12 N -0.72 -15.40 5.32 -463.07 -2.46 -17.86 16 13 C 0.13 4.00 5.33 86.38 0.46 4.46 16 14 C 0.11 3.21 1.73 -10.37 -0.02 3.19 16 15 O -0.54 -12.53 13.55 -148.98 -2.02 -14.55 16 16 C 0.13 5.03 8.10 83.17 0.67 5.70 16 17 N -0.65 -30.97 3.48 -738.47 -2.57 -33.54 16 18 C -0.29 -16.96 11.08 84.03 0.93 -16.03 16 19 H 0.05 3.27 8.05 -2.91 -0.02 3.24 16 20 C -0.09 -5.13 5.50 84.86 0.47 -4.66 16 21 N -0.97 -62.96 13.70 21.65 0.30 -62.66 16 22 Si 1.11 52.39 25.13 68.60 1.72 54.11 16 23 H -0.25 -10.58 6.13 99.48 0.61 -9.97 16 24 H -0.27 -11.71 6.64 99.48 0.66 -11.05 16 25 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 26 C 0.07 2.77 5.14 83.26 0.43 3.20 16 27 C -0.15 -2.98 5.41 30.69 0.17 -2.82 16 28 C 0.06 1.01 6.57 72.01 0.47 1.48 16 29 O -0.39 -6.73 9.74 -148.98 -1.45 -8.18 16 30 H 0.05 0.68 7.69 -2.38 -0.02 0.67 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.06 0.49 6.48 -2.39 -0.02 0.47 16 35 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 0.44 8.14 -2.39 -0.02 0.43 16 37 H 0.09 0.94 6.57 -2.39 -0.02 0.93 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.12 1.13 5.03 -2.39 -0.01 1.12 16 40 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.41 5.50 7.24 -92.71 -0.67 4.82 16 42 H 0.05 2.07 7.95 -2.39 -0.02 2.05 16 43 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 44 H 0.39 5.07 7.50 -74.05 -0.56 4.51 16 45 H 0.06 2.11 8.12 -2.39 -0.02 2.09 16 46 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 47 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 48 H 0.06 2.33 7.73 -2.38 -0.02 2.31 16 49 H 0.05 2.01 4.64 -2.39 -0.01 1.99 16 50 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.07 1.72 5.96 -2.39 -0.01 1.71 16 52 H 0.06 0.80 6.49 -2.39 -0.02 0.78 16 53 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -78.37 397.58 -1.20 -79.58 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.49 Total: 21.16 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 5.81 Total: 1.06 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -4.74 Total: -114.06 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -3.51 Total: -41.85 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 1.72 Total: 54.11 kcal Total: -78.37 -1.20 -79.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278923173.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.159 kcal (2) G-P(sol) polarization free energy of solvation -78.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds