Wall clock time and date at job start Sat Apr 11 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 119.99849 * 2 1 4 4 C 1.52996 * 109.47404 * 269.99872 * 3 2 1 5 5 O 1.42898 * 109.47172 * 65.00336 * 4 3 2 6 6 C 1.42896 * 114.00163 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47117 * 60.00286 * 6 5 4 8 8 C 1.52998 * 109.47123 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47248 * 300.00230 * 6 5 4 10 10 C 1.34777 * 119.99540 * 180.02562 * 2 1 3 11 11 O 1.21353 * 119.99525 * 184.98825 * 10 2 1 12 12 C 1.49451 * 120.00272 * 4.99253 * 10 2 1 13 13 O 1.21353 * 119.99787 * 275.27859 * 12 10 2 14 14 N 1.34772 * 120.00036 * 95.28028 * 12 10 2 15 15 C 1.46930 * 120.63002 * 174.95859 * 14 12 10 16 16 C 1.53195 * 108.88861 * 233.55737 * 15 14 12 17 17 C 1.53070 * 109.29914 * 305.57586 * 16 15 14 18 18 C 1.50698 * 109.44432 * 181.23827 * 17 16 15 19 19 H 1.07997 * 120.00200 * 239.79567 * 18 17 16 20 20 C 1.37876 * 119.99738 * 59.79567 * 18 17 16 21 21 N 1.31518 * 120.00568 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46802 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47134 * 120.00004 * 22 20 18 25 25 H 1.48499 * 109.47314 * 240.00079 * 22 20 18 26 26 C 1.53041 * 109.65489 * 61.15664 * 17 16 15 27 27 C 1.46932 * 120.63250 * 354.97883 * 14 12 10 28 28 H 1.08992 * 109.47286 * 264.79077 * 1 2 3 29 29 H 1.09000 * 109.47213 * 24.79016 * 1 2 3 30 30 H 1.08999 * 109.46987 * 144.78942 * 1 2 3 31 31 H 1.08995 * 109.47405 * 30.00544 * 3 2 1 32 32 H 1.09009 * 109.46374 * 150.00221 * 3 2 1 33 33 H 1.09006 * 109.47035 * 185.00329 * 4 3 2 34 34 H 1.08999 * 109.47375 * 305.00061 * 4 3 2 35 35 H 1.08998 * 109.47571 * 59.99498 * 7 6 5 36 36 H 1.09002 * 109.47648 * 180.02562 * 7 6 5 37 37 H 1.09005 * 109.47398 * 299.99606 * 7 6 5 38 38 H 1.09006 * 109.47005 * 60.00436 * 8 6 5 39 39 H 1.09001 * 109.47313 * 179.97438 * 8 6 5 40 40 H 1.08995 * 109.47595 * 300.00169 * 8 6 5 41 41 H 1.08999 * 109.47257 * 59.99727 * 9 6 5 42 42 H 1.09001 * 109.47435 * 180.02562 * 9 6 5 43 43 H 1.09006 * 109.47128 * 299.99716 * 9 6 5 44 44 H 1.08993 * 109.58611 * 353.41813 * 15 14 12 45 45 H 1.08999 * 109.58363 * 113.70546 * 15 14 12 46 46 H 1.08996 * 109.49923 * 65.39140 * 16 15 14 47 47 H 1.09002 * 109.49537 * 185.48366 * 16 15 14 48 48 H 1.09006 * 109.34825 * 301.13273 * 17 16 15 49 49 H 0.96991 * 120.00562 * 179.97438 * 21 20 18 50 50 H 1.09007 * 109.49501 * 178.74689 * 26 17 16 51 51 H 1.08999 * 109.52712 * 58.67242 * 26 17 16 52 52 H 1.08999 * 109.58983 * 246.15846 * 27 14 12 53 53 H 1.09000 * 109.58610 * 6.44363 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 8 1.2061 1.9936 -2.0813 6 6 1.3325 2.4176 -3.4401 7 6 2.0184 1.3196 -4.2553 8 6 -0.0565 2.6907 -4.0205 9 6 2.1710 3.6960 -3.4995 10 6 2.1388 -1.1673 -0.0005 11 8 3.3489 -1.1693 0.0909 12 6 1.3958 -2.4590 -0.1137 13 8 0.9317 -2.9810 0.8786 14 7 1.2412 -3.0442 -1.3179 15 6 0.6106 -4.3663 -1.4323 16 6 1.5454 -5.2959 -2.2126 17 6 1.9004 -4.6475 -3.5529 18 6 2.7956 -5.5726 -4.3363 19 1 3.7830 -5.2482 -4.6299 20 6 2.3541 -6.8333 -4.6782 21 7 1.1515 -7.2282 -4.3211 22 14 3.4640 -7.9804 -5.6486 23 1 4.7564 -7.3027 -5.9242 24 1 3.7110 -9.2145 -4.8603 25 1 2.8074 -8.3361 -6.9321 26 6 2.6259 -3.3225 -3.3077 27 6 1.7005 -2.3724 -2.5413 28 1 -0.3633 -0.0933 1.0233 29 1 -0.3634 0.9330 -0.4309 30 1 -0.3633 -0.8396 -0.5925 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1382 0.5139 33 1 3.0733 2.6065 -1.4437 34 1 2.9643 0.9132 -1.9815 35 1 1.4211 0.4088 -4.2129 36 1 2.1153 1.6431 -5.2916 37 1 3.0080 1.1245 -3.8420 38 1 -0.5456 3.4729 -3.4398 39 1 0.0399 3.0146 -5.0568 40 1 -0.6535 1.7798 -3.9782 41 1 3.1606 3.5011 -3.0861 42 1 2.2671 4.0197 -4.5359 43 1 1.6823 4.4784 -2.9187 44 1 0.4358 -4.7751 -0.4371 45 1 -0.3380 -4.2741 -1.9612 46 1 2.4567 -5.4613 -1.6380 47 1 1.0472 -6.2494 -2.3877 48 1 0.9866 -4.4621 -4.1176 49 1 0.8408 -8.1149 -4.5619 50 1 2.8971 -2.8739 -4.2635 51 1 3.5273 -3.5036 -2.7222 52 1 0.8420 -2.1180 -3.1628 53 1 2.2427 -1.4643 -2.2778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344897946.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:47 Heat of formation + Delta-G solvation = -139.445885 kcal Electronic energy + Delta-G solvation = -32336.646931 eV Core-core repulsion = 28207.637845 eV Total energy + Delta-G solvation = -4129.009086 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -42.10904 -40.30613 -39.68167 -38.52719 -36.99876 -35.46716 -34.34231 -33.03017 -32.07086 -31.06512 -28.49583 -28.29269 -28.23477 -27.71845 -26.11966 -24.65429 -23.96310 -22.80104 -21.20228 -20.85919 -19.78869 -18.99469 -18.48790 -18.09750 -17.63295 -17.35081 -16.89692 -16.52545 -16.33302 -15.88381 -15.71288 -15.45991 -15.09175 -14.99271 -14.64514 -14.57416 -14.40078 -14.27368 -14.12470 -13.98754 -13.63964 -13.54493 -13.37321 -13.10402 -12.93925 -12.87350 -12.85333 -12.70048 -12.61698 -12.58065 -12.53654 -12.46811 -12.21921 -12.07127 -12.01372 -11.48728 -11.36420 -11.14339 -10.89998 -10.72095 -10.43620 -10.38075 -9.91344 -9.79598 -8.09351 -6.22266 0.88435 1.02656 1.39644 1.43065 1.44021 1.52899 2.24550 2.43426 2.72161 3.05515 3.17871 3.84682 3.89708 3.96309 4.06935 4.13385 4.16730 4.17459 4.20423 4.25430 4.41012 4.41412 4.43758 4.49046 4.59324 4.62620 4.68718 4.73641 4.74327 4.82656 4.86294 4.87403 4.88738 4.96180 5.02113 5.04631 5.05340 5.13785 5.23364 5.28397 5.32975 5.41250 5.42395 5.43504 5.62935 5.90795 5.94005 6.04725 6.12713 6.35915 6.36624 6.61230 6.66117 6.87373 7.45775 8.94648 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012040 B = 0.003404 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.946330 B = 8223.132486 C = 9594.131947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.583 5.583 3 C 0.114 3.886 4 C 0.043 3.957 5 O -0.381 6.381 6 C 0.104 3.896 7 C -0.181 4.181 8 C -0.135 4.135 9 C -0.174 4.174 10 C 0.520 3.480 11 O -0.546 6.546 12 C 0.509 3.491 13 O -0.557 6.557 14 N -0.580 5.580 15 C 0.119 3.881 16 C -0.115 4.115 17 C 0.049 3.951 18 C -0.533 4.533 19 H 0.049 0.951 20 C 0.018 3.982 21 N -0.912 5.912 22 Si 0.948 3.052 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.278 1.278 26 C -0.115 4.115 27 C 0.119 3.881 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.056 0.944 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.018 0.982 47 H 0.082 0.918 48 H 0.014 0.986 49 H 0.261 0.739 50 H 0.075 0.925 51 H 0.038 0.962 52 H 0.092 0.908 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 24.626 2.474 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.316 5.316 3 C -0.008 4.008 4 C -0.034 4.034 5 O -0.301 6.301 6 C 0.065 3.935 7 C -0.239 4.239 8 C -0.192 4.192 9 C -0.231 4.231 10 C 0.302 3.698 11 O -0.424 6.424 12 C 0.292 3.708 13 O -0.436 6.436 14 N -0.312 5.312 15 C -0.003 4.003 16 C -0.153 4.153 17 C 0.030 3.970 18 C -0.571 4.571 19 H 0.067 0.933 20 C -0.181 4.181 21 N -0.552 5.552 22 Si 0.775 3.225 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.204 1.204 26 C -0.153 4.153 27 C -0.003 4.003 28 H 0.087 0.913 29 H 0.131 0.869 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.037 0.963 47 H 0.100 0.900 48 H 0.032 0.968 49 H 0.071 0.929 50 H 0.094 0.906 51 H 0.057 0.943 52 H 0.110 0.890 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.305 24.204 3.100 24.625 hybrid contribution 0.980 -1.374 -0.625 1.799 sum -2.326 22.831 2.475 23.082 Atomic orbital electron populations 1.22040 0.76716 1.04872 1.02662 1.47865 1.08779 1.04683 1.70283 1.21878 0.99038 0.83656 0.96183 1.22930 0.87489 1.00030 0.92950 1.87910 1.29159 1.87521 1.25481 1.21612 0.97048 0.93250 0.81607 1.22463 1.00693 0.99376 1.01333 1.21752 0.94024 1.02314 1.01111 1.22388 1.00043 0.97260 1.03444 1.20140 0.87372 0.85159 0.77096 1.90769 1.14090 1.86845 1.50684 1.20494 0.79786 0.86731 0.83824 1.90733 1.49789 1.66077 1.36953 1.48311 1.57223 1.19648 1.06039 1.21789 0.96272 0.81158 1.01034 1.21834 0.97036 1.00074 0.96377 1.18598 0.94860 0.91271 0.92268 1.21557 1.01294 0.99824 1.34465 0.93250 1.25639 0.96285 0.99394 0.96824 1.69946 1.18377 1.19762 1.47075 0.85654 0.79367 0.78886 0.78625 1.19523 1.21042 1.20363 1.21861 0.97568 0.96627 0.99261 1.21894 0.98922 0.94647 0.84819 0.91335 0.86868 0.92504 0.86165 0.88556 0.89859 0.94355 0.92746 0.90497 0.92927 0.91439 0.90044 0.92583 0.92308 0.90666 0.91284 0.90618 0.90038 0.96264 0.89963 0.96826 0.92922 0.90614 0.94338 0.89032 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 10.01 127.77 1.28 2.77 16 2 N -0.58 -13.61 2.84 -848.35 -2.41 -16.01 16 3 C 0.11 1.96 5.83 86.38 0.50 2.46 16 4 C 0.04 0.72 5.48 71.98 0.39 1.11 16 5 O -0.38 -6.32 8.91 -148.98 -1.33 -7.65 16 6 C 0.10 1.50 1.14 -10.80 -0.01 1.48 16 7 C -0.18 -3.03 8.25 71.98 0.59 -2.44 16 8 C -0.13 -1.68 8.84 71.98 0.64 -1.05 16 9 C -0.17 -1.94 8.25 71.98 0.59 -1.35 16 10 C 0.52 17.00 5.45 87.27 0.48 17.47 16 11 O -0.55 -20.79 16.65 -3.26 -0.05 -20.85 16 12 C 0.51 18.90 5.69 87.27 0.50 19.39 16 13 O -0.56 -23.41 16.53 -3.25 -0.05 -23.46 16 14 N -0.58 -21.14 2.97 -820.47 -2.44 -23.58 16 15 C 0.12 4.69 6.41 86.36 0.55 5.25 16 16 C -0.11 -5.41 5.16 30.68 0.16 -5.25 16 17 C 0.05 2.32 2.06 -11.50 -0.02 2.30 16 18 C -0.53 -28.72 8.56 25.60 0.22 -28.50 16 19 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 20 C 0.02 0.95 5.30 84.65 0.45 1.40 16 21 N -0.91 -50.83 11.30 21.45 0.24 -50.59 16 22 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 26 C -0.12 -4.57 5.30 30.67 0.16 -4.40 16 27 C 0.12 3.90 6.36 86.36 0.55 4.45 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.11 1.61 7.22 -2.39 -0.02 1.59 16 30 H 0.06 1.24 6.99 -2.39 -0.02 1.22 16 31 H 0.12 1.37 8.07 -2.39 -0.02 1.35 16 32 H 0.10 1.81 7.36 -2.38 -0.02 1.80 16 33 H 0.08 1.05 6.42 -2.38 -0.02 1.03 16 34 H 0.04 0.81 6.42 -2.39 -0.02 0.79 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 0.95 6.54 -2.38 -0.02 0.93 16 38 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.66 6.54 -2.39 -0.02 0.65 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.08 3.04 7.04 -2.39 -0.02 3.02 16 45 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 46 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.08 4.32 6.03 -2.39 -0.01 4.30 16 48 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 50 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 51 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 52 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 53 H 0.08 2.39 6.31 -2.39 -0.02 2.37 16 Total: -1.00 -67.47 413.14 3.89 -63.57 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.88 Total: 18.30 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 7.03 Total: 15.10 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -4.60 Total: -90.18 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -1.44 Total: -51.96 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.47 3.89 -63.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344897946.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.871 kcal (2) G-P(sol) polarization free energy of solvation -67.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds