Wall clock time and date at job start Sat Apr 11 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99810 * 2 1 4 4 C 1.52998 * 109.47142 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47562 * 65.00393 * 4 3 2 6 6 C 1.34783 * 119.99544 * 268.01693 * 5 4 3 7 7 O 1.21345 * 119.99796 * 185.38500 * 6 5 4 8 8 C 1.49450 * 119.99978 * 5.38565 * 6 5 4 9 9 O 1.21350 * 120.00132 * 357.26114 * 8 6 5 10 10 N 1.34774 * 119.99872 * 177.26368 * 8 6 5 11 11 C 1.46499 * 119.99968 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.47291 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46921 * 299.99985 * 12 11 10 14 14 C 1.52993 * 109.47330 * 59.99972 * 12 11 10 15 15 C 1.50700 * 109.47323 * 180.02562 * 12 11 10 16 16 H 1.08005 * 119.99839 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00321 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99843 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00291 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47266 * 59.99732 * 19 17 15 21 21 H 1.48507 * 109.46967 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46660 * 299.99289 * 19 17 15 23 23 C 1.46496 * 120.00587 * 88.00918 * 5 4 3 24 24 C 1.54260 * 110.03343 * 238.13212 * 23 5 4 25 25 C 1.54968 * 104.15965 * 217.13243 * 24 23 5 26 26 C 1.54887 * 102.77378 * 37.89214 * 25 24 23 27 27 C 1.53872 * 110.03246 * 120.91168 * 23 5 4 28 28 H 1.09003 * 109.46494 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47358 * 299.99983 * 1 2 3 30 30 H 1.09007 * 109.47212 * 60.00711 * 1 2 3 31 31 H 1.09003 * 109.47616 * 59.99765 * 3 2 1 32 32 H 1.08998 * 109.47291 * 299.99663 * 3 2 1 33 33 H 1.08999 * 109.47407 * 304.99693 * 4 3 2 34 34 H 1.09008 * 109.47140 * 185.00254 * 4 3 2 35 35 H 0.96998 * 120.00377 * 0.02562 * 10 8 6 36 36 H 1.08999 * 109.47435 * 300.00361 * 11 10 8 37 37 H 1.09003 * 109.47318 * 60.00267 * 11 10 8 38 38 H 1.08999 * 109.46987 * 59.99908 * 13 12 11 39 39 H 1.08992 * 109.46921 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.47358 * 300.00130 * 13 12 11 41 41 H 1.09004 * 109.47317 * 59.99838 * 14 12 11 42 42 H 1.09001 * 109.47519 * 180.02562 * 14 12 11 43 43 H 1.09009 * 109.47031 * 300.00356 * 14 12 11 44 44 H 0.96996 * 120.00528 * 180.02562 * 18 17 15 45 45 H 1.09001 * 110.01680 * 359.52416 * 23 5 4 46 46 H 1.09000 * 110.48997 * 335.78167 * 24 23 5 47 47 H 1.09004 * 110.49235 * 98.42831 * 24 23 5 48 48 H 1.08989 * 110.72493 * 279.57742 * 25 24 23 49 49 H 1.09000 * 110.92440 * 156.29351 * 25 24 23 50 50 H 1.09010 * 110.48663 * 203.40473 * 26 25 24 51 51 H 1.09000 * 110.60301 * 80.81966 * 26 25 24 52 52 H 1.09001 * 110.03304 * 238.57454 * 27 23 5 53 53 H 1.09002 * 110.03190 * 0.02562 * 27 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 7 3.9767 0.5642 -1.2509 6 6 4.1345 -0.7726 -1.3212 7 8 4.5927 -1.2774 -2.3249 8 6 3.7450 -1.6329 -0.1628 9 8 3.3334 -1.1245 0.8593 10 7 3.8510 -2.9734 -0.2535 11 6 3.4698 -3.8167 0.8822 12 6 3.6854 -5.2876 0.5202 13 6 2.8243 -5.6458 -0.6928 14 6 5.1600 -5.5196 0.1852 15 6 3.2926 -6.1552 1.6882 16 1 2.9255 -5.7027 2.5976 17 6 3.4009 -7.5265 1.5955 18 7 3.8465 -8.0776 0.4876 19 14 2.9134 -8.6019 3.0430 20 1 1.4819 -8.3762 3.3674 21 1 3.1216 -10.0296 2.6912 22 1 3.7487 -8.2550 4.2208 23 6 4.2464 1.3963 -2.4260 24 6 3.3559 0.9513 -3.6043 25 6 4.2663 1.1094 -4.8483 26 6 5.6501 0.6569 -4.3197 27 6 5.7046 1.2097 -2.8805 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 1.6885 1.8465 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8507 0.5687 0.8427 34 1 3.9783 2.1767 0.0903 35 1 4.1804 -3.3798 -1.0703 36 1 4.0834 -3.5619 1.7462 37 1 2.4192 -3.6513 1.1212 38 1 3.1080 -5.0183 -1.5377 39 1 2.9782 -6.6935 -0.9509 40 1 1.7737 -5.4806 -0.4541 41 1 5.7735 -5.2644 1.0493 42 1 5.3136 -6.5674 -0.0731 43 1 5.4437 -4.8920 -0.6598 44 1 3.9224 -9.0423 0.4222 45 1 4.0596 2.4444 -2.1918 46 1 3.0538 -0.0889 -3.4826 47 1 2.4811 1.5965 -3.6865 48 1 4.2982 2.1492 -5.1733 49 1 3.9325 0.4627 -5.6598 50 1 6.4487 1.0872 -4.9241 51 1 5.7214 -0.4307 -4.3137 52 1 6.2251 2.1673 -2.8678 53 1 6.2114 0.4996 -2.2271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345424458.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:02 Heat of formation + Delta-G solvation = -123.639765 kcal Electronic energy + Delta-G solvation = -32391.050873 eV Core-core repulsion = 28262.727192 eV Total energy + Delta-G solvation = -4128.323681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -41.98469 -40.07041 -38.78299 -38.17500 -37.93863 -35.97701 -34.78407 -32.66979 -30.85071 -29.59255 -29.01165 -27.65140 -27.58901 -27.24465 -26.95856 -24.77896 -23.48619 -22.02017 -21.52397 -20.65986 -20.17533 -18.78528 -17.84082 -17.69918 -17.27538 -17.10984 -16.98569 -16.52756 -16.44391 -16.31973 -15.77212 -15.48017 -15.24163 -15.23823 -14.79068 -14.70270 -14.31334 -14.07661 -14.02849 -13.45172 -13.38579 -13.15658 -13.11700 -13.05383 -12.66220 -12.61566 -12.53080 -12.49101 -12.27335 -12.21256 -12.11542 -11.96935 -11.96223 -11.88829 -11.49491 -11.46126 -11.35113 -11.22463 -10.72722 -10.47397 -10.38965 -10.02944 -9.95260 -9.67504 -8.00234 -6.17072 0.60624 1.45851 1.46163 1.50075 1.54613 2.38500 2.45286 2.63653 3.05974 3.23106 3.50976 3.71490 3.73852 3.96737 4.22247 4.29608 4.40642 4.41095 4.45695 4.49900 4.51898 4.53693 4.56485 4.63566 4.65714 4.67602 4.69736 4.83236 4.85812 4.94000 4.96223 5.04508 5.04904 5.06502 5.10857 5.12211 5.18040 5.28644 5.31726 5.38044 5.55533 5.57916 5.64911 5.67459 5.69142 6.08705 6.10965 6.20220 6.42355 6.43256 6.47292 6.86569 6.92063 7.21748 7.50677 8.98859 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.003130 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.528447 B = 8943.657061 C =10002.126587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.398 6.398 3 C 0.050 3.950 4 C 0.084 3.916 5 N -0.571 5.571 6 C 0.514 3.486 7 O -0.536 6.536 8 C 0.495 3.505 9 O -0.512 6.512 10 N -0.693 5.693 11 C 0.153 3.847 12 C 0.051 3.949 13 C -0.119 4.119 14 C -0.120 4.120 15 C -0.527 4.527 16 H 0.050 0.950 17 C 0.026 3.974 18 N -0.902 5.902 19 Si 0.949 3.051 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.138 3.862 24 C -0.132 4.132 25 C -0.112 4.112 26 C -0.119 4.119 27 C -0.125 4.125 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.406 0.594 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.025 0.975 39 H 0.062 0.938 40 H 0.020 0.980 41 H 0.022 0.978 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.260 0.740 45 H 0.129 0.871 46 H 0.043 0.957 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.044 0.956 52 H 0.092 0.908 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 24.591 -7.176 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.317 6.317 3 C -0.028 4.028 4 C -0.037 4.037 5 N -0.303 5.303 6 C 0.297 3.703 7 O -0.413 6.413 8 C 0.276 3.724 9 O -0.388 6.388 10 N -0.346 5.346 11 C 0.030 3.970 12 C 0.051 3.949 13 C -0.177 4.177 14 C -0.178 4.178 15 C -0.566 4.566 16 H 0.069 0.931 17 C -0.173 4.173 18 N -0.540 5.540 19 Si 0.775 3.225 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.037 3.963 24 C -0.171 4.171 25 C -0.150 4.150 26 C -0.157 4.157 27 C -0.164 4.164 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.142 0.858 35 H 0.243 0.757 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.039 0.961 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.147 0.853 46 H 0.062 0.938 47 H 0.099 0.901 48 H 0.108 0.892 49 H 0.078 0.922 50 H 0.093 0.907 51 H 0.063 0.937 52 H 0.110 0.890 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.973 24.349 -7.029 25.362 hybrid contribution -0.487 -1.259 0.523 1.447 sum -1.460 23.090 -6.507 24.033 Atomic orbital electron populations 1.22726 0.81235 1.02205 1.00379 1.88128 1.19719 1.28525 1.95348 1.22962 0.93921 0.84850 1.01027 1.22546 0.93411 1.01168 0.86616 1.47961 1.64192 1.04410 1.13766 1.20026 0.79065 0.84022 0.87219 1.90709 1.43996 1.74059 1.32579 1.20325 0.79809 0.83546 0.88735 1.90583 1.44303 1.72381 1.31581 1.46008 1.64284 1.05429 1.18866 1.21351 0.98206 0.90575 0.86837 1.18357 0.93202 0.88941 0.94425 1.21657 0.97452 1.01997 0.96571 1.21670 0.96871 1.01901 0.97364 1.21222 1.43932 0.91733 0.99664 0.93139 1.25510 0.94975 0.98942 0.97923 1.69927 1.46469 1.10834 1.26778 0.85763 0.78702 0.77777 0.80240 1.20089 1.21058 1.20029 1.22179 0.95095 0.95131 0.83927 1.22695 0.98523 1.00958 0.94874 1.22393 0.94248 1.02015 0.96361 1.22248 0.97783 1.00175 0.95488 1.22430 0.95565 1.01462 0.96903 0.91312 0.93181 0.93365 0.91136 0.92435 0.87507 0.85758 0.75717 0.93324 0.93519 0.95609 0.91871 0.96061 0.95878 0.91884 0.95481 0.93070 0.85297 0.93841 0.90113 0.89160 0.92203 0.90682 0.93689 0.88982 0.93768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.94 16 2 O -0.40 -11.18 7.38 -126.55 -0.93 -12.11 16 3 C 0.05 0.96 6.24 71.98 0.45 1.41 16 4 C 0.08 1.65 5.58 86.38 0.48 2.13 16 5 N -0.57 -13.35 2.40 -795.39 -1.91 -15.26 16 6 C 0.51 16.32 6.35 87.27 0.55 16.87 16 7 O -0.54 -18.74 12.46 -3.23 -0.04 -18.78 16 8 C 0.49 18.01 7.10 87.27 0.62 18.62 16 9 O -0.51 -19.20 10.89 19.19 0.21 -18.99 16 10 N -0.69 -27.11 4.95 -464.41 -2.30 -29.41 16 11 C 0.15 6.71 4.50 86.38 0.39 7.10 16 12 C 0.05 2.48 0.50 -52.93 -0.03 2.45 16 13 C -0.12 -5.68 8.08 71.98 0.58 -5.10 16 14 C -0.12 -5.71 8.08 71.98 0.58 -5.13 16 15 C -0.53 -28.21 8.01 25.60 0.21 -28.00 16 16 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 17 C 0.03 1.40 5.15 84.65 0.44 1.83 16 18 N -0.90 -49.39 9.35 21.45 0.20 -49.19 16 19 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 C 0.14 2.45 3.35 45.71 0.15 2.61 16 24 C -0.13 -2.58 6.10 31.69 0.19 -2.38 16 25 C -0.11 -1.89 6.91 31.91 0.22 -1.67 16 26 C -0.12 -2.36 6.40 31.67 0.20 -2.16 16 27 C -0.13 -2.35 5.76 31.32 0.18 -2.17 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 2.77 5.12 -7.98 -0.04 2.73 16 34 H 0.12 1.38 7.98 -2.38 -0.02 1.36 16 35 H 0.41 15.88 5.64 -92.71 -0.52 15.36 16 36 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.02 1.10 6.86 -2.39 -0.02 1.08 16 39 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 40 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 43 H 0.03 1.14 6.86 -2.38 -0.02 1.13 16 44 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 45 H 0.13 1.34 7.86 -2.39 -0.02 1.32 16 46 H 0.04 1.20 6.31 -2.39 -0.02 1.18 16 47 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 51 H 0.04 1.20 7.23 -2.39 -0.02 1.18 16 52 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 53 H 0.04 1.09 6.96 -2.39 -0.02 1.07 16 Total: -1.00 -63.51 400.41 4.06 -59.44 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.34 Total: 30.94 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 6.47 Total: 8.38 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -4.01 Total: -93.86 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -0.76 Total: -49.88 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -63.51 4.06 -59.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345424458.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.195 kcal (2) G-P(sol) polarization free energy of solvation -63.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds