Wall clock time and date at job start Sat Apr 11 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47017 * 2 1 4 4 C 1.52999 * 109.46949 * 174.65059 * 3 2 1 5 5 H 1.09007 * 109.47120 * 305.28839 * 4 3 2 6 6 O 1.42899 * 109.47332 * 65.28663 * 4 3 2 7 7 C 1.42897 * 113.99968 * 259.41117 * 6 4 3 8 8 C 1.53003 * 109.46891 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47053 * 185.29017 * 4 3 2 10 10 O 1.21281 * 120.00050 * 244.99598 * 9 4 3 11 11 N 1.34778 * 119.99965 * 64.99752 * 9 4 3 12 12 C 1.46503 * 119.99850 * 180.02562 * 11 9 4 13 13 C 1.53001 * 109.46937 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.82777 * 59.43829 * 13 12 11 15 15 C 1.54475 * 109.82988 * 180.42391 * 13 12 11 16 16 C 1.55504 * 102.38699 * 140.87857 * 15 13 12 17 17 C 1.53880 * 100.75971 * 327.02857 * 16 15 13 18 18 C 1.52380 * 115.67802 * 263.23617 * 17 16 15 19 19 N 1.47280 * 87.70436 * 218.74528 * 18 17 16 20 20 C 1.36931 * 135.93313 * 206.18288 * 19 18 17 21 21 H 1.07997 * 120.00460 * 4.03105 * 20 19 18 22 22 C 1.38822 * 119.99486 * 184.03602 * 20 19 18 23 23 N 1.31618 * 119.99771 * 172.41836 * 22 20 19 24 24 Si 1.86794 * 120.00060 * 352.41460 * 22 20 19 25 25 H 1.48506 * 109.47022 * 176.42704 * 24 22 20 26 26 H 1.48494 * 109.47406 * 296.43045 * 24 22 20 27 27 H 1.48507 * 109.47168 * 56.43018 * 24 22 20 28 28 C 1.47280 * 88.12454 * 26.43102 * 19 18 17 29 29 O 1.42409 * 106.67030 * 34.97641 * 17 16 15 30 30 H 1.08998 * 109.47252 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47401 * 300.00294 * 1 2 3 32 32 H 1.09006 * 109.46910 * 60.00702 * 1 2 3 33 33 H 1.08997 * 109.47401 * 239.99706 * 2 1 3 34 34 H 1.08997 * 109.46879 * 119.99508 * 2 1 3 35 35 H 1.08994 * 109.46926 * 54.64837 * 3 2 1 36 36 H 1.09003 * 109.46697 * 294.64726 * 3 2 1 37 37 H 1.09004 * 109.47383 * 300.00549 * 7 6 4 38 38 H 1.09001 * 109.47302 * 60.01635 * 7 6 4 39 39 H 1.09003 * 109.47182 * 180.02562 * 8 7 6 40 40 H 1.08999 * 109.47434 * 300.00041 * 8 7 6 41 41 H 1.09000 * 109.47365 * 60.00157 * 8 7 6 42 42 H 0.96997 * 119.99899 * 359.97438 * 11 9 4 43 43 H 1.09002 * 109.47140 * 59.99950 * 12 11 9 44 44 H 1.08996 * 109.47230 * 299.99709 * 12 11 9 45 45 H 1.09007 * 110.82090 * 259.09971 * 15 13 12 46 46 H 1.08996 * 110.82519 * 22.45879 * 15 13 12 47 47 H 1.08998 * 111.16069 * 209.15284 * 16 15 13 48 48 H 1.09001 * 111.16457 * 84.90197 * 16 15 13 49 49 H 1.09001 * 113.51502 * 104.04004 * 18 17 16 50 50 H 1.09001 * 113.57581 * 333.46142 * 18 17 16 51 51 H 0.97004 * 120.00006 * 354.95227 * 23 22 20 52 52 H 1.09002 * 113.50728 * 88.27762 * 28 19 18 53 53 H 1.09000 * 113.50941 * 218.84996 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5641 1.4446 0.1345 5 1 3.8514 0.8778 1.0201 6 8 4.1454 0.8443 -1.0247 7 6 4.5520 -0.5124 -0.8346 8 6 5.1573 -1.0500 -2.1329 9 6 4.0549 2.8635 0.2651 10 8 4.7537 3.3455 -0.6010 11 7 3.7172 3.5967 1.3444 12 6 4.1939 4.9762 1.4711 13 6 3.6710 5.5785 2.7767 14 1 4.0223 4.9882 3.6230 15 6 4.1602 7.0373 2.9137 16 6 2.9177 7.7504 3.5187 17 6 1.7792 6.9470 2.8658 18 6 1.1700 7.5640 1.6128 19 7 -0.1424 7.1002 2.0942 20 6 -1.3383 6.7628 1.5190 21 1 -1.4365 6.7523 0.4436 22 6 -2.4247 6.4344 2.3184 23 7 -3.6107 6.2559 1.7762 24 14 -2.2034 6.2456 4.1636 25 1 -3.5209 5.9801 4.7955 26 1 -1.2850 5.1116 4.4386 27 1 -1.6286 7.4951 4.7236 28 6 0.3921 7.1641 3.4652 29 8 2.2357 5.6021 2.7618 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.6005 1.9832 0.8381 36 1 1.7570 1.9279 -0.9341 37 1 5.2963 -0.5607 -0.0397 38 1 3.6870 -1.1159 -0.5597 39 1 5.4671 -2.0850 -1.9881 40 1 4.4133 -1.0017 -2.9280 41 1 6.0224 -0.4465 -2.4077 42 1 3.1580 3.2112 2.0369 43 1 3.8307 5.5649 0.6287 44 1 5.2838 4.9848 1.4774 45 1 5.0109 7.0986 3.5925 46 1 4.4135 7.4542 1.9390 47 1 2.8813 8.7981 3.2204 48 1 2.8969 7.6515 4.6040 49 1 1.4903 7.0804 0.6900 50 1 1.2599 8.6496 1.5734 51 1 -3.7418 6.4251 0.8300 52 1 0.2691 8.1401 3.9347 53 1 0.0579 6.3441 4.1007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327358863.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:19 Heat of formation + Delta-G solvation = -100.822302 kcal Electronic energy + Delta-G solvation = -31350.125863 eV Core-core repulsion = 27222.791621 eV Total energy + Delta-G solvation = -4127.334242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 5.26 seconds Orbital eigenvalues (eV) -41.70833 -41.06966 -39.07155 -38.27662 -35.95494 -35.44476 -34.48620 -33.19878 -32.59323 -31.24547 -30.01479 -28.55433 -27.18256 -26.03593 -24.75862 -23.70606 -22.81303 -22.57071 -22.19844 -21.35647 -20.77995 -19.54496 -18.46681 -18.23896 -17.79174 -17.49214 -17.06982 -16.58785 -16.24023 -16.06702 -15.78188 -15.73363 -15.46571 -15.36740 -15.01804 -14.77884 -14.44267 -14.20988 -14.12323 -13.81680 -13.70976 -13.40424 -13.29600 -13.23471 -12.96815 -12.89673 -12.64320 -12.52580 -12.51521 -12.34903 -12.25143 -12.18955 -12.11826 -11.98048 -11.59716 -11.54887 -11.32095 -11.06563 -11.04361 -11.00480 -10.38829 -10.32548 -10.17530 -9.24235 -8.64975 -5.47059 1.36827 1.44974 1.48727 1.68772 1.85191 2.54620 2.59147 2.88534 2.99262 3.20575 3.42083 3.56442 3.65960 3.73314 3.75483 3.82771 3.85730 4.07196 4.14921 4.17839 4.18993 4.35205 4.37828 4.44413 4.46485 4.51088 4.53628 4.57825 4.60998 4.62289 4.71928 4.80677 4.82221 4.85238 4.88390 4.93192 4.94972 5.01133 5.03296 5.13587 5.14047 5.18928 5.20642 5.26858 5.31567 5.34700 5.36511 5.92398 6.08459 6.23297 6.46743 6.67828 7.12895 7.30944 8.25285 8.87931 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010236 B = 0.003482 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.858501 B = 8040.451811 C =10047.607355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.133 4.133 4 C 0.084 3.916 5 H 0.122 0.878 6 O -0.385 6.385 7 C 0.041 3.959 8 C -0.150 4.150 9 C 0.503 3.497 10 O -0.575 6.575 11 N -0.710 5.710 12 C 0.114 3.886 13 C 0.063 3.937 14 H 0.116 0.884 15 C -0.135 4.135 16 C -0.128 4.128 17 C 0.089 3.911 18 C 0.104 3.896 19 N -0.658 5.658 20 C -0.290 4.290 21 H 0.040 0.960 22 C -0.086 4.086 23 N -0.971 5.971 24 Si 1.113 2.887 25 H -0.304 1.304 26 H -0.276 1.276 27 H -0.252 1.252 28 C 0.096 3.904 29 O -0.363 6.363 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.414 0.586 43 H 0.042 0.958 44 H 0.093 0.907 45 H 0.121 0.879 46 H 0.080 0.920 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.028 0.972 50 H 0.070 0.930 51 H 0.243 0.757 52 H 0.080 0.920 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.628 -10.733 5.971 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.171 4.171 4 C 0.023 3.977 5 H 0.140 0.860 6 O -0.304 6.304 7 C -0.035 4.035 8 C -0.207 4.207 9 C 0.290 3.710 10 O -0.454 6.454 11 N -0.363 5.363 12 C -0.010 4.010 13 C 0.005 3.995 14 H 0.133 0.867 15 C -0.173 4.173 16 C -0.166 4.166 17 C 0.048 3.952 18 C -0.022 4.022 19 N -0.387 5.387 20 C -0.417 4.417 21 H 0.058 0.942 22 C -0.277 4.277 23 N -0.617 5.617 24 Si 0.938 3.062 25 H -0.233 1.233 26 H -0.203 1.203 27 H -0.177 1.177 28 C -0.028 4.028 29 O -0.282 6.282 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.250 0.750 43 H 0.060 0.940 44 H 0.111 0.889 45 H 0.139 0.861 46 H 0.099 0.901 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.047 0.953 50 H 0.087 0.913 51 H 0.052 0.948 52 H 0.097 0.903 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 22.047 -10.937 6.400 25.429 hybrid contribution -0.329 0.545 -2.156 2.248 sum 21.717 -10.392 4.244 24.447 Atomic orbital electron populations 1.21795 0.95878 1.02373 1.01341 1.21545 0.95830 0.94481 1.03243 1.22042 0.92685 0.99783 1.02603 1.21955 0.93577 0.90636 0.91551 0.86050 1.88032 1.80353 1.27974 1.34054 1.22994 0.99378 0.81551 0.99558 1.21766 1.00870 1.01706 0.96400 1.21146 0.79679 0.88963 0.81224 1.90669 1.39621 1.73613 1.41491 1.45832 1.53146 1.14093 1.23268 1.21849 0.99701 0.81593 0.97879 1.23382 0.80490 0.99072 0.96544 0.86682 1.23111 0.99153 0.91602 1.03396 1.23014 0.91276 1.00397 1.01911 1.22834 0.93979 0.83314 0.95104 1.22987 0.84295 0.97891 0.97037 1.46017 1.10119 1.78312 1.04219 1.19956 0.87589 1.42916 0.91242 0.94230 1.27141 0.90816 0.99453 1.10297 1.71021 1.22928 1.54514 1.13206 0.83253 0.74068 0.78304 0.70577 1.23267 1.20279 1.17717 1.23115 0.91012 1.00032 0.88678 1.88333 1.20884 1.25126 1.93816 0.90889 0.93258 0.94138 0.91072 0.89505 0.90373 0.93403 0.92055 0.90928 0.88430 0.92575 0.93011 0.75001 0.93956 0.88876 0.86075 0.90089 0.87946 0.87768 0.95350 0.91258 0.94774 0.90263 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.91 71.98 0.71 -2.63 16 2 C -0.11 -2.13 4.81 30.60 0.15 -1.98 16 3 C -0.13 -3.22 4.89 30.60 0.15 -3.07 16 4 C 0.08 1.94 2.68 29.85 0.08 2.02 16 5 H 0.12 1.87 7.68 -2.38 -0.02 1.85 16 6 O -0.39 -9.99 9.32 -129.99 -1.21 -11.20 16 7 C 0.04 0.68 6.06 71.98 0.44 1.12 16 8 C -0.15 -2.28 10.28 71.98 0.74 -1.54 16 9 C 0.50 14.77 7.18 87.66 0.63 15.40 16 10 O -0.57 -22.04 16.51 15.95 0.26 -21.78 16 11 N -0.71 -17.64 5.37 -463.06 -2.48 -20.12 16 12 C 0.11 2.70 5.23 86.38 0.45 3.15 16 13 C 0.06 1.28 3.62 31.10 0.11 1.39 16 14 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 15 C -0.13 -2.05 6.56 31.96 0.21 -1.84 16 16 C -0.13 -2.43 6.49 31.75 0.21 -2.22 16 17 C 0.09 2.82 1.56 -10.81 -0.02 2.80 16 18 C 0.10 4.09 8.24 83.47 0.69 4.78 16 19 N -0.66 -33.21 3.70 -739.89 -2.74 -35.95 16 20 C -0.29 -17.83 11.07 84.04 0.93 -16.90 16 21 H 0.04 2.68 8.06 -2.91 -0.02 2.66 16 22 C -0.09 -5.35 5.50 84.86 0.47 -4.88 16 23 N -0.97 -65.02 13.70 21.65 0.30 -64.72 16 24 Si 1.11 54.57 25.09 68.60 1.72 56.29 16 25 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 26 H -0.28 -12.68 6.65 99.48 0.66 -12.02 16 27 H -0.25 -10.74 6.20 99.48 0.62 -10.12 16 28 C 0.10 3.81 5.32 83.57 0.44 4.25 16 29 O -0.36 -11.49 10.69 -148.98 -1.59 -13.09 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.07 1.28 6.61 -2.39 -0.02 1.27 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.95 7.76 -2.39 -0.02 1.93 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 0.84 8.12 -2.38 -0.02 0.82 16 38 H 0.07 0.94 5.94 -2.39 -0.01 0.93 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.41 8.81 8.10 -92.71 -0.75 8.06 16 43 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.08 1.27 7.85 -2.39 -0.02 1.25 16 47 H 0.10 1.69 7.93 -2.39 -0.02 1.67 16 48 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 49 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 50 H 0.07 2.42 7.99 -2.39 -0.02 2.41 16 51 H 0.24 16.47 8.73 -92.71 -0.81 15.66 16 52 H 0.08 2.82 7.81 -2.39 -0.02 2.80 16 53 H 0.05 2.03 4.50 -2.39 -0.01 2.02 16 Total: -1.00 -87.42 414.81 0.60 -86.82 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.04 Total: 23.89 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 6.39 Total: -0.14 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -4.93 Total: -120.79 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -2.54 Total: -46.06 kcal Atomic # 14 Polarization: 54.57 SS G_CDS: 1.72 Total: 56.29 kcal Total: -87.42 0.60 -86.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327358863.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.003 kcal (2) G-P(sol) polarization free energy of solvation -87.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.26 seconds