Wall clock time and date at job start Sat Apr 11 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47437 * 2 1 4 4 C 1.53000 * 109.47375 * 184.76982 * 3 2 1 5 5 H 1.08995 * 109.47202 * 55.63091 * 4 3 2 6 6 O 1.42901 * 109.46807 * 295.63628 * 4 3 2 7 7 C 1.42901 * 114.00106 * 144.26389 * 6 4 3 8 8 C 1.53002 * 109.47449 * 183.76366 * 7 6 4 9 9 C 1.50694 * 109.47549 * 175.63928 * 4 3 2 10 10 O 1.21278 * 120.00600 * 119.99835 * 9 4 3 11 11 N 1.34785 * 119.99596 * 299.99613 * 9 4 3 12 12 C 1.46497 * 119.99853 * 179.97438 * 11 9 4 13 13 C 1.53004 * 109.47126 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.52267 * 307.79971 * 13 12 11 15 15 C 1.55060 * 110.58596 * 185.00023 * 13 12 11 16 16 C 1.55026 * 102.13118 * 204.93559 * 15 13 12 17 17 C 1.53321 * 103.78352 * 20.86353 * 16 15 13 18 18 C 1.52656 * 115.55930 * 133.64289 * 17 16 15 19 19 N 1.47220 * 87.77840 * 90.04381 * 18 17 16 20 20 C 1.36938 * 135.96581 * 206.40681 * 19 18 17 21 21 H 1.07996 * 120.00031 * 6.34471 * 20 19 18 22 22 C 1.38812 * 119.99849 * 186.33546 * 20 19 18 23 23 N 1.31626 * 119.99576 * 171.95564 * 22 20 19 24 24 Si 1.86797 * 120.00205 * 351.95207 * 22 20 19 25 25 H 1.48500 * 109.47015 * 175.56764 * 24 22 20 26 26 H 1.48505 * 109.46985 * 55.57085 * 24 22 20 27 27 H 1.48500 * 109.47330 * 295.57001 * 24 22 20 28 28 C 1.47217 * 88.06876 * 26.67213 * 19 18 17 29 29 O 1.42836 * 108.33294 * 1.60606 * 17 16 15 30 30 H 1.09003 * 109.46903 * 59.99856 * 1 2 3 31 31 H 1.08997 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47106 * 300.00137 * 1 2 3 33 33 H 1.08998 * 109.47106 * 239.99863 * 2 1 3 34 34 H 1.09003 * 109.46903 * 120.00144 * 2 1 3 35 35 H 1.09001 * 109.47516 * 64.77213 * 3 2 1 36 36 H 1.09001 * 109.47062 * 304.76807 * 3 2 1 37 37 H 1.09002 * 109.46943 * 303.76360 * 7 6 4 38 38 H 1.08998 * 109.47232 * 63.76123 * 7 6 4 39 39 H 1.08998 * 109.47102 * 59.99678 * 8 7 6 40 40 H 1.08991 * 109.47420 * 179.97438 * 8 7 6 41 41 H 1.09002 * 109.47043 * 299.99933 * 8 7 6 42 42 H 0.96993 * 119.99776 * 0.02562 * 11 9 4 43 43 H 1.09008 * 109.47163 * 60.00397 * 12 11 9 44 44 H 1.08991 * 109.47580 * 300.00519 * 12 11 9 45 45 H 1.09007 * 110.86785 * 86.77690 * 15 13 12 46 46 H 1.08995 * 111.05039 * 323.18180 * 15 13 12 47 47 H 1.08995 * 110.56388 * 262.29087 * 16 15 13 48 48 H 1.08994 * 110.68607 * 139.49847 * 16 15 13 49 49 H 1.09003 * 113.50226 * 335.31920 * 18 17 16 50 50 H 1.08995 * 113.55719 * 204.77947 * 18 17 16 51 51 H 0.96994 * 120.00342 * 5.00183 * 23 22 20 52 52 H 1.09000 * 113.50314 * 88.05971 * 28 19 18 53 53 H 1.09002 * 113.50276 * 218.60641 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5654 1.4440 -0.1199 5 1 3.8604 0.8881 -1.0098 6 8 4.1347 0.8282 1.0370 7 6 5.3109 0.0623 0.7685 8 6 5.7777 -0.6234 2.0541 9 6 4.0593 2.8636 -0.2277 10 8 4.8237 3.3046 0.6042 11 7 3.6516 3.6433 -1.2488 12 6 4.1314 5.0235 -1.3533 13 6 3.5223 5.6827 -2.5925 14 1 3.6914 5.0662 -3.4754 15 6 4.1094 7.1030 -2.7987 16 6 2.9856 7.8065 -3.6022 17 6 1.7405 6.9631 -3.3040 18 6 0.4835 7.7497 -2.9412 19 7 0.1533 7.7730 -4.3757 20 6 -0.5631 8.5912 -5.2079 21 1 -0.9635 9.5227 -4.8359 22 6 -0.7745 8.2234 -6.5296 23 7 -1.5918 8.9257 -7.2854 24 14 0.1009 6.7318 -7.2355 25 1 -0.3729 6.4901 -8.6220 26 1 -0.1941 5.5420 -6.3971 27 1 1.5653 6.9775 -7.2485 28 6 0.9249 6.5278 -4.5226 29 8 2.1094 5.9217 -2.3986 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.7483 1.9310 0.9296 36 1 1.6087 1.9803 -0.8442 37 1 5.0886 -0.6925 0.0141 38 1 6.0979 0.7215 0.4019 39 1 4.9908 -1.2826 2.4206 40 1 6.6745 -1.2079 1.8491 41 1 6.0000 0.1314 2.8084 42 1 3.0401 3.2907 -1.9140 43 1 5.2181 5.0250 -1.4385 44 1 3.8360 5.5793 -0.4635 45 1 5.0325 7.0614 -3.3769 46 1 4.2738 7.6011 -1.8433 47 1 3.2111 7.7924 -4.6685 48 1 2.8469 8.8302 -3.2547 49 1 0.6925 8.7362 -2.5273 50 1 -0.2273 7.1823 -2.3407 51 1 -1.9899 9.7408 -6.9421 52 1 0.3343 5.6278 -4.3515 53 1 1.5065 6.4829 -5.4434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327358860.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:39 Heat of formation + Delta-G solvation = -103.359692 kcal Electronic energy + Delta-G solvation = -30676.115848 eV Core-core repulsion = 26548.671576 eV Total energy + Delta-G solvation = -4127.444271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -41.68920 -41.07930 -38.89529 -38.26826 -36.08210 -35.49705 -34.48345 -33.15679 -32.43384 -31.18289 -29.96152 -28.58161 -27.22515 -25.90072 -24.55062 -23.76622 -23.15826 -22.39608 -22.09992 -21.35236 -20.77829 -19.51983 -18.59367 -18.21216 -17.76556 -17.46925 -16.74535 -16.49526 -16.34995 -16.24758 -15.89037 -15.71396 -15.33198 -15.22955 -15.09814 -14.77116 -14.51362 -14.22352 -14.09550 -13.66745 -13.55535 -13.45569 -13.20083 -13.09875 -12.96407 -12.73940 -12.71290 -12.67286 -12.40880 -12.32340 -12.17581 -12.03593 -12.02015 -11.92633 -11.73022 -11.50482 -11.44483 -11.34848 -11.31455 -11.02356 -10.33648 -10.26528 -10.15235 -9.24809 -8.68623 -5.50751 1.36910 1.47819 1.50963 1.67573 2.01646 2.52945 2.56026 2.73817 2.96437 3.23599 3.40365 3.56536 3.60392 3.65929 3.84659 3.89336 3.92456 4.10315 4.16708 4.19712 4.27429 4.37385 4.39327 4.40818 4.47652 4.48599 4.58910 4.63119 4.64325 4.68366 4.71352 4.81558 4.82342 4.86987 4.91243 4.93127 4.98524 5.01203 5.04350 5.09865 5.12500 5.23009 5.24576 5.27361 5.34962 5.37106 5.48573 5.91194 6.00928 6.08871 6.50667 6.66120 7.17674 7.28074 8.21834 8.87164 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.002490 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.769455 B =11243.490665 C =12302.663106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.113 4.113 4 C 0.079 3.921 5 H 0.118 0.882 6 O -0.377 6.377 7 C 0.049 3.951 8 C -0.148 4.148 9 C 0.489 3.511 10 O -0.575 6.575 11 N -0.714 5.714 12 C 0.133 3.867 13 C 0.061 3.939 14 H 0.096 0.904 15 C -0.134 4.134 16 C -0.117 4.117 17 C 0.087 3.913 18 C 0.125 3.875 19 N -0.649 5.649 20 C -0.290 4.290 21 H 0.051 0.949 22 C -0.084 4.084 23 N -0.968 5.968 24 Si 1.108 2.892 25 H -0.304 1.304 26 H -0.261 1.261 27 H -0.266 1.266 28 C 0.084 3.916 29 O -0.361 6.361 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.415 0.585 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.110 0.890 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.055 0.945 50 H 0.047 0.953 51 H 0.246 0.754 52 H 0.053 0.947 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.847 -21.259 14.113 30.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.150 4.150 4 C 0.018 3.982 5 H 0.135 0.865 6 O -0.295 6.295 7 C -0.027 4.027 8 C -0.205 4.205 9 C 0.275 3.725 10 O -0.454 6.454 11 N -0.368 5.368 12 C 0.009 3.991 13 C 0.004 3.996 14 H 0.114 0.886 15 C -0.172 4.172 16 C -0.155 4.155 17 C 0.045 3.955 18 C -0.001 4.001 19 N -0.379 5.379 20 C -0.417 4.417 21 H 0.069 0.931 22 C -0.276 4.276 23 N -0.613 5.613 24 Si 0.933 3.067 25 H -0.233 1.233 26 H -0.186 1.186 27 H -0.192 1.192 28 C -0.041 4.041 29 O -0.280 6.280 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.252 0.748 43 H 0.112 0.888 44 H 0.079 0.921 45 H 0.128 0.872 46 H 0.107 0.893 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.073 0.927 50 H 0.065 0.935 51 H 0.055 0.945 52 H 0.071 0.929 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.190 -21.820 13.602 30.930 hybrid contribution -1.039 1.857 0.737 2.252 sum 16.151 -19.963 14.339 29.411 Atomic orbital electron populations 1.21789 0.95462 1.02169 1.01834 1.21422 0.95975 0.94837 1.02892 1.21756 0.90194 0.99591 1.03501 1.22179 0.95422 0.89087 0.91519 0.86492 1.87993 1.43044 1.66697 1.31730 1.22772 0.86583 0.93875 0.99502 1.21733 1.02130 1.00295 0.96334 1.21876 0.80466 0.89601 0.80521 1.90685 1.37219 1.75786 1.41755 1.45975 1.49319 1.13048 1.28429 1.21367 0.99182 0.81452 0.97053 1.23596 0.80951 0.97305 0.97742 0.88615 1.23141 0.98697 0.93575 1.01786 1.22411 0.92090 0.99477 1.01526 1.23172 0.94603 0.88262 0.89427 1.22544 0.93365 0.97959 0.86194 1.45721 1.61692 1.25280 1.05213 1.19930 1.28698 1.00471 0.92618 0.93095 1.27137 0.99133 1.07749 0.93600 1.71031 1.31837 1.17691 1.40711 0.83287 0.75371 0.73398 0.74596 1.23263 1.18593 1.19221 1.23368 0.92883 0.90215 0.97666 1.88765 1.24880 1.54765 1.59552 0.92430 0.91873 0.93366 0.90447 0.91864 0.92321 0.88791 0.90872 0.94256 0.91528 0.89061 0.93335 0.74836 0.88792 0.92089 0.87182 0.89299 0.90561 0.90343 0.92710 0.93515 0.94451 0.92929 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.11 -1.38 5.77 30.59 0.18 -1.20 16 3 C -0.11 -1.66 4.86 30.59 0.15 -1.51 16 4 C 0.08 1.29 2.56 29.85 0.08 1.37 16 5 H 0.12 1.18 7.67 -2.39 -0.02 1.16 16 6 O -0.38 -7.62 9.11 -129.94 -1.18 -8.81 16 7 C 0.05 0.73 6.50 71.98 0.47 1.19 16 8 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 9 C 0.49 10.72 7.23 87.65 0.63 11.36 16 10 O -0.58 -17.85 16.50 16.02 0.26 -17.58 16 11 N -0.71 -12.71 5.42 -463.06 -2.51 -15.22 16 12 C 0.13 2.50 5.41 86.38 0.47 2.96 16 13 C 0.06 1.19 3.38 31.30 0.11 1.29 16 14 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 15 C -0.13 -2.45 6.60 31.99 0.21 -2.24 16 16 C -0.12 -3.16 6.46 31.40 0.20 -2.95 16 17 C 0.09 2.79 1.66 -10.81 -0.02 2.78 16 18 C 0.13 4.90 8.20 83.40 0.68 5.59 16 19 N -0.65 -31.27 3.66 -739.10 -2.70 -33.97 16 20 C -0.29 -16.86 11.07 84.03 0.93 -15.93 16 21 H 0.05 3.21 8.05 -2.91 -0.02 3.18 16 22 C -0.08 -5.03 5.50 84.86 0.47 -4.56 16 23 N -0.97 -62.37 13.70 21.65 0.30 -62.07 16 24 Si 1.11 52.21 25.12 68.60 1.72 53.93 16 25 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 26 H -0.26 -11.08 6.11 99.48 0.61 -10.47 16 27 H -0.27 -11.18 6.66 99.48 0.66 -10.52 16 28 C 0.08 3.30 5.22 83.50 0.44 3.74 16 29 O -0.36 -9.88 11.02 -148.98 -1.64 -11.52 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.86 7.93 -2.39 -0.02 0.85 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.17 7.44 -2.39 -0.02 1.16 16 37 H 0.07 0.71 8.01 -2.39 -0.02 0.69 16 38 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.41 5.65 7.84 -92.71 -0.73 4.92 16 43 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.09 1.51 8.05 -2.39 -0.02 1.49 16 47 H 0.08 2.14 7.82 -2.39 -0.02 2.13 16 48 H 0.08 2.19 7.81 -2.39 -0.02 2.17 16 49 H 0.05 2.07 7.91 -2.39 -0.02 2.05 16 50 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.25 15.97 8.73 -92.71 -0.81 15.16 16 52 H 0.05 2.08 7.72 -2.39 -0.02 2.06 16 53 H 0.05 2.13 4.46 -2.39 -0.01 2.12 16 Total: -1.00 -77.94 418.50 0.66 -77.29 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -0.03 Total: 18.44 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 6.44 Total: -0.49 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -4.92 Total: -111.26 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -2.56 Total: -37.91 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 1.72 Total: 53.93 kcal Total: -77.94 0.66 -77.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327358860.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.072 kcal (2) G-P(sol) polarization free energy of solvation -77.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds