Wall clock time and date at job start Sat Apr 11 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00305 * 2 1 4 4 C 1.52998 * 109.47394 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46937 * 53.18022 * 4 3 2 6 6 C 1.53003 * 109.47243 * 173.17869 * 4 3 2 7 7 N 1.46501 * 109.47178 * 185.88346 * 6 4 3 8 8 C 1.34773 * 120.00194 * 185.00899 * 7 6 4 9 9 O 1.21354 * 119.99779 * 359.97438 * 8 7 6 10 10 C 1.49442 * 120.00427 * 179.97438 * 8 7 6 11 11 O 1.21353 * 119.99997 * 6.48393 * 10 8 7 12 12 N 1.34773 * 120.00413 * 186.48124 * 10 8 7 13 13 C 1.46924 * 120.62795 * 6.38303 * 12 10 8 14 14 C 1.52764 * 109.00577 * 233.58188 * 13 12 10 15 15 C 1.53045 * 109.38298 * 305.58596 * 14 13 12 16 16 C 1.50702 * 109.45096 * 181.25489 * 15 14 13 17 17 H 1.07995 * 120.00227 * 239.93896 * 16 15 14 18 18 C 1.37878 * 119.99782 * 59.93788 * 16 15 14 19 19 N 1.31521 * 120.00270 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99775 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47408 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47075 * 120.00143 * 20 18 16 23 23 H 1.48499 * 109.47073 * 239.99909 * 20 18 16 24 24 C 1.53035 * 109.53685 * 61.23917 * 15 14 13 25 25 C 1.46930 * 120.63408 * 186.65498 * 12 10 8 26 26 C 1.52999 * 109.47671 * 293.18279 * 4 3 2 27 27 C 1.53008 * 109.46613 * 306.51402 * 26 4 3 28 28 C 1.52998 * 109.47223 * 66.51018 * 26 4 3 29 29 H 1.08995 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46505 * 299.99434 * 1 2 3 31 31 H 1.08996 * 109.47024 * 59.99656 * 1 2 3 32 32 H 1.09000 * 109.47494 * 300.00799 * 3 2 1 33 33 H 1.09008 * 109.46972 * 60.00325 * 3 2 1 34 34 H 1.09001 * 109.46910 * 305.88531 * 6 4 3 35 35 H 1.08994 * 109.46836 * 65.88320 * 6 4 3 36 36 H 0.97000 * 119.99754 * 5.00997 * 7 6 4 37 37 H 1.08997 * 109.58779 * 353.40855 * 13 12 10 38 38 H 1.09001 * 109.59044 * 113.84147 * 13 12 10 39 39 H 1.09001 * 109.56711 * 185.55023 * 14 13 12 40 40 H 1.08997 * 109.36567 * 65.49723 * 14 13 12 41 41 H 1.09009 * 109.45942 * 301.21989 * 15 14 13 42 42 H 0.96996 * 120.00009 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.49795 * 178.68332 * 24 15 14 44 44 H 1.09000 * 109.52335 * 58.60693 * 24 15 14 45 45 H 1.08994 * 109.58728 * 246.16065 * 25 12 10 46 46 H 1.08997 * 109.58339 * 6.44552 * 25 12 10 47 47 H 1.08993 * 109.47356 * 186.51748 * 26 4 3 48 48 H 1.08995 * 109.47175 * 55.62960 * 27 26 4 49 49 H 1.09000 * 109.46558 * 175.62953 * 27 26 4 50 50 H 1.08996 * 109.47147 * 295.62892 * 27 26 4 51 51 H 1.09003 * 109.47020 * 64.05234 * 28 26 4 52 52 H 1.08996 * 109.47390 * 184.04713 * 28 26 4 53 53 H 1.09004 * 109.47417 * 304.05143 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8494 0.5417 -0.8218 6 6 4.1571 2.5721 -0.1707 7 7 5.6096 2.4426 -0.3109 8 6 6.3817 3.5455 -0.3731 9 8 5.8736 4.6459 -0.3134 10 6 7.8634 3.4134 -0.5156 11 8 8.3609 2.3209 -0.6935 12 7 8.6473 4.5075 -0.4467 13 6 8.0779 5.8152 -0.0939 14 6 8.4597 6.8305 -1.1696 15 6 9.9797 6.8339 -1.3483 16 6 10.3606 7.8570 -2.3872 17 1 10.8820 7.5499 -3.2817 18 6 10.0434 9.1850 -2.1956 19 7 9.4080 9.5590 -1.1065 20 14 10.5149 10.4531 -3.4838 21 1 11.2163 9.7808 -4.6068 22 1 9.2899 11.1203 -3.9931 23 1 11.4138 11.4663 -2.8751 24 6 10.4447 5.4485 -1.8025 25 6 10.0864 4.4164 -0.7286 26 6 3.9986 0.5785 1.3269 27 6 3.4212 1.3907 2.4880 28 6 3.5108 -0.8684 1.4244 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8464 -0.8899 33 1 1.6887 1.8463 0.8901 34 1 3.7468 3.0464 -1.0622 35 1 3.9295 3.1826 0.7031 36 1 6.0157 1.5629 -0.3591 37 1 6.9923 5.7374 -0.0359 38 1 8.4752 6.1393 0.8680 39 1 8.1266 7.8238 -0.8687 40 1 7.9834 6.5563 -2.1108 41 1 10.4562 7.0842 -0.4004 42 1 9.1845 10.4932 -0.9720 43 1 11.5244 5.4580 -1.9521 44 1 9.9502 5.1868 -2.7380 45 1 10.6507 4.6241 0.1805 46 1 10.3259 3.4152 -1.0867 47 1 5.0873 0.5990 1.3752 48 1 2.3361 1.4352 2.3960 49 1 3.6867 0.9144 3.4318 50 1 3.8297 2.4009 2.4632 51 1 3.9787 -1.4632 0.6399 52 1 3.7785 -1.2772 2.3987 53 1 2.4278 -0.8956 1.3041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336230299.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:17 Heat of formation + Delta-G solvation = -130.202576 kcal Electronic energy + Delta-G solvation = -30830.091974 eV Core-core repulsion = 26701.483708 eV Total energy + Delta-G solvation = -4128.608266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 7.94 seconds Orbital eigenvalues (eV) -42.05310 -40.33672 -39.50355 -38.60407 -37.45986 -35.59559 -34.94903 -33.02141 -31.75657 -31.48104 -28.70667 -28.20944 -27.82660 -26.59623 -25.31900 -24.20893 -23.90080 -23.31149 -21.68298 -20.58523 -20.02764 -18.78035 -18.38157 -18.08349 -17.64733 -17.38179 -16.98905 -16.79743 -16.45989 -15.97826 -15.86505 -15.73595 -15.42230 -15.06082 -14.84707 -14.69072 -14.58843 -14.49948 -14.23270 -13.90317 -13.43104 -13.40719 -13.34257 -13.21585 -12.90179 -12.83572 -12.72721 -12.54424 -12.51210 -12.29530 -12.24966 -12.13807 -11.91681 -11.57592 -11.55727 -11.48579 -11.11424 -11.05095 -11.00761 -10.45739 -10.36044 -10.33076 -9.95413 -9.68884 -8.07444 -6.21220 0.29841 1.27506 1.40046 1.42525 1.53112 2.09280 2.42084 2.43968 2.86930 3.18869 3.27056 3.68080 3.76737 3.95743 4.11767 4.27304 4.31448 4.32576 4.36523 4.42334 4.49619 4.50406 4.55248 4.56214 4.58120 4.63147 4.63848 4.76853 4.80805 4.91572 4.93277 4.93894 4.94939 5.09432 5.13772 5.14485 5.18687 5.19890 5.32477 5.35902 5.39829 5.49211 5.54160 5.63491 5.74165 5.96311 6.00579 6.11671 6.27229 6.29222 6.38858 6.68671 6.88914 6.92105 7.46416 8.96395 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.002174 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.511031 B =12878.662794 C =13584.857826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.394 6.394 3 C 0.064 3.936 4 C -0.087 4.087 5 H 0.089 0.911 6 C 0.120 3.880 7 N -0.680 5.680 8 C 0.513 3.487 9 O -0.522 6.522 10 C 0.500 3.500 11 O -0.551 6.551 12 N -0.569 5.569 13 C 0.059 3.941 14 C -0.107 4.107 15 C 0.042 3.958 16 C -0.533 4.533 17 H 0.050 0.950 18 C 0.013 3.987 19 N -0.914 5.914 20 Si 0.952 3.048 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.280 1.280 24 C -0.114 4.114 25 C 0.112 3.888 26 C -0.090 4.090 27 C -0.152 4.152 28 C -0.152 4.152 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.419 0.581 37 H 0.149 0.851 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.021 0.979 41 H 0.003 0.997 42 H 0.261 0.739 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.056 0.944 50 H 0.050 0.950 51 H 0.046 0.954 52 H 0.047 0.953 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.409 -19.902 5.899 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.313 6.313 3 C -0.013 4.013 4 C -0.106 4.106 5 H 0.107 0.893 6 C -0.003 4.003 7 N -0.333 5.333 8 C 0.294 3.706 9 O -0.401 6.401 10 C 0.283 3.717 11 O -0.430 6.430 12 N -0.300 5.300 13 C -0.062 4.062 14 C -0.146 4.146 15 C 0.023 3.977 16 C -0.571 4.571 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.553 5.553 20 Si 0.778 3.222 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.206 1.206 24 C -0.152 4.152 25 C -0.010 4.010 26 C -0.108 4.108 27 C -0.209 4.209 28 C -0.209 4.209 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.257 0.743 37 H 0.165 0.835 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.040 0.960 41 H 0.021 0.979 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.096 0.904 46 H 0.112 0.888 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.069 0.931 51 H 0.065 0.935 52 H 0.066 0.934 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.474 -19.709 5.939 27.001 hybrid contribution 0.571 1.045 -0.719 1.391 sum -16.902 -18.664 5.220 25.716 Atomic orbital electron populations 1.22905 0.80237 1.03608 1.00694 1.87899 1.20627 1.27638 1.95138 1.22522 0.91884 0.85207 1.01652 1.21339 0.94642 0.94942 0.99652 0.89278 1.21566 0.77577 0.97872 1.03243 1.45682 1.07976 1.08812 1.70812 1.20039 0.87709 0.85114 0.77728 1.90369 1.74221 1.25458 1.50035 1.20178 0.88178 0.84426 0.78908 1.90688 1.75691 1.25928 1.50735 1.48214 1.09230 1.08759 1.63799 1.23176 1.04550 0.80809 0.97638 1.21613 0.98452 0.98733 0.95761 1.18672 0.92573 0.91308 0.95145 1.21581 1.36841 0.93003 1.05681 0.93146 1.25711 0.95157 1.00358 0.97338 1.69985 1.41112 1.16905 1.27312 0.85602 0.77907 0.79147 0.79553 1.19406 1.20760 1.20588 1.21862 1.00829 0.95416 0.97060 1.21839 0.79144 1.00612 0.99384 1.21087 0.99827 0.96182 0.93719 1.21976 1.01545 0.99563 0.97834 1.22051 1.03907 0.94375 1.00551 0.88764 0.93276 0.93574 0.92331 0.91367 0.90489 0.89915 0.74304 0.83463 0.92518 0.90655 0.95996 0.97879 0.92984 0.90949 0.93748 0.90415 0.88815 0.91837 0.91488 0.92517 0.93109 0.93521 0.93435 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 11.01 113.37 1.25 1.43 16 2 O -0.39 -5.11 7.37 -148.98 -1.10 -6.21 16 3 C 0.06 0.74 4.98 71.98 0.36 1.10 16 4 C -0.09 -1.15 1.99 -10.79 -0.02 -1.17 16 5 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 6 C 0.12 2.01 4.96 86.38 0.43 2.43 16 7 N -0.68 -14.55 5.14 -464.42 -2.39 -16.94 16 8 C 0.51 15.19 7.78 87.27 0.68 15.87 16 9 O -0.52 -17.77 13.09 -3.26 -0.04 -17.81 16 10 C 0.50 16.98 7.75 87.27 0.68 17.66 16 11 O -0.55 -19.27 15.94 -3.25 -0.05 -19.33 16 12 N -0.57 -21.03 2.98 -821.33 -2.45 -23.47 16 13 C 0.06 2.36 6.25 86.22 0.54 2.90 16 14 C -0.11 -5.16 5.14 30.53 0.16 -5.00 16 15 C 0.04 2.07 2.07 -11.51 -0.02 2.05 16 16 C -0.53 -29.44 8.56 25.60 0.22 -29.22 16 17 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 18 C 0.01 0.72 5.30 84.65 0.45 1.17 16 19 N -0.91 -52.39 11.30 21.45 0.24 -52.14 16 20 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 C -0.11 -4.69 5.30 30.67 0.16 -4.53 16 25 C 0.11 3.99 6.42 86.36 0.55 4.55 16 26 C -0.09 -1.24 2.63 -10.79 -0.03 -1.27 16 27 C -0.15 -2.01 8.51 71.98 0.61 -1.40 16 28 C -0.15 -2.11 8.79 71.98 0.63 -1.48 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 33 H 0.07 0.69 5.84 -2.38 -0.01 0.68 16 34 H 0.08 1.30 8.13 -2.39 -0.02 1.28 16 35 H 0.08 1.43 6.46 -2.39 -0.02 1.41 16 36 H 0.42 8.03 7.39 -92.71 -0.68 7.34 16 37 H 0.15 5.81 3.76 -80.15 -0.30 5.51 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.08 4.09 6.03 -2.39 -0.01 4.07 16 40 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 41 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 42 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 43 H 0.07 2.81 8.14 -2.38 -0.02 2.80 16 44 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.09 3.12 7.05 -2.39 -0.02 3.10 16 47 H 0.06 0.98 7.22 -2.39 -0.02 0.96 16 48 H 0.07 0.77 5.92 -2.39 -0.01 0.76 16 49 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.05 0.74 6.70 -2.39 -0.02 0.72 16 51 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 53 H 0.09 1.24 5.07 -2.38 -0.01 1.23 16 Total: -1.00 -64.21 403.68 2.81 -61.39 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.07 Total: 23.55 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 6.64 Total: 5.09 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -4.59 Total: -92.56 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.19 Total: -43.35 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -64.21 2.81 -61.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336230299.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.810 kcal (2) G-P(sol) polarization free energy of solvation -64.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.95 seconds