Wall clock time and date at job start Sat Apr 11 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47149 * 2 1 4 4 C 1.53001 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47235 * 55.00395 * 4 3 2 6 6 C 1.53002 * 109.46761 * 175.00283 * 4 3 2 7 7 N 1.46502 * 109.47154 * 183.99571 * 6 4 3 8 8 C 1.34772 * 120.00308 * 185.67019 * 7 6 4 9 9 O 1.21350 * 119.99657 * 359.97438 * 8 7 6 10 10 C 1.49447 * 120.00001 * 179.97438 * 8 7 6 11 11 O 1.21349 * 120.00208 * 6.41636 * 10 8 7 12 12 N 1.34785 * 119.99631 * 186.42124 * 10 8 7 13 13 C 1.46920 * 120.63244 * 5.61268 * 12 10 8 14 14 C 1.52760 * 109.00779 * 233.58865 * 13 12 10 15 15 C 1.53048 * 109.38109 * 305.58739 * 14 13 12 16 16 C 1.50696 * 109.44656 * 181.25767 * 15 14 13 17 17 H 1.08003 * 120.00008 * 239.93563 * 16 15 14 18 18 C 1.37881 * 120.00486 * 59.94032 * 16 15 14 19 19 N 1.31513 * 119.99838 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00221 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.46882 * 59.99906 * 20 18 16 22 22 H 1.48499 * 109.47222 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47440 * 300.00053 * 20 18 16 24 24 C 1.53032 * 109.53945 * 61.24172 * 15 14 13 25 25 C 1.46934 * 120.62716 * 185.89476 * 12 10 8 26 26 O 1.42891 * 109.47227 * 294.99998 * 4 3 2 27 27 C 1.42897 * 113.99991 * 140.31318 * 26 4 3 28 28 C 1.53001 * 109.47433 * 185.03435 * 27 26 4 29 29 H 1.09001 * 109.47622 * 299.99688 * 1 2 3 30 30 H 1.08997 * 109.47931 * 59.99978 * 1 2 3 31 31 H 1.09007 * 109.46906 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47313 * 240.00524 * 2 1 3 33 33 H 1.09001 * 109.47261 * 120.00286 * 2 1 3 34 34 H 1.08994 * 109.46806 * 60.00062 * 3 2 1 35 35 H 1.09001 * 109.47273 * 300.00278 * 3 2 1 36 36 H 1.08997 * 109.47168 * 63.99075 * 6 4 3 37 37 H 1.09005 * 109.47303 * 303.99136 * 6 4 3 38 38 H 0.97003 * 119.99942 * 5.38843 * 7 6 4 39 39 H 1.08998 * 109.58881 * 353.41888 * 13 12 10 40 40 H 1.09000 * 109.58510 * 113.84863 * 13 12 10 41 41 H 1.09000 * 109.56467 * 185.55829 * 14 13 12 42 42 H 1.08994 * 109.36478 * 65.49955 * 14 13 12 43 43 H 1.09002 * 109.45854 * 301.22122 * 15 14 13 44 44 H 0.96999 * 120.00247 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.49938 * 178.68181 * 24 15 14 46 46 H 1.09004 * 109.52650 * 58.60150 * 24 15 14 47 47 H 1.08991 * 109.58461 * 246.15404 * 25 12 10 48 48 H 1.09008 * 109.58461 * 6.44033 * 25 12 10 49 49 H 1.08997 * 109.47054 * 305.03715 * 27 26 4 50 50 H 1.09002 * 109.47252 * 65.03903 * 27 26 4 51 51 H 1.09002 * 109.46997 * 59.99785 * 28 27 26 52 52 H 1.08997 * 109.47417 * 179.97438 * 28 27 26 53 53 H 1.08998 * 109.47190 * 300.00724 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9329 0.8532 -0.8428 6 6 4.0798 2.8796 -0.1263 7 7 5.5416 2.8724 -0.2229 8 6 6.2225 4.0355 -0.2266 9 8 5.6246 5.0887 -0.1504 10 6 7.7137 4.0281 -0.3246 11 8 8.3040 2.9856 -0.5177 12 7 8.4031 5.1794 -0.1983 13 6 7.7157 6.4284 0.1571 14 6 8.0584 7.4972 -0.8792 15 6 9.5793 7.6263 -0.9917 16 6 9.9189 8.7019 -1.9911 17 1 10.5001 8.4596 -2.8686 18 6 9.4878 9.9953 -1.7853 19 7 8.7797 10.2902 -0.7170 20 14 9.9094 11.3286 -3.0237 21 1 9.3451 10.9690 -4.3495 22 1 9.3326 12.6213 -2.5750 23 1 11.3850 11.4553 -3.1317 24 6 10.1732 6.2941 -1.4548 25 6 9.8553 5.2105 -0.4196 26 8 4.0468 0.8730 1.2200 27 6 5.1876 0.0274 1.0602 28 6 5.5327 -0.6224 2.4017 29 1 -0.3634 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.7764 3.4508 0.7510 37 1 3.6588 3.3376 -1.0214 38 1 6.0198 2.0304 -0.2801 39 1 6.6384 6.2627 0.1664 40 1 8.0453 6.7593 1.1420 41 1 7.6340 8.4529 -0.5718 42 1 7.6453 7.2090 -1.8457 43 1 9.9943 7.8903 -0.0190 44 1 8.4767 11.2002 -0.5720 45 1 11.2538 6.3935 -1.5572 46 1 9.7406 6.0169 -2.4162 47 1 10.3628 5.4401 0.5172 48 1 10.1896 4.2407 -0.7883 49 1 4.9652 -0.7481 0.3273 50 1 6.0344 0.6209 0.7156 51 1 4.6859 -1.2160 2.7464 52 1 6.4026 -1.2678 2.2797 53 1 5.7550 0.1531 3.1346 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331399119.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:58 Heat of formation + Delta-G solvation = -139.566361 kcal Electronic energy + Delta-G solvation = -30686.684272 eV Core-core repulsion = 26557.669961 eV Total energy + Delta-G solvation = -4129.014310 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 4.04 seconds Orbital eigenvalues (eV) -42.08973 -40.29136 -39.41304 -38.62290 -36.18965 -35.72150 -35.15384 -33.04050 -32.53699 -31.77379 -30.65255 -28.55076 -27.55694 -25.69549 -24.19117 -23.96538 -23.56614 -22.74488 -22.10060 -21.53082 -20.48473 -18.87210 -18.40167 -18.15672 -18.06815 -17.14768 -16.92917 -16.70288 -16.48834 -16.00768 -15.79664 -15.59804 -15.33262 -15.12223 -14.72254 -14.66560 -14.55074 -14.38299 -14.27668 -14.03961 -13.84055 -13.41700 -13.29385 -13.21078 -12.94583 -12.82330 -12.80173 -12.55755 -12.37737 -12.33700 -12.14940 -12.13401 -11.94282 -11.82295 -11.75256 -11.50413 -11.44644 -11.09026 -11.02095 -10.62443 -10.46307 -10.36593 -9.95515 -9.71754 -8.07371 -6.21483 0.25111 1.24422 1.42122 1.42978 1.50561 2.04621 2.41423 2.43912 2.65322 3.17479 3.19063 3.55921 3.89388 4.02534 4.10111 4.16177 4.24739 4.25840 4.29515 4.31411 4.35697 4.44915 4.47713 4.48292 4.54343 4.67123 4.69740 4.75121 4.78690 4.85903 4.92637 4.94768 4.99085 5.02107 5.08548 5.12525 5.18491 5.26466 5.29540 5.34008 5.37659 5.39227 5.50462 5.51071 5.62337 5.90653 5.97085 6.10149 6.24149 6.25111 6.37947 6.63522 6.85861 6.89095 7.46080 8.96141 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.002242 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.036327 B =12486.775028 C =13533.618975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.115 4.115 4 C 0.083 3.917 5 H 0.086 0.914 6 C 0.093 3.907 7 N -0.685 5.685 8 C 0.510 3.490 9 O -0.521 6.521 10 C 0.500 3.500 11 O -0.550 6.550 12 N -0.567 5.567 13 C 0.057 3.943 14 C -0.107 4.107 15 C 0.042 3.958 16 C -0.535 4.535 17 H 0.051 0.949 18 C 0.013 3.987 19 N -0.914 5.914 20 Si 0.952 3.048 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.271 1.271 24 C -0.113 4.113 25 C 0.111 3.889 26 O -0.389 6.389 27 C 0.048 3.952 28 C -0.150 4.150 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.414 0.586 39 H 0.148 0.852 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.021 0.979 43 H 0.003 0.997 44 H 0.261 0.739 45 H 0.073 0.927 46 H 0.044 0.956 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.069 0.931 50 H 0.040 0.960 51 H 0.066 0.934 52 H 0.085 0.915 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.360 -23.602 3.091 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.153 4.153 4 C 0.025 3.975 5 H 0.104 0.896 6 C -0.030 4.030 7 N -0.339 5.339 8 C 0.291 3.709 9 O -0.400 6.400 10 C 0.283 3.717 11 O -0.430 6.430 12 N -0.298 5.298 13 C -0.063 4.063 14 C -0.145 4.145 15 C 0.023 3.977 16 C -0.573 4.573 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.553 5.553 20 Si 0.778 3.222 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.151 4.151 25 C -0.010 4.010 26 O -0.309 6.309 27 C -0.029 4.029 28 C -0.207 4.207 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.253 0.747 39 H 0.164 0.836 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.040 0.960 43 H 0.021 0.979 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.096 0.904 48 H 0.113 0.887 49 H 0.087 0.913 50 H 0.058 0.942 51 H 0.086 0.914 52 H 0.103 0.897 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.647 -23.218 3.318 27.135 hybrid contribution 0.831 0.978 -0.743 1.483 sum -12.816 -22.240 2.576 25.797 Atomic orbital electron populations 1.21764 0.95284 1.01957 1.01978 1.21432 0.96220 0.95722 1.02230 1.21716 0.91049 0.98689 1.03820 1.22471 0.96015 0.91021 0.87989 0.89609 1.22313 0.77554 0.99469 1.03642 1.45892 1.08584 1.08085 1.71341 1.20150 0.88274 0.84808 0.77625 1.90358 1.69836 1.30110 1.49648 1.20137 0.88532 0.84071 0.78946 1.90672 1.70797 1.30875 1.50665 1.48222 1.09216 1.08492 1.63919 1.23197 1.02717 0.82622 0.97802 1.21616 0.99117 0.97924 0.95871 1.18663 0.92313 0.91522 0.95162 1.21521 1.33642 0.94149 1.07978 0.93058 1.25722 0.95047 1.00680 0.97136 1.69971 1.37345 1.19932 1.28069 0.85703 0.78596 0.78426 0.79450 1.19991 1.20958 1.19641 1.21861 1.00873 0.95124 0.97271 1.21863 0.78688 1.00507 0.99960 1.87975 1.46997 1.64836 1.31080 1.22782 0.87490 0.93044 0.99572 1.21746 1.02508 1.00656 0.95816 0.92948 0.92286 0.92369 0.91544 0.92166 0.91170 0.88952 0.90655 0.89044 0.74699 0.83562 0.92536 0.90648 0.95965 0.97915 0.92970 0.90841 0.93680 0.90396 0.88680 0.91265 0.94161 0.91445 0.89668 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.21 5.83 30.59 0.18 -1.03 16 3 C -0.11 -1.29 4.92 30.60 0.15 -1.14 16 4 C 0.08 1.14 2.33 30.60 0.07 1.22 16 5 H 0.09 0.93 7.62 -2.39 -0.02 0.91 16 6 C 0.09 1.72 5.35 86.38 0.46 2.18 16 7 N -0.68 -15.85 5.42 -464.41 -2.51 -18.36 16 8 C 0.51 15.86 7.78 87.27 0.68 16.54 16 9 O -0.52 -18.54 13.07 -3.25 -0.04 -18.58 16 10 C 0.50 17.33 7.75 87.27 0.68 18.01 16 11 O -0.55 -19.30 15.93 -3.24 -0.05 -19.35 16 12 N -0.57 -21.26 2.98 -821.30 -2.45 -23.71 16 13 C 0.06 2.34 6.25 86.22 0.54 2.88 16 14 C -0.11 -5.19 5.14 30.53 0.16 -5.03 16 15 C 0.04 2.10 2.07 -11.51 -0.02 2.08 16 16 C -0.53 -29.55 8.56 25.60 0.22 -29.33 16 17 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 18 C 0.01 0.72 5.30 84.66 0.45 1.17 16 19 N -0.91 -52.65 11.30 21.45 0.24 -52.41 16 20 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 C -0.11 -4.67 5.30 30.67 0.16 -4.51 16 25 C 0.11 3.99 6.42 86.36 0.55 4.54 16 26 O -0.39 -6.57 9.47 -148.98 -1.41 -7.98 16 27 C 0.05 0.67 6.25 71.98 0.45 1.12 16 28 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.06 0.73 7.82 -2.39 -0.02 0.72 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 1.60 8.13 -2.39 -0.02 1.58 16 37 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.41 8.55 5.42 -92.71 -0.50 8.05 16 39 H 0.15 5.95 3.74 -81.58 -0.31 5.64 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 41 H 0.08 4.12 6.03 -2.39 -0.01 4.11 16 42 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 45 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 46 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 47 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 48 H 0.09 3.14 7.04 -2.38 -0.02 3.13 16 49 H 0.07 0.72 8.00 -2.39 -0.02 0.70 16 50 H 0.04 0.63 5.82 -2.39 -0.01 0.62 16 51 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 52 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -64.80 414.42 2.07 -62.73 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.09 Total: 25.04 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 6.18 Total: 6.75 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -4.72 Total: -94.48 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -1.50 Total: -45.91 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -64.80 2.07 -62.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331399119.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.841 kcal (2) G-P(sol) polarization free energy of solvation -64.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds