Wall clock time and date at job start Sat Apr 11 2020 06:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47413 * 2 1 4 4 C 1.52992 * 109.47413 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47186 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99835 * 85.05213 * 5 4 3 7 7 C 1.53004 * 109.47188 * 96.06288 * 6 5 4 8 8 C 1.52996 * 109.47121 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47042 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99836 * 265.05170 * 5 4 3 11 11 O 1.21352 * 119.99964 * 5.55410 * 10 5 4 12 12 C 1.49454 * 120.00308 * 185.55439 * 10 5 4 13 13 O 1.21350 * 119.99453 * 355.30333 * 12 10 5 14 14 N 1.34770 * 120.00375 * 175.30506 * 12 10 5 15 15 C 1.47022 * 125.64693 * 359.68773 * 14 12 10 16 16 C 1.54338 * 107.26338 * 178.85468 * 15 14 12 17 17 C 1.55160 * 103.02185 * 338.14058 * 16 15 14 18 18 O 1.42897 * 111.00441 * 277.23828 * 17 16 15 19 19 C 1.50703 * 111.03668 * 153.39752 * 17 16 15 20 20 H 1.08000 * 119.99921 * 6.32877 * 19 17 16 21 21 C 1.37874 * 119.99730 * 186.33195 * 19 17 16 22 22 N 1.31511 * 120.00240 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 119.99976 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46768 * 89.99872 * 23 21 19 25 25 H 1.48498 * 109.47389 * 209.99862 * 23 21 19 26 26 H 1.48497 * 109.47175 * 330.00545 * 23 21 19 27 27 C 1.47430 * 125.64946 * 180.02562 * 14 12 10 28 28 H 1.09003 * 109.47356 * 59.99853 * 1 2 3 29 29 H 1.08996 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47614 * 300.00405 * 1 2 3 31 31 H 1.08999 * 109.47377 * 240.00088 * 2 1 3 32 32 H 1.08998 * 109.46987 * 119.99513 * 2 1 3 33 33 H 1.09000 * 109.47061 * 59.99256 * 3 2 1 34 34 H 1.09007 * 109.46786 * 299.99919 * 3 2 1 35 35 H 1.09000 * 109.47614 * 59.99595 * 4 3 2 36 36 H 1.09007 * 109.47079 * 299.99739 * 4 3 2 37 37 H 1.09003 * 109.46984 * 216.05760 * 6 5 4 38 38 H 1.08996 * 109.47730 * 336.05854 * 6 5 4 39 39 H 1.08991 * 109.47026 * 299.99844 * 7 6 5 40 40 H 1.09006 * 109.47023 * 59.99752 * 7 6 5 41 41 H 1.08991 * 109.47601 * 300.00175 * 8 7 6 42 42 H 1.09006 * 109.46817 * 60.00308 * 8 7 6 43 43 H 1.09000 * 109.47454 * 300.00477 * 9 8 7 44 44 H 1.08996 * 109.47367 * 60.00707 * 9 8 7 45 45 H 1.09006 * 109.47088 * 180.02562 * 9 8 7 46 46 H 1.08997 * 109.88319 * 298.39336 * 15 14 12 47 47 H 1.08993 * 109.88033 * 59.56597 * 15 14 12 48 48 H 1.09001 * 110.84629 * 219.67633 * 16 15 14 49 49 H 1.09001 * 110.51673 * 96.45130 * 16 15 14 50 50 H 0.96698 * 114.00441 * 173.65258 * 18 17 16 51 51 H 0.97002 * 120.00235 * 180.02562 * 22 21 19 52 52 H 1.09001 * 110.36002 * 322.92949 * 27 14 12 53 53 H 1.09001 * 110.36720 * 85.13640 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.1998 3.5512 1.2624 7 6 5.6467 3.4503 1.7498 8 6 5.7946 4.2105 3.0692 9 6 7.2412 4.1090 3.5568 10 6 4.3773 3.4251 -1.1644 11 8 4.1658 2.8604 -2.2175 12 6 4.9917 4.7876 -1.1574 13 8 5.1250 5.3876 -0.1111 14 7 5.3976 5.3497 -2.3131 15 6 5.3023 4.7346 -3.6450 16 6 5.8606 5.7534 -4.6610 17 6 5.7252 7.1050 -3.9112 18 8 4.4025 7.6307 -4.0375 19 6 6.7474 8.0991 -4.3992 20 1 7.3766 7.8567 -5.2428 21 6 6.8792 9.3181 -3.7686 22 7 6.1133 9.6131 -2.7410 23 14 8.1466 10.5501 -4.3730 24 1 7.5323 11.4282 -5.4010 25 1 8.6164 11.3769 -3.2324 26 1 9.2985 9.8246 -4.9661 27 6 6.0172 6.6805 -2.4501 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9564 -0.8901 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 3.9402 4.5988 1.1097 38 1 3.5341 3.1169 2.0083 39 1 5.9064 2.4028 1.9025 40 1 6.3124 3.8847 1.0039 41 1 5.5350 5.2579 2.9162 42 1 5.1288 3.7764 3.8152 43 1 7.5005 3.0614 3.7100 44 1 7.9073 4.5428 2.8110 45 1 7.3465 4.6503 4.4971 46 1 5.8923 3.8186 -3.6734 47 1 4.2605 4.5145 -3.8779 48 1 5.2646 5.7574 -5.5737 49 1 6.9059 5.5384 -4.8826 50 1 4.2417 8.4230 -3.5070 51 1 6.2058 10.4709 -2.2976 52 1 5.5628 7.3840 -1.7525 53 1 7.0919 6.6180 -2.2788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328413516.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:14 Heat of formation + Delta-G solvation = -147.856259 kcal Electronic energy + Delta-G solvation = -31610.678845 eV Core-core repulsion = 27481.305058 eV Total energy + Delta-G solvation = -4129.373787 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 6.26 seconds Orbital eigenvalues (eV) -42.01436 -40.18092 -38.91990 -37.91924 -36.26415 -35.98637 -34.68510 -34.24908 -31.93755 -30.78798 -29.70066 -29.41023 -27.61884 -25.92536 -24.92727 -24.28623 -22.60373 -22.19419 -21.79652 -21.48200 -20.09894 -19.12921 -18.34385 -18.03219 -17.27909 -17.11612 -16.99737 -16.42327 -16.17712 -16.09221 -15.92455 -15.49421 -14.97968 -14.82889 -14.69150 -14.60276 -14.35302 -14.09919 -13.96308 -13.81572 -13.54204 -13.52508 -13.41390 -13.29841 -12.85179 -12.63279 -12.55603 -12.48499 -12.35024 -12.22934 -12.20385 -12.12554 -12.11112 -12.07169 -11.94092 -11.76790 -11.46590 -11.41002 -11.20163 -10.69155 -10.42526 -10.24357 -9.88113 -9.54395 -8.25584 -6.42351 0.37153 1.27270 1.43254 1.45223 1.54443 2.12691 2.33642 2.42036 3.00210 3.14238 3.76356 3.89568 3.92655 4.00321 4.04517 4.06167 4.14665 4.21014 4.26275 4.30665 4.36409 4.37375 4.58435 4.65353 4.67330 4.69372 4.72958 4.79308 4.82502 4.86030 4.96250 4.96549 4.97438 5.04238 5.06679 5.08783 5.17777 5.25568 5.28611 5.32226 5.34869 5.36455 5.42318 5.46195 5.47869 5.54024 5.73706 5.96552 6.04987 6.34637 6.59894 6.67724 6.96358 7.26188 7.34275 8.79976 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012190 B = 0.003144 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.504635 B = 8905.058473 C =10550.008859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.130 4.130 4 C 0.111 3.889 5 N -0.577 5.577 6 C 0.102 3.898 7 C -0.121 4.121 8 C -0.114 4.114 9 C -0.149 4.149 10 C 0.509 3.491 11 O -0.535 6.535 12 C 0.498 3.502 13 O -0.537 6.537 14 N -0.586 5.586 15 C 0.121 3.879 16 C -0.115 4.115 17 C 0.233 3.767 18 O -0.588 6.588 19 C -0.555 4.555 20 H 0.069 0.931 21 C 0.029 3.971 22 N -0.913 5.913 23 Si 0.964 3.036 24 H -0.276 1.276 25 H -0.284 1.284 26 H -0.266 1.266 27 C 0.111 3.889 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.374 0.626 51 H 0.270 0.730 52 H 0.059 0.941 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.678 -17.713 10.979 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.168 4.168 4 C -0.010 4.010 5 N -0.309 5.309 6 C -0.020 4.020 7 C -0.159 4.159 8 C -0.152 4.152 9 C -0.207 4.207 10 C 0.291 3.709 11 O -0.413 6.413 12 C 0.281 3.719 13 O -0.416 6.416 14 N -0.318 5.318 15 C -0.001 4.001 16 C -0.153 4.153 17 C 0.193 3.807 18 O -0.395 6.395 19 C -0.593 4.593 20 H 0.087 0.913 21 C -0.173 4.173 22 N -0.552 5.552 23 Si 0.790 3.210 24 H -0.202 1.202 25 H -0.210 1.210 26 H -0.190 1.190 27 C -0.011 4.011 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.102 0.898 49 H 0.110 0.890 50 H 0.223 0.777 51 H 0.079 0.921 52 H 0.077 0.923 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.850 -18.134 10.764 21.639 hybrid contribution 0.707 1.777 -0.037 1.913 sum -4.142 -16.357 10.728 19.995 Atomic orbital electron populations 1.21766 0.95508 1.02151 1.01607 1.21419 0.96204 0.94874 1.02904 1.21931 0.94481 0.98533 1.01897 1.21861 0.94711 0.79929 1.04508 1.47951 1.62039 1.14977 1.05960 1.22134 0.98005 0.98166 0.83648 1.21846 0.96046 1.00536 0.97478 1.21356 0.97796 0.99983 0.96099 1.21736 0.96055 1.02142 1.00717 1.19983 0.79781 0.86147 0.84958 1.90700 1.53916 1.65566 1.31098 1.20200 0.80612 0.87760 0.83280 1.90659 1.56172 1.64822 1.29986 1.48704 1.57086 1.18896 1.07147 1.22097 1.01486 0.95816 0.80741 1.22716 1.01934 0.92762 0.97873 1.19859 0.81255 0.90787 0.88782 1.86127 1.33387 1.47944 1.72087 1.21739 1.20081 1.01067 1.16434 0.91316 1.25798 0.97461 0.99775 0.94229 1.69818 1.40081 1.23855 1.21457 0.85455 0.79205 0.78576 0.77802 1.20176 1.20971 1.19034 1.22984 0.95832 0.80835 1.01476 0.93811 0.91648 0.92376 0.92052 0.90002 0.90907 0.94123 0.90526 0.87061 0.89980 0.87482 0.90876 0.94587 0.93482 0.89858 0.91673 0.94617 0.91882 0.90222 0.91570 0.89791 0.89037 0.77736 0.92054 0.92266 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.55 5.93 30.59 0.18 -1.37 16 3 C -0.13 -2.31 5.54 30.59 0.17 -2.14 16 4 C 0.11 2.12 5.40 86.38 0.47 2.59 16 5 N -0.58 -15.08 2.49 -823.39 -2.05 -17.13 16 6 C 0.10 2.40 5.00 86.38 0.43 2.84 16 7 C -0.12 -2.83 4.96 30.59 0.15 -2.68 16 8 C -0.11 -2.39 5.93 30.59 0.18 -2.20 16 9 C -0.15 -2.93 9.91 71.98 0.71 -2.21 16 10 C 0.51 17.59 7.64 87.27 0.67 18.25 16 11 O -0.54 -19.80 13.71 -3.25 -0.04 -19.85 16 12 C 0.50 20.21 7.52 87.27 0.66 20.86 16 13 O -0.54 -22.74 11.84 -3.25 -0.04 -22.78 16 14 N -0.59 -25.32 3.33 -813.31 -2.70 -28.02 16 15 C 0.12 4.72 5.50 86.73 0.48 5.20 16 16 C -0.12 -4.70 6.13 31.79 0.19 -4.50 16 17 C 0.23 11.47 0.87 -10.14 -0.01 11.46 16 18 O -0.59 -30.71 13.16 -148.98 -1.96 -32.67 16 19 C -0.56 -28.85 8.27 25.60 0.21 -28.64 16 20 H 0.07 3.47 7.79 -2.91 -0.02 3.45 16 21 C 0.03 1.48 5.29 84.65 0.45 1.93 16 22 N -0.91 -48.93 10.69 21.45 0.23 -48.70 16 23 Si 0.96 41.42 29.54 68.60 2.03 43.45 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 C 0.11 5.41 5.38 86.86 0.47 5.88 16 28 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.08 1.66 7.36 -2.39 -0.02 1.64 16 36 H 0.11 1.42 8.11 -2.38 -0.02 1.40 16 37 H 0.08 2.48 5.70 -2.39 -0.01 2.46 16 38 H 0.11 1.74 8.03 -2.39 -0.02 1.72 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.04 1.12 6.52 -2.38 -0.02 1.10 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.08 2.81 7.81 -2.39 -0.02 2.80 16 47 H 0.07 2.65 7.46 -2.39 -0.02 2.63 16 48 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 49 H 0.09 3.44 8.03 -2.39 -0.02 3.42 16 50 H 0.37 20.13 7.57 -74.06 -0.56 19.57 16 51 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 52 H 0.06 3.23 7.33 -2.39 -0.02 3.22 16 53 H 0.05 2.68 8.03 -2.39 -0.02 2.66 16 Total: -1.00 -61.44 417.29 1.90 -59.54 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: 0.32 Total: 42.19 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 6.12 Total: 23.96 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -4.52 Total: -93.85 kcal Atomic # 8 Polarization: -73.25 SS G_CDS: -2.04 Total: -75.29 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -61.44 1.90 -59.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328413516.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.315 kcal (2) G-P(sol) polarization free energy of solvation -61.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.26 seconds